RNA id: XM_039776742.1


Basic Information

Item Value
RNA id XM_039776742.1
length 1966
RNA type mRNA
GC content 0.58
exon number 5
gene id neurl1aa
representative False

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 48214304 ~ 48320857 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtgggggggggagttgCCTTCACGGATGTGTGCCTGCGCTCACAAGAAGGAGGTGTGGGTTTGTCTCCAGTGTTTGCATCTATTCGGAGGAAAAGGAAGCGATAGGCTGCCTTTGGACGCGAACGTGCAATCATGTCACGAGCGCCGGACTGTGCAACGACAGCATCTGAATAATCCATACAGGGGATAAGCAGCGGGCTGTACAGGGATAAAGCCATGGGTGGACAGATAACGCGAAATGCCTTTTACGACTCCCTCGGTGGCCCGTTCCCGTCCACGTCCCACCGATGCCACCACAAACCCAAGAGGTGCCTGCCTATCCAGTGTGGCAGCGTTGGTGGGCCCCTTCACATCAGCCCACTTCTCTTCCATCCAAACGCGAAGGGATCCCAAATCGTCATGGACAGTGTCCAGAAGACAGTCAAGAGGCAGGCCAGTTTCTGCAACGCCATCACCTTCAGCAACAGGCCCCTAGCGCTGTATGAGCAAGTCCGCCTCAAGATTACTAAAAAGCAGTGTTGCTGGAGCGGGGCTTTACGTCTGGGCTTCACCGCCAAAGACCCCTCCAGGATAAACCCCGACAACCTTCCCAAGTACGCCTGCCCCGACCTGGTGTCCCAGAGCGGCTTCTGGGCCAAGGCCCTGCCCGAGGAGTTTGCCAACGAGGGCAGCGTTATCGCCTTCTGGGTTGACAAGAAAGGCAGAGTCTTCTACCGCATCAACGAGTCCAGTCCCATGCTGTTCTTCAGTGGAGTGCGCACAGCTGAGCCCCTCTGGGCCCTCATTGATGTTTATGGTCTGACCCGCGGAGTGCAGCTGCTAGaCAGTGAAATTGTTGCCTCTGACTGCCTCCGCCCGCGCTCCTTCACCACAGGGCGCTCGTCCTCTCTCCGCCGCGAAGCTGACGACTCCCGCCTGTCCGTAAGCCTGTGTGACCTCAAcctgcagcaggaggagggGCGCAACGCCCACTCTCACTCCCACCGCCACACCCTCCACCTGGCCTCCGCCTCCCCGTCCTCCACCTGCCCCATTCCCCAGAACTCCCTCAACTCACAGCAGTCCTCTCTGCTGCCGTCGGCCCTGGAGAGCGACCTGCACTTCCACCAGCTGCGCGGCGCCCACATCAAGACGCTGGACGAGCAGACGGTGGCGCGATCCGAGCACGCGCGAGAGGAACGCACCCTGGTCTTCACCGACCGGCCCCTGCGCACTGGAGAGACCGTCTTCATCAAGGTCACCAAGTCCAGCCCCGCGCGCTCGGGCTCGCTGTCCTACGGCGTGACGTCCTGCGACCCGGCCATGTTGCACCCAAGCGACCTGCCCTACAACCCCGAGGCTCTGGTGGACAGGAAGGAGTTCTGGGCGGTGTGTCGGGTGCCGACGCCTCTCCAGAGCAGCGACATCCTTGGCTTCTTGGTCAACCCACAGGGGGAGGTGCTCCTCAGCCACAACGGCACCAACGTGGGCATGCAGGTGTGTGTAGACAACTCCCGCCCACTCTGGATGTTCTTTGGTCTCCATGGGGCTGTGACTCAGCTGAGGATCCTGGGAAGCATCTACGCACATTTCCTAGGATCAGCAAGAATAGTAGATGGTCCGTCACGTGCCAGGAAGATGAAAAACAGGAAGCAAGCGAGCAGCGGTTGGAGAGAGACTGCAGTGGGAGGGAGGGCTGTGACCTGCACACAGCAGGGACAAGAAGATGTCTCAGCGGGTGGACACTTTGCCTGTCAGTGGTGTGCCGAGACACTTCGTTGGCTCTGCCAAACATATTTGCCGTCCCACGAGGTGCAGGCAGCTGTCGCTCATAAACATGAAAAGTGGAAGACAGATCTGCAACATGCTGTCTTTATGGATGCCTTTCTGAATGCTATTTGATCCCACATCTCTCTATTAAAGGCTAGAGCCGCGAAGATgaattgattatttgattagttgtcaacagttctggaatgtaactaag

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17058 lncRNA upstream 14208 48199866 ~ 48200096 (+) True G12827
TU17057 lncRNA upstream 18572 48195518 ~ 48195732 (+) True G12826
TU17056 lncRNA upstream 23668 48190349 ~ 48190636 (+) True G12825
TU17054 lncRNA upstream 24506 48189253 ~ 48189798 (+) True G12823
XR_005636482.1 lncRNA upstream 112340 48101500 ~ 48101964 (+) False LOC120544319
TU17078 lncRNA downstream 31267 48328015 ~ 48329753 (+) True G12844
TU17079 lncRNA downstream 33706 48330454 ~ 48331505 (+) True G12845
TU17080 lncRNA downstream 37477 48334225 ~ 48334737 (+) True G12846
TU17083 lncRNA downstream 42117 48338865 ~ 48339107 (+) True G12849
TU17084 lncRNA downstream 42444 48339192 ~ 48339516 (+) True G12850
XM_039776844.1 mRNA upstream 11550 48200870 ~ 48202754 (+) True LOC120543662
XM_039808768.1 mRNA upstream 1088817 46846017 ~ 47125487 (+) True LOC120564084
XM_039808779.1 mRNA upstream 1088817 46846017 ~ 47125487 (+) False LOC120564084
XM_039808795.1 mRNA upstream 1093670 46846017 ~ 47120634 (+) False LOC120564084
XM_039815239.1 mRNA upstream 1812939 46392846 ~ 46401365 (+) True si:ch73-6k14.2
XM_039810075.1 mRNA downstream 200717 48497465 ~ 48609279 (+) True LOC120564817
XM_039796786.1 mRNA downstream 314531 48611279 ~ 48704119 (+) False LOC120556912
XM_039796795.1 mRNA downstream 315518 48612266 ~ 48703780 (+) False LOC120556912
XM_039796778.1 mRNA downstream 315521 48612269 ~ 48704119 (+) True LOC120556912
XM_039796809.1 mRNA downstream 417729 48714477 ~ 48721252 (+) True LOC120556923
XR_005640059.1 other upstream 1088817 46846017 ~ 47125487 (+) False LOC120564084
XR_005640058.1 other upstream 1093328 46846017 ~ 47120976 (+) False LOC120564084
TU16762 other upstream 1796531 46416428 ~ 46417773 (+) True G12553
unassigned_transcript_72 other upstream 2006579 46207653 ~ 46207725 (+) True trnak-uuu_1
unassigned_transcript_71 other upstream 2007300 46206932 ~ 46207004 (+) True trnat-ugu
TU17111 other downstream 132052 48428800 ~ 48487894 (+) True G12872
TU17110 other downstream 132105 48428853 ~ 48488219 (+) False G12872
TU17112 other downstream 188500 48485248 ~ 48486493 (+) False G12873
TU17113 other downstream 188500 48485248 ~ 48486493 (+) True G12873

Expression Profile