RNA id: XM_039794020.1


Basic Information

Item Value
RNA id XM_039794020.1
length 1979
RNA type mRNA
GC content 0.42
exon number 8
gene id stx8
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 22785495 ~ 22834464 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TAGCTTGCCGTTATGACGTCACACCCAAACAAGAAATAGTTTGCTGGTGATTATTATTACTGCCGGGTGGTTCAAACTAAGTGGATTTTCTCTTCATTGCTTACTTTTATCATAATGTCTCAGGATCCGTGGTTACAGAATTACGATGCCAATTGTCGCTTGGCACAGGAAATAGCAGAAAACATTCATGAACGGAACAGGCAGCAGAGAACAGGGGGGAACCCTGCAAAGATCAACATGACGCTACGGGCATCACTGCAGAAGCTCAAACAGAATATTGCCCAGCTTAAAGAGGGTTTGTTGCGAGCATCATCAACTCGGCGCATAATGCAATCGGAAGCTGATAGGAGGCAGAACCTTATTGATGACCTGCTAACCAGAGAGAAGCAGCTCAATGCCACCTTCAAGGGAGACATCGCAGAGCCTGAACCTTCCAGGTCGACGTTGATGGGAGCAGAGGCAGGAACGAGTGGAGGTGTTGTGGCCAACCCCTGGCTGATCAACGAATCAGAGGAGACCTCAGGGCTGACCTTTGGCGAGatcaaacaacagcaacaacgaGTCATTGAAGCCCAGGATGCAGGCTTGGATGCACTAGCGGCTGTCATCAGCAGACAGAAGATAATGGGCAAGGAGATTGGCAATGAGCTGGATGAACAGAATGAAATCATCGACGACCTCGCACATCTTGTGGACAAGACAGACGACAGGATTCGTAACGAGACACGAAGGGTGAAGCTGGTGGAGACCAAGTCGGCCTCCTGCGGGATGCTGGTGGTGATCGTACTGCTTCTTATTGCCATCATAGTCGTCGCCGTGTGGCCTGTGTAGCAGACGAGGACAGCAGTGATCATGGACCTGTGCTCAACGACTACTACAATGACACTTTGGTGCAGAATACCAGCTTGAAACCTTTGCATCTGCAGTACACACGTACAGTCATTTAAACACTTTCTCACACAgattttatttagttattcTTCATCTTCATATTGAGACAAAGGTCACTGGTGGCTTCCCAACCAAGCCAATGTGAAATAAAGACTTAAGTCCTATAGCAGCACACTTACATTTTTCTATACAGTAAATCGTTGGTTGGGTGAAAGACATTATTAACCCtgcagaagattttttttttttctatagaatatgttgctacaatgtaaattgTCCTCTGTACCAGTTGTTCAAGTGGATATTAAAATGACAATGTATCAAATTGTTAAATTATATGGAGGTTTgtaagcctttaaaaaaaaaaaattgtagctTGGACTGTGGCAAAAAAAACCCAACAGTAGGACCTCCCGCAGGTAGCAGGAGCTTTCCTTTCATAAGTCTGGATGTGGTCTGGGCTGAGGCTCACACTGGGCACTGTAATTCCGCAAGCTTTGCAATATTCACACTCCCTTATATTTACCCATGCATTACTGTAGCAGCTGTAATGTTATCATTTGTCTTGGGATTTTATAAAGTTTATAGAATAGCTCTCAGCCAAAACAAACAGCTCGGCTGTGTAACTAACATGGCTGCTTTCCTTCCTTGTAAATCAATTCCACTTGTAATTTCtaataaatgacatttccaGTTATTAGTCCCTggactgctgtctgtctgcgtTAACGCTCAGGGTTTACTCTGGAGGATTGCAGTTTTGTAACATATTTAGCTGGAAACACTAGTATCACCATTTTTCCATAGCGAAATCTGCATAATATTGTTTTCTCTACCGTACATTTTATGAAGTGGCAACCAGTAAATGGAGGAAGGCGGACTATATTCCTTAGTGTTAACTTAACaactaaataattaaaatgtaatgattCAAATCAACAGAGGCAAATGGTTTTCAATGTAAcaagtttatttcaactgaAAATCTGAATTTAGTTCTACCAGGTTGGTCTGTTCAGTAGTTATGTCTTTCTTTAATGGCAATGATctaaacaaccacaaacaagttaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG:

id description
K08501 STX8; syntaxin 8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU9272 lncRNA downstream 116755 22665470 ~ 22668740 (-) False LOC120565362
TU9261 lncRNA downstream 131709 22651532 ~ 22653786 (-) True G6834
XR_005639888.1 lncRNA downstream 181542 22601388 ~ 22603953 (-) True LOC120562974
TU9185 lncRNA downstream 456123 22328519 ~ 22329372 (-) False LOC120556502
TU9172 lncRNA downstream 460112 22324550 ~ 22325383 (-) True G6762
TU9327 lncRNA upstream 90367 22924831 ~ 22933891 (-) True G6879
TU9328 lncRNA upstream 138418 22972882 ~ 22973326 (-) True G6880
TU9360 lncRNA upstream 218855 23053319 ~ 23058150 (-) True G6907
XR_005638858.1 lncRNA upstream 295990 23130454 ~ 23134183 (-) False LOC120556418
TU9408 lncRNA upstream 296054 23130518 ~ 23134314 (-) False LOC120556418
XM_039793817.1 mRNA downstream 64680 22692787 ~ 22720815 (-) False pik3r5
XM_039793753.1 mRNA downstream 64680 22692787 ~ 22720815 (-) True pik3r5
XM_039811155.1 mRNA downstream 93162 22665375 ~ 22692333 (-) False LOC120565362
XM_039811146.1 mRNA downstream 93162 22665375 ~ 22692333 (-) False LOC120565362
XM_039811126.1 mRNA downstream 93162 22665375 ~ 22692333 (-) False LOC120565362
XM_039814978.1 mRNA upstream 159404 22993868 ~ 22997980 (-) True mchr1a
XM_039805339.1 mRNA upstream 336343 23170807 ~ 23173617 (-) True LOC120561952
XM_039782309.1 mRNA upstream 585816 23420280 ~ 23431271 (-) True LOC120546964
XM_039782118.1 mRNA upstream 596473 23430937 ~ 23438268 (-) False znf207b
XM_039782055.1 mRNA upstream 596473 23430937 ~ 23438267 (-) True znf207b
XR_005640901.1 other downstream 746344 22039009 ~ 22039151 (-) True LOC120569580
TU8945 other downstream 1075683 21708540 ~ 21709812 (-) True G6592
unassigned_transcript_59 other downstream 1400652 21384771 ~ 21384843 (-) True trnar-ccg_1
unassigned_transcript_58 other downstream 1462516 21322898 ~ 21322979 (-) True trnas-aga
TU8496 other downstream 2740799 20042763 ~ 20044696 (-) False spink4
TU9329 other upstream 147461 22981925 ~ 22988500 (-) True G6881
TU9396 other upstream 254036 23088500 ~ 23164937 (-) True G6924
TU9432 other upstream 379392 23213856 ~ 23242290 (-) True G6943
TU9627 other upstream 738241 23572705 ~ 23573049 (-) True G7065
XR_005638947.1 other upstream 877363 23711827 ~ 23714086 (-) False LOC120557242

Expression Profile