RNA id: XM_039793817.1


Basic Information

Item Value
RNA id XM_039793817.1
length 4291
RNA type mRNA
GC content 0.46
exon number 18
gene id pik3r5
representative False

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 22692787 ~ 22720815 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTGTATGAAGTGCAGAAGTCTTTGAACGCAGCAGAGAGCAACAACCAGATGAACCAGCCTACCAGTGACTTATTTCACTTGTTTCACTGCACTGCTCTGCTGTGCCCAGGATTTGGGTTTGTCTGTTAAACCGTGATGTGTGTGGTGAATGAATGGCAGTGGCACTGAGCTGGAGACACTTTGCCTTGGACTCTTTAGATACATACAGAAGCTATGGCTGTTGGACAGTAAACTGCAGAACCTGAGCGGTGAAGATGCAGCACACCTCATGCACAGAGGACAGGATCCAGCATGCTCTGGACAGGTGTCTGGACGGGCTGAGACAAAGTCCCACAGCAGCACATCACTGGAACGTGCTGATGTGCTCAGCGGGTCAGTCAATGAACCGCTGGAGCCTGGAGGAGCTGGTGAAAAGGGACCCTGAGAACTTCCTCATCCTGTTACAACAGATCATCAGGAAGACCAAAGAGGTTCAGGATCAGTGTCAGTATGAGCTGGTGGCTCCCCTCGCCATCATGTTCTCCTCCACATTGCTTCAGACACCATACTGTCCTCCAGACCCAGAGCTGCTGGAGGAAGCTATCAAGGTGTTTCGCTGCTTCCTCACCTGGCCTGAGCCTTACTGCAGTGTGTGTAGAAGCCTTCTCTCAACTCTACAGCTGGAGATCAAAGCCCCAGGAATTTCCTTTCAGAGACTGGTAAGAGAAGAACAGTTCCTTAACACCCCCGGCCAGTGCTCCAAGACCATGACCGTGCTGCTGATGAACCCTTGTGAGGTGCCCGCTGAGTTTCTCTTAGTGGCTGAGCAGCTCAGTCGCATTCAGCACTCGCAGGAAGAGACCTACATCACCCTGATCAAACACGCCTTCCAGTCCACACTAGGCACCAAGTACCCTCTACATAGCATCCATAGAGCCCTGCAGGCAAAAACTGTGAATGAATTGGGGGAGCTCTTCTCAGCGGTAAGTGATGTTTTAGAGACGGCCGCTGCCATGAGTGACCCTCTGAAGGGCCGCAGTCATGTAATCCACGGACTTGAGCAACTCAGGGAGAGCATGAGAATCCCAGCATCCAATGGAAGGAAGTCTGATGGAATGCTACAAACTCTTCCTTTGCCTACAGCCAAGTGTTACATGTTTCATTGGGAAAAAGATAACTTTGATGTTCTGAACACTCTTTTGGAACACGAGCCTGCTGACCAGGTCATTAACGGGCAGGCTGAGGAGGAAGTGGAGGTAGacattgatgatgatgaggaggagattgatgcagaagaagaggaggaggaagatgacaaagaagaggaggaacaTGGATTGCCTTCAATGTCTATCATACCTAATGGCTGCAGCAACAACCATCGTGCCTCCACCTTCTCCACCATCTCCTCCCTGTCCACCGCCTCCAAAGACTCCATGTTCTCCACCTTGTCCGTCACTTCAGAGTCCTACGCTCCGTCCCTCTTCTCTGTCACTTCTGGTGGTGATAGTGACTACTTTGAAGATTCGGATGACTACATCTGTTCCTCTCCTGTTGCTGAAAAATGTTCGCCAAAATCTATGAACAAAGCTTCGGCTCGGCTCAGCCAGCACTTCTACAGGCTCTTCATTAAACCCAAGAGCCCTCGGTCGCTATACCGGGCCAAAAGCTTGGGATACACAGAATCAAAAGACCTTTTCGTGGTGCGAGAGAAGCGCTCCAACTCTCTACCACAGCAAGTCAAGTTACGCTATCCTGAGCCCTTCCTCCAGCCACAAAGTCAAACTCTCAGACATGTCTGCTTCCGAAGGAGGCCCATTCTCAGCAGTGATGAGGACAGTACGAACACTACGCTGAGAGTGGTGGTGTTTGGTGCTGATCAGGTAGCAGGGAAGGTGGCCCGAGCCTACAATAgcctgaggaggaaggagagtgCATGTCCACGTCTCAGCAGGGCCTTCAAGCTTCAGTTCTTCTTTGTGCCTGTGAAGAGGGACTCAGCAGCAGGGCCCGGGAGTCTGAGGTCTCCTAATCCTGTGGTTCAATCTGGAACTCCAAAAGGAGCGGCCCTGTCTAATGATCTTCACCAAATGGGCACAGGGGACAGCACTAACGACATTGCCCATCTCCTTGGTATGTTGGACCCTTGGTATGAAAGAAACACTCTTAGCCTGCTTAACTTGCCTGCCAACGTCGTCTGTCAGCAAACCTCAAAGACGGAGTCAGAGTCATATGATAGTTCATATGAGCACCGTCTGCCCATCCTGGCCGACTTGGTCCTGTACTACTGTCGCTATGCTGGACGACCAGCTCTGATCCAACTTTACCAGGCTGAGTTGACGTTAGCTTGTGGAGAGAGGAGGACTGAGGTGTTCGTCCACTCCCTAGAGTTGGGTCACACCGCAGGAACACGAGCCATAAAGGCCATGGGTGCTGCCAGTAAGAGGTTTGGTATTGACGGTGACCGAGAAGCAGTGCCTCTAATGTTGGAGGTAGTGTACAATAAGGTGGTGATTAGTGGGAGAAGTCACTGGAAAAGAGAAACCAAAGTCTGTACGTCAGTAAACTTAACCAAAGCATGCAAGAATCCTGAGGAACTAGACTCAAAGATGGAGTGCCTGCAGCTCACAATGACTGAGGTCCTGAAGAGACAGAATTGTAAAAGCAAGAAGGGCtacaaccagCTGAGCGTGACAGAGGTGAAGGTGGACAAGGTGCAGGTCAGCGGTGCTGGTAACACAACCTTTGCTGTATGTCTGGACCAGGAcgagaaaaaaatattgcagaGTGTCACCagATGTGACATATCAGTGTGTTATAAACCTGACAGCTCCACTGACTGGAGGCTAAGAAAATCCCCGACCTCAGCCCAAATCCAGCCTCTTAACCCCACCTTCTGCTCCCTCCTCTGCCTGCCCATTGTCACATTCAGTGGGGCTCTTCCCTGAGACTGCTGACCAGTGGTTTGGATGGTTTTAAAAGAACATATTATGTGCACGTATTAATGCTCTGAATAACAGACACTAATTGCAGAAGGAAAGTGCACAGTGGCATACAATTTTGATGGTGGCCTCAATCGGCAGTGGGATGCATCTGTTGGAAACAGGAGGACTTGCACAGAAGGGCTAATCAGGAAACAGCAGACCGTCTGTGATCGTACAAATACATACCAAAGAACCTGAAAAACAAAGGACTAGAGATATAATAGTTCTAACGATGTGGAGTCCAGCtttctctgtaaaaaaaaataaaaaataaccattCACTGTTGTTAAGGAAACTGTTCAAGTTTCATTCCACAGGTTTCAGTTCCTCTTTCAGGCTGACAGAGAAGTAACCTTACCCACAGTAACATTAGAATGTAATCTGGTCAAACAGTAAATAGGTAAATACAGAGAGTACAGGCTCTCAGGTGAGATAGCACCCAAACATGGCAACAgcaatatgttgaaaaaagcctgGGTCCTACCAAGAGATGGAATGTTAAAATGGAGACATCATCTTGGAGTCAACGTTTTGAGAACTTTTGTCTTGATCAACCGACATGGAGGACCAGGGGGATATTTTACACCTGATGACCAGACTGTAATATGTAATGCCTCCATTCGGGGATGCTTCTGGGACTATATCTGAGAATGGACACTATGGACTTAcataatatgtaaatattattattgtaaaatattGCATTGCATGCTATGACTATAATGTTACACCATCATGCTTTATGTCTGTGACATCCTTATGTCTCCCATGGAGTTACAATGAAGTCACTGTTTTAACTGCAGTAATAAATATGACCAGCAGAGGGCTCTGTTGACATTCCAACCATATACTGCCTATGATTCCAACTGACTTCAGTTGAAGTACAGTACTTTGTAATATATGTAATGGAATTTATATATAGACCATATTTTAGCTCTTGCAAAGTGCTAACCTTTATTTCATCAAGGGCACAgatgtaaaatataaattttatatGTGGTGCTAAAAAAACCTTTATAAAAAGTAACTGATTCATTGTACTTTGCATACTGTAAACTATGACATTTCAGTATATAtaattgttttgttgctgtatAGGGATAATACCCTGATCATCTGATCGACTGAAATAGTACTGCACATACATATCTTACATGGAATTGAAGCACTTGAACATTAGATTAATAAATTAGGTACTTCTATgttcagatatacagtatgccTACATGTCTTTTCTGATGGAAATATTGCAAAAAACCTATTTAAAACTGTATGTGTACCATCAATGCAATGAAAACATCTAAAATTAAATCTTCATTAAAATGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU9272 lncRNA downstream 24047 22665470 ~ 22668740 (-) False LOC120565362
