RNA id: TU98


Basic Information

Item Value
RNA id TU98
length 260
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G48
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 345628 ~ 345907 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agtgctcacacccgcctaatacaatacaataaatacaatacaatacaaaatttataaaaatgtacgtttaaagtgcttgttgtgctgtctgataGCCTGAGGTATAAAAGAGAGAGCATACCGCTTAGTTCGTGTCACGGGAGGCCTtagcctaccactacgttcCATAACCCTACCAGGCAGATTACCATGAAGAGGGTGACCCGGTTCCCTCAGTattttctgtgtcatttttgcCAGACGGTCTTCATATACTTGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66 lncRNA upstream 24849 319697 ~ 320779 (+) False rrp36
TU69 lncRNA upstream 24849 319697 ~ 320779 (+) False rrp36
TU72 lncRNA upstream 24849 319697 ~ 320779 (+) False rrp36
TU76 lncRNA upstream 24849 319697 ~ 320779 (+) False rrp36
TU82 lncRNA upstream 31599 313130 ~ 314029 (+) True G36
TU99 lncRNA downstream 23121 369028 ~ 369297 (+) True G49
TU100 lncRNA downstream 24744 370651 ~ 386648 (+) True G50
TU106 lncRNA downstream 63834 409741 ~ 410462 (+) True G55
TU320 lncRNA downstream 176625 522532 ~ 522989 (+) True G221
TU362 lncRNA downstream 340538 686445 ~ 692229 (+) True G261
XM_039812604.1 mRNA upstream 25804 291252 ~ 319824 (+) False rrp36
XM_039812597.1 mRNA upstream 25804 296857 ~ 319824 (+) False rrp36
XM_039812587.1 mRNA upstream 25804 304227 ~ 319824 (+) False rrp36
XM_039812578.1 mRNA upstream 25805 309769 ~ 319823 (+) True rrp36
XM_039802184.1 mRNA upstream 121032 200413 ~ 224596 (+) False LOC120560073
XM_039812648.1 mRNA downstream 84285 430192 ~ 439191 (+) True rbm34
XM_039802994.1 mRNA downstream 106069 451976 ~ 453564 (+) True LOC120560448
XM_039813297.1 mRNA downstream 112471 458378 ~ 462863 (+) True LOC120566701
XM_039813048.1 mRNA downstream 124838 470745 ~ 473664 (+) True LOC120566520
XM_039813059.1 mRNA downstream 140705 486612 ~ 494282 (+) True LOC120566531
TU56 other upstream 131078 211235 ~ 214550 (+) True LOC120560073
TU13 other upstream 168566 175133 ~ 177062 (+) False LOC120560058
TU6 other upstream 194648 70004 ~ 150980 (+) True fbxo3
TU279 other downstream 132064 477971 ~ 481890 (+) True G184
TU271 other downstream 237483 583390 ~ 598207 (+) True G176
TU268 other downstream 656519 1002426 ~ 1009733 (+) False LOC120566414
TU294 other downstream 671000 1016907 ~ 1019038 (+) True G199
TU395 other downstream 770717 1116624 ~ 1144413 (+) True G292

Expression Profile