RNA id: XM_039792527.1


Basic Information

Item Value
RNA id XM_039792527.1
length 8235
RNA type mRNA
GC content 0.48
exon number 41
gene id ptprdb
representative False

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 24994114 ~ 25171062 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCCTTTTTCCATCCCTTTCACTCTCTGGTGGTCATCCCAGCTCGTTTAAGAGTTTCAGTCGGGACTGTGGGAGCGCGTCTGATCGCTGTCTCCAACTTGGGGTGAAGAAAGACAGGGGAAACTCCTCGGGATTCTCCGTACCCCGAGCTCTTTTCCGGATATTCTGTTTGACGTGCCAAAGTGCTTCTTAAGGAGAATTCTGGGGAGATTTCTTACTCTTTCATTCCTCAAGGATGGAGCAGCACAGTGGACCTGTGTACTGAAGCAGCTCCCACTTTTAAACTTAAGATGAACCATGAGCAAAGgtTGTGAGGGCCTGTTTCTATCGTCCTGTCATACAGTGAGGCAGTGAGCTCACGGTGGATACAGCATGCATGTGTCGACATATCCCATGATGCACTCTGCCAGTCCAGGCTTGCTCCTCCTCAGCTTCCTTTTCCTCGCTGATGCCGACTCACCTCCCAGGTTTACGCGAACCCCAGAAGATCAAACAGGAGTCCAGGGGGGGGTGTCCTCCTTTGTGTGCCAGGCCACAGGGGATCCACAGCCCAAGATTGTGTGGAACAAGAAAGGCAAAAAAGTCAGCAACCAGAGATTTGAGGTAATAGAGTTTGACGACGGGTCCGGCTCGGTCCTAAGAATCCAGCCACTGAGGACCCCCAGAGACGAGGCTATTTACGAATGCCATGCCTCCAACTCTGCAGGAGAGATCACTGCCTCCACCCGACTAAGTGTGCTACGAGAGGACCAGCTGCCCTCTGGGTTCCCCACCATAGACATGGGTCCCCAGTTGAAAGTGGTGGAGCGTTCTCGGACCGCCACTATGCTCTGTGCTGCTAGCGGCAACCCTGACCCAGAAATTACCTGGTTCAAGGATTTCCTGCCGGTCAACACGTCCAATAACAACGGACGAATCAAGCAGCTCCGCTCAGAGTCCTTTGGTGGCACGCCTATACGAGGTGCCCTCCAGATAGAGATGAGTGAGGAGTCAGACCAGGGGAAGTATGAGTGTGTTGCCACCAACAGCGATGGGACACGCTATTCCACCCCAGCTAACCTTTATGTCAGAGAGCTGCGAGAAGTGCGTCGTGTCCCCCCACGCTTCTCCATCCCCCCAGCGGACAGCGAGATCATGCCAGGGGGGAACGTCAACATCACCTGTGTGGCTGTGGGCTCCCCTATGCCATACGTGAAGTGGATGCTGGGAGCAGAAGACCTGACGCCCGAGGATGACATGCCCATCGGCCGCAATGTCCTGGAACTGACTGACGTACGGCAGTCCAACAATTACACATGCGTCGCTATGTCAACACTTGGCGTGATCGAGGCGGTGGCACAGATTATTGTGAAAGCTCTCCCAAAGGCCCCTGGTACCCCTGTGGTGACGGAGAGAACTGCAACAAGCATTACACTCACCTGGGATTCTGGCAACCCTGAGCCTGTCTCCTACTATATCATACAGCACCGTGCCAAAGGGTCAGAGGACCCCTATAAAGAGATTGATGGCATCGCCACAACGCGCTACAGCGTAGGCGGCCTCAGCCCATACTCCCACTACGACTTTCGGGTGGCGGCCGTTAACACCATTGGCCAGGGCCCCTCCAGCGAGGTGGTGGAGGCTCGCACAGCAGAGCAGGCCCCCTCCTCGCCTCCTCGACAGGTCAGGGGTCGTATGCTGAGCACCACAACAGCAATCATCCACTGGGATGAACCAGAGGAACCTAATGGACAGGTGGTGGGCTACAGAGTCTACTACACCTCAGACAACACGCTACCAGTCAACCAGTGGGAGAAGCAGATGGTGCGCAGCGCCAACTTCATTACCATCCAGGGTTTGACTCCCAACAAGACTTACTACATCAGAGTGCTGGCCTTCACCTCTGTAGGAGACGGACCCCTGTCCCAGGACCTGCAGATTATAGCCAAGACTGGAGTTCCATCCCAACCTTCAGAATTTAAGGGTGAGGCCAAGTCTGAGACCAGTATCCTGTTGTCCTGGGTGGCCCCACCCCAGGGTGGCCCCGACAACCAGATCACAGGATATGAACTGGTCTACCGTCGAGCTGATGACACAGAGGAGaaaaaggTCACCTTTGAGCCGACCACCTCCTACCTGTTGAACAACCTGAAGCCTTTCTCCACCTACACCTTCCAGCTGGCTGCCAGGAGCAAGCATGGAATTGGGGCGTATACCAACGATGTGTCCATCGACACACCACAGACACTGTTTGCCACCAACTTCAGAGTAAAGGCTGCCATGAAGAGCTCTGTTCTGCTGTCCTGGGAGATCAGAGACAAGAACCCTGCCCAGCCATTCACTATCCTGTATGGAAAGGGCCAGTCTGTGGAAGTGGATGGGAAACAGACTCAGAAGCTGATCACTGGCTTGGAGGCGGACACCCAGTACTCCTTTCTGCTTACCAACCGGGCCAACAGCGCCGGGGGTCTGCAGCACCGCGTCACAGCCACCACCGCCCCAGACATCCTAAAAACCAAACCCACGGTGGTGGGAAAGACCAACGCTGATGGCATGGTGACTGTGCAACTACCGACGGTGCAGACCACAGACAAAGTCAGGGGTTACTATGTGGTCGTGGTGCCACTGAAGAAGCAGAGAGGAGGGAAGTTCCTGAATCCCTGGGAGGAGCCCGACCAGATGAACCTGGATGAGCTCCTGAAAGAGATCAACAGGACTAGTGTCAGTCGTGCCCTCCGCATCCGCAGACAGGCTGCCCAATCAGACCCTAGGGCCTATGTTACTGCTCACTTTAAGACCCTTCCCCTGGAATTTACATTAGGTGATGGGCGAAACTATGGCGACTTCCGCAACCGTCCACTCCAGAATGGACAGGAGTATGTTTTCTTTGTGCTTGCGCTACTTGACCTCTCTGAGAACACTATGTACGCCACTAGCCCTTATTCTGATCCTGTGACCTCATCGGATGTGGATCCTCAGCCAATCGTTGATGAGGAAGAGGGCCTGTTGTGGGTGGTGGGGCCTGTGTTGGCTGTCATCTTCATTGTCTGCATCGTCATCGCCATTCTCCTCTTCAAGAGCAAACCTGACAGGAAAAGGGCCGAGGCTGAAGGCAGGAAGAGCAGTTTCCCCTGCAGCAAAGCCATGTCGTCCCACCATCCCACTGATCCTGTGGAGCTACGCAGAATTAACTTCCAGACTCCAGCCTACCGTGTATCAGTGTACCGCGGTTATCGCCGTTTGTCAAGCATGGCAAGTCACCCACCCGTCCCCATCTCTGAGCTGGCAGATCACACTGAGCGCCTCAAGGCAAACGACAATCTCAAGTTCTCCCAAGAGTACGAGTCCATCGACCCTGGTCAGCAGTTCACATGGGAGAACTCCAACTTGGAGGTCAACAAACCAAAGAACCGCTATGCTAACGTCATTGCCTATGATCACTCCAGGGTCATACTCTCCAGCATTGAGGGTGTCCCAGGCAGTGACTACATCAATGCTAACTATATTGATGGCTACCGCCGTCAGAATGCCTATATCGCCACTCAGGGATCCCTCCCTGAGACTTTCGGTGAATTCTGGAGGATGGTCTGGGAGCAGCACACGGCCAACATTATAATGATGACCAAGCTGGAAGAGAAGTCACGGATGCCCTCTTATTTCTTCTCTAAGGTGAAGTGTGATCAGTACTGGCCAACACGGGGCACAGAGACGTACGGCCTCATCCAGATCACTCTGCTGGACACAGTAGAGCTGGCCACCTACTCTGTCAGGACTTTCGCTCTTTACAAGAGTGGTTCCAATGAGAAACGTGAGGTTCGTCATTTTCAGTTCACCGCCTGGCCAGACCACGGGGTGCCTGAACACCCCACCCCCTTCCTGGCTTTCCTACGCAGGGTCAAGGCCTGCAACCCTCCAGATGCCGGTCCCATGGTCGTCcattgcagTGCTGGAGTGGGTCGCACAGGCTGCTTCATTGTGATCGACGCCATGGCGGAGCGGATCAAGCACGAGAAGACCATCGACATCTACGGCCATGTCACACTGATGCGCTCCCAGAGGAACTACATGGTCCAGACAGAGGACCAGTACATTTTCATTCATGACGCACTGCTGGAGGCTGTGACCTGCGGAAACACAGAGGTCCCTGCGAGGAACCTCTACTCCTACATCCAGAAGCTGACGCAGATTGAACCAGGAGAGAATGTCACCGGCATGGAGCTGGAGTTCAAGCGTCTGGCCAGTGCCAAGGCCCACACATCACGGTTCGTGAGTGCCAACCTGCCATGCAACAAGTTCAAGAACCGGCTGGTGAACATCATGCCCTACGAGACCACACGTGTGTgtctgcagccaatcagaggagtgGAGGGATCTGACTACATCAACGCCAGCTTCATCGACGGATACAGGCAGCAGAAGGCCTACATAGCAACCCAAGGCCCGTTGGCTGAGACCACAGAGGACTACTGGAGGATGCTATGGGAACACAACTCCACCATAGTTGTCATGCTAACCAAACTGAGAGAAATGGGACGGGAGAAGTGTCACCAGTACTGGCCCGCAGAGCGCTCAGCCAGGTACCAGTACTTTGTGGTGGATCCCATGGCCGAGTACAACATGCCCCAGTACATCCTCCGAGAGTTCAAAGTCACTGATGCCAGGgacGGCCAATCGCGGACAGTACGTCAGTTCCAGTTCACTGATTGGCCAGAGCAAGGAGTGCCAAAGTCAGGGGAGGGATTCATTGATTTCATTGGCCAGGTGCACAAAACTAAAGAACAGTTTGGCCAGGATGGGCCAATTACTGTGCACTGCAGTGCTGGAGTAGGGAGGACCGGTGTGTTCATCACCCTCAGCATCGTGCTGGAGCGGATGAGGTACGAGGGAGTGGTGGACATCTTCCAGACTGTCAAGATGCTGCGCACCCAGAGACCTGCCACCGTTCAGACAGAGGACCAGTACCAGTTCTGCTACCGGGCCAGTCTGGAGTACCTGGGGAGCTTTGATCACTATGCAACATAAACCCGAGTGGCCGTCTCTCATACCACATCCCACCTAGCGCACTTTTCTTCGGCCTGAATTAATGCACTAGGCTGCGATGTGTCTTTGAAGATTTTTGCCACCACATGCAGAGTGAAGGGGGACCATCGGCTTTCCCGTTCCCAGAAACAGCACCTCTAACTGAGCCATAGCAACCTGCTTGACAAGGGTGTTTCCTTCCACCCTCAGCCCAAACACACCCATTGGTCAGTCTGAAGAAGCAACTTCAACCACTGTTCCAATCAGAATACTTGAtcaaatattgatttttttatttgtttcagtgCTTTTGTGAGCACCCAGATTGCTTTACATTGTTTGGGTGGGGAACTCTCACCTTGTCCACCACCAGTGTAGCATCATCACCAACCCGGGTACAGTATTTAGCTGTCACAGGAAATTCAGATTTTTCTATCTTGAGGACTGTCTACAAATCCATCTTATGGAAGCCTCGTGGACTGAAAGAACTGGGACATTTAAGCACCAGAGAAGTGCCAACAGGAGACTGAAAACACAGAGCACCGtattaaaaagacaaagaacacatcccaaaaaaaaaaaagacaccaagaagtgtttttttctgttttgttttggaaAAAGACTTGTTTCTTGTGAATGAAAAAGAAGATATTTCTACCATACAGTAATAAAAACCACCAGTTCAACCTTATGCTTCATGATTTAAGATAAGGGAAACTTAAGAGAGGTTTAGAATGCATACCACAAAGTAAAacattaatttagttttttagaACAAATATAGATATGTGACtatcttgttgttgttttttaaactggGTATTCTTTATGGCacgttctgtttttttgtttagttttttttttacagatttatgACTTTGTCCTTACTGACCATACAAAAGCAAagttgcatttttttcccctgtgtAATCCAATGAGCTGtagcgattttttttttttaagtgatgcGGTTCTGTTTTAAAGTGTACAATCAAATTTAGTGTGGAAAATGTTCACAATTCTATGAAAAACACCACTATTGAGTGTCACTCTCCTGTATTCTCTACCCACTCTGTTTTTAAGAACACACATTTCGCATGCACACAGGACTCTCAACCTCATTTCTATCTGGCCTGCGGTGTCAGAGAAGATGGCCATTTTTGAATTCCCAGGGGCAGACAGAGATGCAGTTTTCACCCTGCTGCTACCAGGAAGTCCCGAGAATAATCTCGCCaagttgttctgtgtgcaggtCGGGAGAAAGCCAGATAGAATTACAGAGAGTATGCACAGAAAgcaaaatatgaagaaaaaaaaatatttatgtgtCCAAATAAGCTTCACAAAGATTTCTCAAGCAGGGAGCAAGAAAGGGATGTAGAAAACGGGGTGGAATGGAGGGGGGAGGGTGGGGAAGGAACACTTTTCTCACTGGAATGCTCACCTGTGACTTTTCTCTCTGATTCAGTGTGCAATAAGTAgatgtattatatatttttgtgtccACTCACTAACTGCAGTTATATGCCATTATGATGACAGTGAAATTGATAATGATGATGCATCATTTTCCAGACACAAGGATGTTACGCTTGATATGGTTCTCGCCATTGTTTGATGTGTCCAAACAGAGggatgacctctgacctcttaGGAAGTAGATCTTTTATCATGTCACAACTCCAGTAGatgatgtcatctttctgtGTGTCACGGCAACCAACGAATGATCAAACTCATACTTTAAACAGCATCTAATAAGTATTTTGATTTTAGATTTCTAGTGCCTTATATTACACGCCTATTTTGATAAAGTTACTTTAAAGggttttttgtgtattttatgtatgtatgcttGTACGTATGTGAACTGAATGTCTATGTATATGATTTTGTTGTGTTACAGTACGTGAAAGTATCTTGTGTGTTCTGTTTTTGGCTGTGACATTTTGTATGGAAGGCTGTGCATAGGCCGAATAGTTGTACTCATCACTTTCAATCCAGCAACAACGTCATCTTATCTCTTCTACATGAGACTCAactacagataaaaaaaaatgtggtttCAAAACAGGTTATTAGCAGGATAGTTAAAtcatttgtcttttctttcctgGGACACTTGCACAAGCTTTGTGTGTATACTCTTTCACTCAGACTTCAGTTGTTTGCCACACTGACGACTTTGGCACTGACTGTGAGCTGGCTCAGAAAAGTCATACTTACTCAGCTATTTAGAAATCTATATAAAGCTCAACAGCAGTGGCTAACTTTGTCAGTCTggagaaaaagcaaaataaCAAACCACACGGATATCTACCTATCCCACCCCCTCCATCTAAAATCACTCAAACTGCTCATCTGTGTTCCTCATTCCTTGCCTacagttatatattattttcttaTAGCGACAAAGGCTGAGAGAAGTTCAGGTGCTACGTCTCCAACAACACAGAACCcacatcattttttttgtatctctATTAATGTTTGACCATATAAGGGATCGTTGACAGTTTCCCCCCATCTAACAGTAaccctgttgttgtttttgtatgcaTGGTACCACTTTTGAGATGCCCCTTTGGTTGCACCTGTTATGGGAAGACTTGCACTTTCTCTCTTTGTACTATGCACTAATACTAGTATCCTCCTATTATCTCttaaaccccccacccccccaaaagGAGTTTTACTTGAACTCAGTAAAGATGGATCCTGTAATGCTCACATGGTTGTGTAtatgtaaataacacaaaacacagagagtaattgaaatgcataaataaatgaataaatagatAAACGATTAAGGTAACCAGTGAATAAGAATCTATCAGATATACAGAGTGATATAATAAAAGGATGCACCTGAAATCACAGTTTATGGCACAGCAGTATGTGCAATACATCACATTGTGGATTTGTTGTACCACAAAAGAGAAGTTTCACAGAAGGTGTTCTATTTTACCCCCCAATGTATAATGTAGATGGATAAAACTGGAGTTTATAAATtgtataaaaaggaaaaaatggtGTGTTACTTGGATCAATTACCTCCAATTGGTCTGTaaatgtaaacttttttttggtttgttatcTGCTCCGAGTCAACAAgtgctttttattttcttacatTGGTTCTTGGAGCGCGTGAAAACCGAAAAACAGGTCTGGATTTCTGTTCTCTGTCGACACAAGTTTCATTTGTTACAAATAAACTCAAGTGAaataac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10067 lncRNA downstream 182030 24811462 ~ 24812084 (-) True G7388
