RNA id: TU9645


Basic Information

Item Value
RNA id TU9645
length 3036
lncRNA type sense_over
GC content 0.52
exon number 3
gene id si:ch211-207j7.2
representative False

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 23734364 ~ 23746031 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ggagagaggccaGTCAGCACAGAAGGAAAGAGTCCCACattgtcttcttcttcactgaGTGGACTGTCTGTTCCTGACTTACCTGGCTCATCATCCAGAGGGGGAACTAGACCCACAGCAGCACGCCAGTCAGTTGGCAAGTTGGGCATGTGGCCCCCTGCCCAGGCTGAAGAGGAGAAGATTAACCAGCCAGAGGTCCTCCAGAGTCCCCGGACCCCCAGACAGAAGACCCCTCTGGTACAACGCTGGGAGTCAGGTCTAGTCAACGGGCACAACATAGAAGACGACTGAGGAGACGTTGACAGGGCGTAActgaaggagggaggaaggttACCAGAGACCTGTAGTTTTTTGAAGTGGAGGGCTGAAAGACTGTGAGATAAAAAGAAATGCAGTGTACGGAAATTGGGAGCAGACTAGAGGAGGGAGCAGGGATAAagtggaggaaagagagaatgtGAAGTGAGAAAGAGGTCAGGGATTGAGGCTACAAAGGGGGTCAGGAGGATTGGGAGCAAGGAAAAGGATTGGCGGTGGACTGAAAACCCTGAAGAGTCCTTCAtcgaggaggagagaaaaagaaggaagaggGCCACCTTATTAGTGGATAAGCACTTGGCCTGTTTCTGGTGCTGTAAAACTCTGAGACTAATGaatgtaaaaaggaaaaacaaaataataatactgcactggtgaaaagaaaaatgtaaatttagTAAGAATGGGATTTCCAAACTTTAATGAAGTTCTTAACCAttggatttttttaatattaatgaaatGTTATTTCTTGATGAAAATAGATTGAGTGGTACAGTATCTAGCTAGAAAAATGATGTGTCATCACCAGTTTTTTGCCTCTAATAATGTCTCACACTGAGTTACTAGTTTATTACACCTGTACAATCTAATGCAATCCCATACAATATCCATGCAATAAATCCTATCTTTGTGTAGCTCAGTCTGTTCAGTTTTCATTGAGTCTATATcctcgatgttccacttccgctATTGTTCAGGTACCgccggaaaaagaaaattaatttcAGCAATTATTGTATTTGATCACTTAATTAAGGTGTTCCTTTTGAACAGGTAACTCAGTGTATATAGGCCAGTGATCTGGATTATTACACAAGTCGTAATTCCTGAATAGCTACTTCTTTTGTTCATGCATCACTACTGAGAGCTGGACTATAGTGCAATGAGGCACCTTCTTAAAAAAGTGTTGATCTGGATTTCAGAGCTGAATGATGCTACATACTGTATTACACTCATAATGCTTAAATAATAGCTGCTCTCTATTGTTTAGATGtgtacctttttttaaatgataaattTGTATTTTGGAATGAAACTTGATACACATAATTAAGGTGTCTCCTTTATTGtcctttatttctcttttttttcttctttttttgtaccTGACTGAGGCCGACATAATATGACGCTAATACGTTCAGTATTATTCTACTAACTCATATGCCACAGCAGCCTAAAATGAAACTAATTAAGGTGGGCTGAAGTCAATAATGGAGTCCTGTCAGTACAGTTTCTCTTAGCACCAACACTATGTTTgggccacaacacaaatgccaCTGATCCTCTGAACAATTTTCTGCTTTATGTTCTATCTTTATTTGGGTCCCTCACACTGTCAGTGGTCAAAGAGAAAATGTGTCACCATGGATACAGCTTTGGAAGAAGATGTAAGCTTTGCTAGAATTAGGCAGCATAAATGCCACCATAGAccattgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagagatcagtaGACCACGCTTTAGTGACCTCCCAATCTCCTATGAATAATTTATCACCTTTTTCTGACTGGACGCAGCCCAGCAACATTGCCAGAACATTATTATTATGGTGGAGCTGCCGCAACATAAGTGCTCAAAATTATTAATAAGCTTTATTCCTCACTAGGAAACTCATATATAGAAACCCTCATATTGCCACATTGCCAGGTCTAATGGCAGATTACCAAAAGTCTTGGTATAACAGTAAATGATGTGCAGTCTGTCAACCTAttgaaaatatgaaaatgaactACACACCCTACCAGACCAACAGCTTGGCACTGAGGAGAAGAGTTGTTATAACACACAGTATAGTTTCTGTTTTGTTATCTTGGAATAATTTCAGAGTCAAAGAtcaaagatgatttttttatgccCAGACAATCAAACATACAACTACTTTCcaagttctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctcgctctctctctatgATATCTAATCTGGCTGCTTTTGAGATCTGCTGATGCAAAAATAAACCTGGACACCTGTCTATCACCTGCTCAGCCCCAGGCTCATTTCCATTATATTTCATTATCACCATCTTCCAAAGTCCTGCTGATACAAAATCATCGTTTAGAGGATTAGCTGCTgctcttttaaaaaacacaaacagatatTCCGTCAcagaacggaaatttcaaaaggagaaaatactgccATTAGTATTATTGTCAGAAAaaatagtatttcaacttagcatgtttccttaatatctgatcatttttggatttattacagtaaatatattacatattgtgaACTAAGTGATTTTATTGTGGTATTGctatttacttaagtaaatgatctaaatacttcttccaccactgcttcgTTATTACAGAAGATGGCACTCAATGCTGTAGCAAGACCTTTATGACTGTAGTGTAATCATGGAAAACATACCCTTATGTACTTAAGTCACTATCCAATCACAAGTCATTCAGTCACAATTGTATGTGAGTCTCaatgtgtcatgtgtgtgtacatgtcaacagacaataaaagaaattcaGAGATTATTCTTTTGATTTCCTCATATATGGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU9631 lncRNA downstream 149842 23584200 ~ 23584522 (-) True G7069
TU9629 lncRNA downstream 157235 23576928 ~ 23577129 (-) True G7067
XR_005638753.1 lncRNA downstream 163331 23567560 ~ 23571033 (-) False LOC120555765
TU9681 lncRNA upstream 142914 23882749 ~ 23885720 (-) False LOC120562828
XR_005638830.1 lncRNA upstream 197574 23937409 ~ 23943368 (-) True LOC120556236
TU9751 lncRNA upstream 200138 23939973 ~ 23943573 (-) False LOC120556236
TU9760 lncRNA upstream 275624 24015459 ~ 24055760 (-) False G7141
TU9757 lncRNA upstream 297041 24036876 ~ 24054473 (-) True G7141
XM_039797387.1 mRNA downstream 13614 23713147 ~ 23720750 (-) True LOC120557242
XM_039797373.1 mRNA downstream 48925 23657337 ~ 23685439 (-) False rab11fip4b
XM_039797366.1 mRNA downstream 48925 23657337 ~ 23685439 (-) True rab11fip4b
XM_039794846.1 mRNA downstream 78108 23650623 ~ 23656256 (-) False LOC120555782
XM_039794864.1 mRNA downstream 78414 23650623 ~ 23655950 (-) False LOC120555782
XM_039794043.1 mRNA upstream 33021 23772856 ~ 23811021 (-) True palm3
XM_039806733.1 mRNA upstream 142910 23882745 ~ 23885762 (-) True LOC120562828
XM_039795744.1 mRNA upstream 327093 24066928 ~ 24068828 (-) True LOC120556266
XM_039814416.1 mRNA upstream 351832 24091667 ~ 24096223 (-) False lyl1
XM_039814409.1 mRNA upstream 351832 24091667 ~ 24096223 (-) True lyl1
XR_005638947.1 other downstream 20278 23711827 ~ 23714086 (-) False LOC120557242
TU9627 other downstream 161315 23572705 ~ 23573049 (-) True G7065
TU9432 other downstream 492074 23213856 ~ 23242290 (-) True G6943
TU9396 other downstream 569427 23088500 ~ 23164937 (-) True G6924
TU9329 other downstream 745864 22981925 ~ 22988500 (-) True G6881
TU9637 other upstream 12191 23752026 ~ 23768841 (-) True G7071
TU9657 other upstream 34890 23774725 ~ 23810964 (-) False palm3
TU9658 other upstream 34890 23774725 ~ 23780324 (-) False palm3
TU9991 other upstream 792401 24532236 ~ 24535316 (-) True G7323
TU10046 other upstream 1016097 24755932 ~ 24759600 (-) True LOC120543531

Expression Profile