TU9261 lncRNA downstream 39001 22651532 ~ 22653786 (-) True G6834
XR_005639888.1 lncRNA downstream 88834 22601388 ~ 22603953 (-) True LOC120562974
TU9185 lncRNA downstream 363415 22328519 ~ 22329372 (-) False LOC120556502
TU9172 lncRNA downstream 367404 22324550 ~ 22325383 (-) True G6762
TU9327 lncRNA upstream 204016 22924831 ~ 22933891 (-) True G6879
TU9328 lncRNA upstream 252067 22972882 ~ 22973326 (-) True G6880
TU9360 lncRNA upstream 332504 23053319 ~ 23058150 (-) True G6907
XR_005638858.1 lncRNA upstream 409639 23130454 ~ 23134183 (-) False LOC120556418
TU9408 lncRNA upstream 409703 23130518 ~ 23134314 (-) False LOC120556418
XM_039811155.1 mRNA downstream 454 22665375 ~ 22692333 (-) False LOC120565362
XM_039811146.1 mRNA downstream 454 22665375 ~ 22692333 (-) False LOC120565362
XM_039811126.1 mRNA downstream 454 22665375 ~ 22692333 (-) False LOC120565362
XM_039811163.1 mRNA downstream 9050 22665375 ~ 22683737 (-) True LOC120565362
XM_039811136.1 mRNA downstream 9050 22667122 ~ 22683737 (-) False LOC120565362
XM_039794020.1 mRNA upstream 64680 22785495 ~ 22834464 (-) True stx8
XM_039814978.1 mRNA upstream 273053 22993868 ~ 22997980 (-) True mchr1a
XM_039805339.1 mRNA upstream 449992 23170807 ~ 23173617 (-) True LOC120561952
XM_039782309.1 mRNA upstream 699465 23420280 ~ 23431271 (-) True LOC120546964
XM_039782118.1 mRNA upstream 710122 23430937 ~ 23438268 (-) False znf207b
XR_005640901.1 other downstream 653636 22039009 ~ 22039151 (-) True LOC120569580
TU8945 other downstream 982975 21708540 ~ 21709812 (-) True G6592
unassigned_transcript_59 other downstream 1307944 21384771 ~ 21384843 (-) True trnar-ccg_1
unassigned_transcript_58 other downstream 1369808 21322898 ~ 21322979 (-) True trnas-aga
TU8496 other downstream 2648091 20042763 ~ 20044696 (-) False spink4
TU9329 other upstream 261110 22981925 ~ 22988500 (-) True G6881
TU9396 other upstream 367685 23088500 ~ 23164937 (-) True G6924
TU9432 other upstream 493041 23213856 ~ 23242290 (-) True G6943
TU9627 other upstream 851890 23572705 ~ 23573049 (-) True G7065
XR_005638947.1 other upstream 991012 23711827 ~ 23714086 (-) False LOC120557242

Expression Profile