RNA id: TU9757


Basic Information

Item Value
RNA id TU9757
length 2500
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G7141
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 24015459 ~ 24055760 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGAAAAGGAAGAGAGGATATAGGGGAGGTACAATGGAGGGGATTCATTTCAAAAGGCAGGAGGAAATAAAAGTTGTCCCCGAGCGCTGGATGGGCGACGACCTTTTGCCTCCTCGCAGCACTCAGGGGCAACCTGCTACCTCGAGCTGTTTCGAAAAAAAGGGCCGATCTGGATTACAAAATGGAGTCTGTGAACAAAAGGCACTTTTAAGGGACAACCTTTAACTGCTGGGAAACTATACACTACAGCACAAGCACTATAAGAGTCATTTACAGAGGAGGGGGTGGAACAGGGGAGAGGCTCACCTTGCTGCCTGTTtcatagatgttttttttttttcttctgattttaagctactttttttgttgccccttttccatttctgttattTGTGCAGGCTACAAAAGGTCTTACCTTTTACTCTTTCCATTGCATGTGGGTCTCAACACAACCTGCCGAATTTGATCCAGCTCTAGATTCAGAAAAATATCAACATGCTCATGGGAATAAAATATTTCTGGATGTAAAACATCTCCTGCATTACAGGGAATAACTTGTAATGTTTTATACCAATGTATGAGATGAAAATGTGTTAAATTGGTagggttgttttgtttttttgctggtGAGTTTCAGGCAGTGCACGGGTAAGTTATCTAAAGAGTTTCTTGACAGTATAGGTTTGTTATTTTCTAAAGGTTGAACCAAAATGCCTTTTGTGTCACAACCTTAATAGGAACCTCTCCCCCCCACTCAATACAAatagaagaagaataaaaatagAGAGGAATAATGCTGTTTCCTAAATGGTCTGTTATTTTTGTTCATTACCATTCATTTATAATAGTTGCTGAATGTACTTTATAGTGTTAAAGCACCAGTTTTCATCTGATGATAGAGATTTGTTTTTCTTAAGTTGTgtagaattgttttttttccttcagcCCTCCCACATTTTTATAAACAACCGATtacacataaaacattaaaaaagagacaaaagaaataaaaacaaatacccCCGACTTACAAAGACTAGGATTTTTCATGGCCCTCTAGTTTAGAGTCCTGGAGCTTACGGActtgaaacaaatacatttttttttctcttttctcttagCTTTCTTAAAAATCTctaacagacaaacacaatgaTCTACCCAATGCATTGCACGTGGCTCAATCGACACATATTTTTCAATAATAATACTTTCcatcaaaaaacacttttttttttcttcttcaaaccTACTGTCGATTTTTGTTCATCTAGGTATTATAATGCTGCGCTGCAGATGGCGATGGTGTGTGTCGTTTGATTCGTACTGGTAACAGTAAGGTGATGTTACTGAAATGggttgtgggggtgggggtggggggagggagggtggTGAAAGTTCAGAAAATAACTAGACTGCCAACCAGCTCATGTAGTAAAAGTTAAAAAGGAGCATATatcataaatatatatgtataagatctctctctctctctctgtctttacaAAAAAAGTTTGCAGTCCTCTATAAAGATCTGTCCTAGGCCAATGGTTTCCACATGCACCAACGCTACCATTCCCTGTAGCTTTAGCTTATATGTGGGAAGAGAACCTGAAGTCAAGTTTATTACTAATTGCATGAAGGGAATACAGAGGCACTTTCATATATTGTTATAGTCTTGATATATGGTTTTAGTACATAGAGCTAATGTTACTAGAGAGGCTGAGAACAGTGTCTCAGGCCTGTTTACTATCCCTGCAAAATAGAACCAACAGCTAGGCAGTCCAGTTATTTTGTGAGGTCGGCTTTTGTTGGATGgtgtcatgatgaaaataataccGATAGAAATTTCAATGTGAACAtttacatagaaaaaaaaaggatctcaaattaaaaagaaaaatcttacGTGAATGAAAAACCATTAACAAAGGCAGTTTGGAGAACCAAATATAAAGGCTTCCCTTTATTATTTAATGTCAGGTTGTTGGTGGTGTTAGTGTGCCttttatatgtgtgtctgtgtgtgtatgtgagcgtgtgtgtgtatgtgtgtagtccACTGGGTCTTCCTGTGAATGGACTAAGGGATACACGGTGAAGCAATGCAAGGGATGCATGTGACGAGCTGTTGTTACTGTGCTGTTCATATGTGAGAGATTTGAGAAATTACTGTTACTGTTTTGCTGAAATCTGAGCATGATACTTAACGTATTACTGCAAACTACAGAAAAAGTGTTATGACATGAAAGAGAAGGTTAAAACAATCCAAGTGAGacaaaaaccaaaaccaaatctggcacacaaaaaaaaaaggaaaacgcaAGAAAATACCTACAAACAAAATCAAAGTTAATAATATGAAGCTGATGATGGCTGTGCATTACTGTAAATTAAATTCCATGTCTATGAATAGTAAGATGATATTATGAGTGGTTGTGAGACAGACTTCTCAGAGAAGATGGTCTGTCTGCAAGTgtgtacacctgtgtgtgtgtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU9751 