TU10061 lncRNA downstream 230424 24761914 ~ 24763690 (-) True G7383
TU10020 lncRNA downstream 324817 24665385 ~ 24669297 (-) False si:ch211-243a20.3
TU10027 lncRNA downstream 341893 24651943 ~ 24652221 (-) True G7352
TU10026 lncRNA downstream 351011 24642823 ~ 24643103 (-) True G7351
TU10211 lncRNA upstream 82254 25253306 ~ 25254219 (-) True G7506
TU10271 lncRNA upstream 304391 25475443 ~ 25512353 (-) True G7551
XR_005640729.1 lncRNA upstream 353803 25524855 ~ 25525679 (-) True LOC120568431
XR_005640720.1 lncRNA upstream 375083 25546135 ~ 25549752 (-) True LOC120568384
TU10300 lncRNA upstream 427646 25598698 ~ 25599084 (-) True G7577
XM_039802591.1 mRNA downstream 35846 24932476 ~ 24958268 (-) True ecpas
XM_039802602.1 mRNA downstream 43694 24933307 ~ 24950420 (-) False ecpas
XM_039802556.1 mRNA downstream 80056 24885115 ~ 24914058 (-) False clockb
XM_039794027.1 mRNA upstream 87605 25258657 ~ 25298560 (-) False si:dkey-92j12.5
XM_039793752.1 mRNA upstream 87605 25258657 ~ 25298559 (-) False si:dkey-92j12.5
XM_039793058.1 mRNA upstream 87605 25258657 ~ 25298559 (-) False si:dkey-92j12.5
XM_039792412.1 mRNA upstream 87605 25258657 ~ 25298559 (-) True si:dkey-92j12.5
XM_039784368.1 mRNA upstream 296045 25467097 ~ 25470690 (-) True smim18
TU10046 other downstream 234514 24755932 ~ 24759600 (-) True LOC120543531
TU9991 other downstream 458798 24532236 ~ 24535316 (-) True G7323
TU9657 other downstream 1183150 23774725 ~ 23810964 (-) False palm3
TU9658 other downstream 1213790 23774725 ~ 23780324 (-) False palm3
TU9637 other downstream 1225273 23752026 ~ 23768841 (-) True G7071
TU10312 other upstream 527209 25698261 ~ 25699557 (-) True G7589
TU10328 other upstream 612892 25783944 ~ 25788229 (-) True G7603
TU10486 other upstream 830472 26001524 ~ 26003263 (-) True G7722
TU10488 other upstream 830472 26001524 ~ 26009217 (-) False G7722
TU10489 other upstream 830472 26001524 ~ 26009217 (-) False G7722

Expression Profile