RNA id: XM_039782428.1


Basic Information

Item Value
RNA id XM_039782428.1
length 5429
RNA type mRNA
GC content 0.46
exon number 10
gene id rhbdl3
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 23438831 ~ 23501859 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACAGCATGCACAAACGACCTACAACCTATGAGCCAGTGACGGCCAGCAGTTCAGCCAGGGAGCCGCGGAGTTCCTTGAAACCCCTGAGCGAGAGTGGCTGGTGATCCCTCCTCAGCGCCGGTCAgatctctccctgcctcccctCTCTTCGCCCCCACCCTCTCTTTCcatcgctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcctggagCAGGGACGCATGCGGCTGGAGTAGAGTCCCGGCGTCTCCTGGAGCTGAGCCAACCCCAACGTAGGCGGTCGGGGTGCCACTCCCCCTCTTTGAGGCTTCCCGTCGGCACGCGGCGGACAAAGCAGACGGCTGTCCCCGTGCTGCGCCGCAGACCGGCCAGAAAGCAGCTTGCCAGATGGATCTGCGCTCTGTCGCCGCTGCGTCGCATCTCTCAAAGTGAGAAGACTCTGCAAATGTGCGTCCCCTGCTTCACAATCTTGGACCGCTGCCTCTGTCCGTGGCGGGCGAAATCCAGGCTTCTCTCCAGCGCTGCAAACCTCTGTCACTGCTGACTAACGATGTGGCGGACGGTGGTGTGACATCGCAAAGGGACAGCCCAGAACTTATCACTAAACTATTACCAAATCAACTTTTCCTCTGCGGATGAAGATTTGTTTGCCCGGTCTATGTGGAAGTGCTCTGGGAATAACTGGAGTAACTGagtgtaaattaaaaaaaagtatcctACGTCTTTAATTTATAGGTGTCTCTATCATTCCACCTGGACTAACTAATCCGACTGTCCACAGTCAAACTGGAAGGGATGCGAAGGCGAGCATGGTGCTCTGCTTTCTTATCTTCTGTTGTTGCTAACGCACAAAGGGGAGCGAAATTGGATTGTAAACTATGTGGAGTGATTCCTGAGGACTGAGTCGCTGCTCTCCGCGGTTGTATGGAGAAGAGCAGTCCGAGGATGACGGGAGGAACCCGGGAGGCGCCTGTGAACGCCTCTCCGGCGGTTGCGTCAAACGCGGAGGGCGAGGAGATCGAGGTTTTGGAAAGCACCGACGTCCTCCCAGTGGCTCCAGAGGACCAATGGAAGTCTCTGTTTGACAAGTATGACCCAGAGAATTCGGGCTTCATCAGTACAGAGCGGTTCAGGGACCTGTTGGCGACCCACGGCTCTGAGCTTGACCCCCACAAACTAGAAGTCCTATTGGCCCTGGCTGATGGTAACGCTGATGGAAAGATCTGCTACCAAGACTTTGTCAACCTGATGAGTAACAAGCGCTCCAACAGTTTCCGGAGGGCCATCCTGCAGGGGAGCAGGCAGCTAAAAGGTTGCAGTCTCAGAGATGAGGCGGGCTTGGGGCTGTCTCAACGGCTGGTCAGGCACGTCGCCTATGAGACGCTGCCCCGCGAGGTTGACCGCAAGTGGTACTTTGACAGCTACACCTACTGCCCCCCACCCTGGTTCATCCTGGCTATCACCATTGCTGAGGTGGCCGTGTTCATGTACTATGGGTTCCAGCTGGACCGCTTGGTCCTGCAGGTATCCAGTCCGTCCTTTCTAAAGAGCCCCTTACCTTACCACCCCCAGCTACGAGCCCAGGCCTGGAGGTACCTCAGCTACATTTTCATGCACACTGGgatTGAACACCTGAGCCTGAACATGGCCATGCAGCTGCTGGTGGGAGTCCCTCTAGAGATGGTCCACGGAGCCCTGCGGATTGGACTGgtctatgtgtgtggtgtgctggCAGGGTCGCTGGCGGTATCTGTCACGGATATGACGGCTCCAGTGGTCGGCTCATCTGGTGGAGTGTACGCTCTGGTCTCAGCACATTTGGCCAATGTAGTAATGaATTGGTCGGGAATGAAGTGTCAGTTTAAGTTATTTCGGATGGCCATGGCTTTGGTTTGCATGAGTGTAGAGTTTGGTCGGGCAGTGTGGCTGCGGTTCTATCCACCGGCCTTTCCTCCATGCCCCAATCCTAGCTTCGTAGCTCACCTGGGAGGGGTGGTAGTTGGTCTGACGCTAGGTGTGGTAGTACTGCAGAACTACGAGCAGCGACTCCAGGAGCAGTCCCTATTTTGGATCTTCTTCTGCGTCTACACCTTGTTTGTGCTCTGTGCCGTCTTCTGGAACATCTTCGCCTACAGCTTGCTTGACGTGCGACTGCCTCCACCACCTTGACTTGCTTATTAGAGGCGGACTAGACTCTGTATCCCCCTTATCCCTCCATCGGCAGATCCCTGACCACCTGGCTGGATGAGTCAGCCCTCATATTCTGAGCCTCATTGTGTGGTGATCGGAGTCATCTGACAGCCACCCTCATCCTACATCCAGCGCTCTGATGCAGGGATGCACCTGACATGCAGCAGCCCTTGCTGTCGGTCTCATCATACCTTTTTCAGCCCACCTGCTCCCTTTTCGGGTTTAGCGTTACCATTGTTTCCGCTTACCATACAAGCTAACCTACATCTGCTCTTTGTCTACATCTCTGTTGGACGTTTGTGTCAAGAGTATCAGTCAGTGGGACTTTTGTTGACAACACAATGACAAATGAGAAGTCTTAGATCTAAAACAACAGGAACAAGCAGGAACACTCCTGTCCACATGGCTTAACCTTCTCTGCCTCTTCCTACACAATCCAATGGTGCCTTCTCATGGAGATGTCAGCCTGATGAAAGTATTTCTGCACAGTTGCCTCTTGTGTGGGGTGACAGTAGTAAAGCCCTGCAGTATAAACCATTTTCAGACACAAGATATAATCCTGTAATCTGCCTGCACTCTCATCATCAGTAAATTAAGAATAAGGTCATATAAGAATAACCTCTTTGTTTAGTTGGTGTTATGTCATCATTACAAGCAGCTCATAAACATGAAAGGTTTAGATTAAACAGACAGCAGGATAGCTAAACCTCTCCAAGTTTGTAGTGAGAGCATGGATTATATAGGCTACAGCAACCTTCAAAGGTTATTATGAATTTACCTTTGAAGGAGTGTGGGTTAGTTGCCTTCAGActtttgtgtgtgcaggttgTGTGACAAATGTACCATTGCGCATACAGATAAAAAAACGAAAGAAGCAGAAGTGCCATTCAGGCTTTTAAGCTTTCAAAAATGATGCCAAAACATTGCTACAAGCAATTGTGCAAgcaaaaatacattacatacactaATTTTGTCTGTAAGGAGTAAGTCATACGTATTTACTGTAACAGAAAATAatcttgagaaaaaaaattctcaCACCCTTCAAATTCTTGTCATTTGCAGTgatgtagtgtttttttgcgACTGGTTGAAAATAGCAAAGACGTGGAAGAAGTTTATTTATTGATTGGTGAGGTGATGAATTAAGGCAAAGTGTAATTAGACTAATGAAAACACTCACCTGTGCCATTCTAAATAAATCTAGTCTTTCTTCTCATTACCAAACATAGAAGAGCAAACATGCCTGACCTCAACTACATCTGGGCTGAGGTCGTTTCACTCTCATATCGGGAGGCATTGGGTGAAAGAAGAAAATCAATGCTTCCTCATTAGTTCCTGTCACAACCTAAATTGTCAATTGATTGGACCGGGATAGAAAACAACCCCAGCCCTAAGCTGCAAGTCCCAAACTGTACTTTAACCTCATGTTATgcacaaacattattattatgtaatatatatacagATTAATATTTTAACATGCATTTGCTGTTgctaatttttttgtttttaacattgtgatATTGGTatgttgtgtatgttttttggTCTGCTTGAATTGTGATATGTTAGCTATATCCTGTATGTATCCTATTTATTGATTGGTTAAATATGGTCTGGGGTTGTATGTAATAAGGGCTATGACACAAAAGTGAGTGAGGGATAAATCGCTGATAATATTTTAACATTGTGCATATTTTGTAGATTTGATATGTACATACTGTAGTACATTAAACAGTTTTATACAGAAAAAGATATGATATCTTTAAATTTTGCCCTCATTTATATCAGTTTTAACTCAGGTCACACATATTCGCAtgaacacatacaaacaaattaGTTTTGTTCAATATTCTTGGGACAGGAATTACCCCCTATTGTGCAAAGAAAAGTGCGAGCAGGCCTTGAAACCAGAGTAACTTTTAAACTCCAACCCCAGTGTTTAGAGAGAGCTCAGGGCCCGAGAGTGGAGAGCCGGGTGAAAAGAAGCAGACATCAAAATGATCAATGAAATGTGTGAGCATACAAGAATCAGCCATAATTCATTCCGAGAAGGGACTTCTAAGCTGTCACTGAACGTCTTCTCTGTCTAGCCATATGGAGAGTAGCGCCTTTGTAGGCATACAATGAAAAATTCATTAGGTGGCCAAGGAAAGCTGCCTCAGTTGTGTTTCCCCTTCCTAAATCTCAAATTTTAGAGGTAATCATTCACCTTGGTGAGAAAGAGTACACAAGTGAAGCTACAGGGAAGGAATATCGGTGTGAATGTATTTGTGGTGTATCTGCATTTATGCTGCCTGCTGAGAGAAGCACTTGTTAGAATTTGGCCACATTTTCATTTGCATTTCAATTCTTTTTAGATTACATGAAGTGGGACTTAGGTTGAGAGtttacacataactattaccaATGTTTCTAACAAGCTGAtggtgatgatggtgatgatggtgTGACAGTGGCGTTGTTGGTGTAGTACTTAATCACTTTGTCATCCTATTCTGTCAGCGTGTGTGAGTGTTATCTATGCAGtgtgttgcatgtgtgtctatgtaagTGCACCTGTGTAATCTGTGTACTTAGTAAAAGATACAATTATTTAtgcttttacaatttttttacaTGAAAGGCATGTTGGTCAGTGCACATCAGACAGTGCCTTGGCTAAAGCCCCATTTACACCTGGTATCAAAATCCGATCTCTTTAGTATTTACAGGGCACAGGCAATTATGACCTTACATggtcaaaagtatgtggacactgGTGCATTACACCTATGTCTTATTTTGAACACCTCATTCTATGAGGTAAATATACAGCCTTCACTCTCCCTGGCTGCTTCTACATGCTCCCATTCGGCCACATTAGTGAGGTCTGTGTCACAATTTATCCCAAAGGTGTTGGATAGGGTTGATGCCAGGGATCTGTGCATGCCAATCAAGATCTTCCACACCTAGGAGACCATTTCTTTATTGACCCGGGTTTGTGCGTGGGGGTACACTCTCACGTTGAAAGAAGAGAGTTCCTTCCCCAATTTGTTGCCACAAAGCTGGAAGCAGCTATTGTCTAAAATAATAGCGAATCCTGTGGCATTATATATCAATAGAACAGAGGAAACCATGAAAAAGTCccaaactaaaataataaaactatgTTGACAGGA