lncRNA downstream 93303 23939973 ~ 23943573 (-) False LOC120556236
XR_005638830.1 lncRNA downstream 93508 23937409 ~ 23943368 (-) True LOC120556236
TU9681 lncRNA downstream 151156 23882749 ~ 23885720 (-) False LOC120562828
TU9645 lncRNA downstream 297041 23734364 ~ 23739835 (-) False si:ch211-207j7.2
TU9631 lncRNA downstream 452354 23584200 ~ 23584522 (-) True G7069
XR_005638833.1 lncRNA upstream 2028 24056501 ~ 24059844 (-) True LOC120556287
TU9804 lncRNA upstream 28040 24082513 ~ 24084276 (-) True G7179
XR_005640574.1 lncRNA upstream 42219 24096692 ~ 24099093 (-) True LOC120567450
TU9951 lncRNA upstream 390707 24445180 ~ 24449314 (-) True G7292
TU9993 lncRNA upstream 481907 24536380 ~ 24539504 (-) True G7324
XM_039806733.1 mRNA downstream 151114 23882745 ~ 23885762 (-) True LOC120562828
XM_039794043.1 mRNA downstream 225855 23772856 ~ 23811021 (-) True palm3
XM_039804326.1 mRNA downstream 290845 23736038 ~ 23746031 (-) False si:ch211-207j7.2
XM_039804317.1 mRNA downstream 290845 23736038 ~ 23746031 (-) True si:ch211-207j7.2
XM_039797387.1 mRNA downstream 316126 23713147 ~ 23720750 (-) True LOC120557242
XM_039795744.1 mRNA upstream 12455 24066928 ~ 24068828 (-) True LOC120556266
XM_039814416.1 mRNA upstream 37194 24091667 ~ 24096223 (-) False lyl1
XM_039814409.1 mRNA upstream 37194 24091667 ~ 24096223 (-) True lyl1
XM_039817383.1 mRNA upstream 79424 24133897 ~ 24135669 (-) True LOC120569492
XM_039811894.1 mRNA upstream 82915 24137388 ~ 24145207 (-) False zglp1
TU9657 other downstream 225912 23774725 ~ 23810964 (-) False palm3
TU9658 other downstream 256552 23774725 ~ 23780324 (-) False palm3
TU9637 other downstream 268035 23752026 ~ 23768841 (-) True G7071
XR_005638947.1 other downstream 322790 23711827 ~ 23714086 (-) False LOC120557242
TU9627 other downstream 463827 23572705 ~ 23573049 (-) True G7065
TU9991 other upstream 477763 24532236 ~ 24535316 (-) True G7323
TU10046 other upstream 701459 24755932 ~ 24759600 (-) True LOC120543531
TU10312 other upstream 1643788 25698261 ~ 25699557 (-) True G7589
TU10328 other upstream 1729471 25783944 ~ 25788229 (-) True G7603
TU10486 other upstream 1947051 26001524 ~ 26003263 (-) True G7722

Expression Profile