RNA id: XM_039787275.1


Basic Information

Item Value
RNA id XM_039787275.1
length 2670
RNA type mRNA
GC content 0.46
exon number 2
gene id sart1
representative False

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 33548703 ~ 33551557 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTTGTGTGCCTGAGCGTGAAGCTAGGTGGTTAAACTGCTGTGAAAGAAACATATAgctaagtattttttttccacatcctCACTTTTCGTCGATCACTACTGGATTTTGAATGTAAGGTTTCATTTTTGCTTACGCACTAATTGCAACTGTTGTACTCTGCAAAGGAAATAATGGGATCCTCCAAGAAACGCAAGGAAAAAAGCCGCGACAAAGACGCAGAAGAGCGGAAGGACCGACATAAGAAACATCGCCACAAGGACCGAGAAAGAGATGCTTCAGACCGGGATGGGACTCGGGATAAAGAGAAACGTAAACGCTCCAGGTCTCGGGAGAGAAGCGGACGGGAGAGCCGCAGCAAAGGTGAAAGGAGTACCGGGGAGCCACGAGTGAAGAAGGAGAAAGTTGATCTTGGATATGAAGAAAGCAATACAGAGTTGCAGCCTCAGTCTGCAAGCGGAGACGCATCTCTCAGCATTGAGGAGACAAACAAACTCAGAGCCAAGCTGGGTCTGAAGCCTCTGGAATTAAATGAGAACAAGAAGGAGCTCGGCACTAAAGAAGAACCCATGGTGGCTGAGACCATTAACCCTGTTCTCATCAAGAAGCAGAAAGATATGAGAGAAAAGCTTGCAGCCATGAAAGAAAAGCGCATCCAGAACAAGAAACTGGGAAAGGTCAAGACCCTAGCAGAGGAGGACTGGCTGGATGATGCAGCTGCTTGGGTTGAGAAAAGCAGACTGAtggcaaaagaaaaagaaatggcagagaAAAGAGCCAAACTTCTGGAAGAGATGGATGAGGAGTTTGGTGTGAGCAGTCTGATAGAGGAGGAGTTTGCACAAAGCAAGAAGGATGCCTACACATCTCAAGATCTAAAAGGACTCAAAGTGCAGCACAAGGTGGACTCATTCAACGAGGGCCAGACTGTCATCCTGACCCTACAAGACAAAGGTGTACttgaagaggaggaagatgtGCTTGTAAACGTGGGACTGGTGGACAaggaaaaagcagaaaagaatgtggaattaaaaaagaaaaagccagaTTACAAGCCCTATGAAGAAGAGGAGAGTGTGGATGACATGGTGACGTTTAAAACCCACTCTGTACTGTCAAAGTATGATGAGGAAATCGAgggtgaaaagaaaaagagtttCCGTTTGAAGACGGGGGGCTTTGCTGATGGGGAGCGAGAGCGGGAGGTTCAGGCCATGAGAGAGGCTCTGCGAAAACAGGCCCAGTCGTTGGACATGCCTGCTCTCACCATCGCCTCAGAGTATTACACACTCAAGGAAATGGTGGgctttaaaaagacaaaacggCGTGTGAGGAAGATCAGGAAGAAGGAGAAGCAGCCAGCTGTAGATGAGCTGCTCATTGATGACACTCGCAGCACTGATTTTGGCTCCAGAACACGCGGTCGAGGCCGCAAACAGGTTGAGGAAGAGGGTGAGGAAGcaaaggaggaggagcaggagagcaAATTGCCACACGCTATCCCCCAAATGTCCGATGACGTTAGGATGGCAGAAATGGACATAAGTGACGACGAAGACTTTACACCTCCTGAGCCAGCTGCAATTGAGGAGGATGAGGCAGAGCAGGAGCTACAGAAACAACTGGAGAAGCAGAGGAAGCTGAAGCAAAAGCAGCTTCTCAAAGACTCTGGAGAGAAGGTGGCAGAGCAGATTAAAGAGCTTATCGAAGGCAACAATGACAATGATCCTGAGAGGAAGAACAACATTGTTTTCAACGCCACCTCAGAGTTTTGCAGAACTCTGGGTGATATTCCAACGTATGGGCTGTCAGGCAACAGAGAGGACCAAGAAGACATTATGGACtttgaagaggaagaagagaaagatgATGCTGGAGGTTCAGACTCAGAAATGGATGAGAATGTTGGATGGAGCACAGTCAACTTGGATGAAGAGCAGAAACAGCCAGATTTCTCCACAGCCTCTGCCACCATTTTGGACGAGGAGCCCATTGTGAAATCCGGTCTTGCCGCTGCCTTGCTGTTGTGCAAAAACAAAGGTCTACTGGACACTGAAATGCAGAAGGTAGCCCGTGTCAGGGCAACAAAAGGTGCCTTGCCCAATGACAACTACTGCATCGAGGACAAGATGGGCTTTGATGACAAGTACAGTCGCAGAGAAGAATACAGAGGCTTCACTCAAGATTTCAAGGATAAGGATGGCTATAAGCCTGATGTCAAGATTGAGTATGTGGATGAATCTGGGCGGAGACTCACTCCAAAAGAGGCTTTCAGGCAGCTTTCACATCGATTCCATGGTAAAGGGTCTGGAAAGATGAAGACCGAGAGGAGGATGAAAAAGCTGGAGGAAGAGGCACTGCTGAAGAAGATGAGCAGCAGTGATACTCCTCTTGGGACCGTGGCTTTGCTTCAAGAGAAGCAGAAAtctcagaaaacaccatatattgtGCTTAGTGGTAGTGGGAAAAGTATGAATGCAAACAACATCACTAAATAAGGCAGGGGAGGGGAAGAGTTAATTATCTTGAACACATACACTGACACATGCAtagacatacatatacacacaggaTGTTTTAAGTAAAGTAAATGCTCCAATTTCATGCCTACTTCATAGAAGCTTTGTTGTAGTAAATAATTGTCCAATAAAGTTAATACAAAtgacaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12891 lncRNA downstream 21916 33526548 ~ 33526787 (-) True G9565
TU12858 lncRNA downstream 122703 33409522 ~ 33426000 (-) False G9537
TU12857 lncRNA downstream 122703 33425234 ~ 33426000 (-) True G9537
TU12864 lncRNA downstream 124981 33422805 ~ 33423722 (-) True G9540
TU12862 lncRNA downstream 126466 33406650 ~ 33422237 (-) True G9538
TU12922 lncRNA upstream 21646 33573173 ~ 33573787 (-) True G9584
TU12949 lncRNA upstream 64096 33615623 ~ 33615920 (-) True G9608
TU12953 lncRNA upstream 91553 33643080 ~ 33643396 (-) True G9612
TU12959 lncRNA upstream 113741 33665268 ~ 33665794 (-) True G9615
TU12962 lncRNA upstream 170316 33721843 ~ 33722073 (-) True G9618
XM_039810300.1 mRNA downstream 1320 33539583 ~ 33547383 (-) False LOC120564990
XM_039812116.1 mRNA upstream 29326 33580853 ~ 33589041 (-) True asah1b
XM_039799815.1 mRNA upstream 41115 33592642 ~ 33605132 (-) True frg1
XM_039810220.1 mRNA upstream 838621 34390148 ~ 34400994 (-) True LOC120564947
XM_039811009.1 mRNA upstream 853525 34405052 ~ 34411361 (-) False tlr3
XM_039810998.1 mRNA upstream 853525 34405052 ~ 34411360 (-) True tlr3
TU12854 other downstream 30580 33497160 ~ 33518123 (-) False stox2a
TU12774 other downstream 264623 33283078 ~ 33284080 (-) True G9488
TU12680 other downstream 413783 33092460 ~ 33134920 (-) False G9418
TU13113 other upstream 901323 34452850 ~ 34457635 (-) True G9740
TU13477 other upstream 1847113 35398640 ~ 35400474 (-) True G9997
XR_005640911.1 other upstream 1925704 35477231 ~ 35477360 (-) True LOC120569607
TU13574 other upstream 2032943 35584470 ~ 35586582 (-) True LOC120572869
XR_005640401.1 other upstream 2392521 35944048 ~ 35969266 (-) False micall1a

Expression Profile