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG:

id description
K02857 RHBDL1_2_3; rhomboid-related protein 1/2/3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU9506 lncRNA downstream 9686 23427512 ~ 23429145 (-) True G6993
TU9498 lncRNA downstream 29629 23408277 ~ 23409202 (-) True G6986
TU9441 lncRNA downstream 184955 23250195 ~ 23253876 (-) True G6947
TU9411 lncRNA downstream 303056 23130518 ~ 23135775 (-) True LOC120556418
TU9508 lncRNA upstream 6415 23508274 ~ 23508560 (-) True G6995
TU9616 lncRNA upstream 64901 23566760 ~ 23570673 (-) False LOC120555765
TU9617 lncRNA upstream 64901 23566760 ~ 23570673 (-) False LOC120555765
TU9618 lncRNA upstream 64901 23566760 ~ 23570673 (-) True LOC120555765
XR_005638754.1 lncRNA upstream 65701 23567560 ~ 23571034 (-) False LOC120555765
XM_039782118.1 mRNA downstream 563 23430937 ~ 23438268 (-) False znf207b
XM_039782055.1 mRNA downstream 564 23430937 ~ 23438267 (-) True znf207b
XM_039782181.1 mRNA downstream 566 23430937 ~ 23438265 (-) False znf207b
XM_039782309.1 mRNA downstream 7560 23420280 ~ 23431271 (-) True LOC120546964
XM_039805339.1 mRNA downstream 265214 23170807 ~ 23173617 (-) True LOC120561952
XM_039805869.1 mRNA upstream 6926 23508785 ~ 23524162 (-) False rhot1b
XM_039805845.1 mRNA upstream 6926 23508785 ~ 23524161 (-) False rhot1b
XM_039805855.1 mRNA upstream 6926 23508785 ~ 23524160 (-) False rhot1b
XM_039805836.1 mRNA upstream 7198 23509057 ~ 23524162 (-) True rhot1b
XM_039805859.1 mRNA upstream 7198 23509057 ~ 23521991 (-) False rhot1b
TU9432 other downstream 196541 23213856 ~ 23242290 (-) True G6943
TU9396 other downstream 273894 23088500 ~ 23164937 (-) True G6924
TU9329 other downstream 450331 22981925 ~ 22988500 (-) True G6881
XR_005640901.1 other downstream 1399680 22039009 ~ 22039151 (-) True LOC120569580
TU8945 other downstream 1729019 21708540 ~ 21709812 (-) True G6592
TU9627 other upstream 70846 23572705 ~ 23573049 (-) True G7065
XR_005638947.1 other upstream 209968 23711827 ~ 23714086 (-) False LOC120557242
TU9637 other upstream 250167 23752026 ~ 23768841 (-) True G7071
TU9657 other upstream 272866 23774725 ~ 23810964 (-) False palm3
TU9658 other upstream 272866 23774725 ~ 23780324 (-) False palm3

Expression Profile