RNA id: XM_039794278.1


Basic Information

Item Value
RNA id XM_039794278.1
length 5661
RNA type mRNA
GC content 0.47
exon number 18
gene id slkb
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 34941383 ~ 34974821 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CACGAGGAGCACGAAGAGAAAGAACCGCAGCTGCGCGCACTCGGGAACGCGCATAGACACTAAATCCGCTAGATTACTAAACCCGTTTCACACCAAGGGAAGGATTACTGTTTTCTTGTACCGTTTAAGATAATGTTAATGTACGGACCAACTGTACCCGTTTAGCCTCAAGGAAACTAATGAATTATTCTGTGGAATACAACTATTTGGGAGGACGCCTTACtcttcatttgttttcttttggttGAGAAAGAACCGCACAGGGTTGTCGGGCCAGTGGGTCGTCAGGAGTTGGAACAACGACGAGCTTCACTTACTACTTTGCATTAAAATAAAGTGTTGTTTAGGCGGATATTCAATGCTAGGACACGTCTACGTCAACCGTTAGCTATTTATTTCGGGGTTTACAATGACCCAGAGAGAAAGAGCTATTATCTGGACCGGCCAAAACAGTGTCAAAGGCTAGGCTAGGTTTTTATACTAACTATTATGAAAGCTACGTTACACTCTATTACATTCTGTGCTTACCGAGCGGATATTAATAACTAATGAGACACATATTATTTCAAAGACTTATGCTGAAGTGAACTGTTCAAGGAAACCAACACTACTTTGGCGTTTTCAAGTTGAATTCCTTTGTCAACTCGCGAATTGAATGACTAGGGTTTCAGCATGTCCTTTTTTAATTTCCGTAAAATATTTAAACTGGGAtctgagaagaagaagaaacagtaTGAACACGTGCGCAGAGATGAAAATCCAGAGGAAGTATGGGACATAATCGGTGAATTGGGAGATGGAGCCTTTGGCAAAGTGTTCAAGGCTCAAAACAAACAGACGGGAATTCTAGCTGCAGCCAAAGTTATTGACACAAAGACCGAGGAGGAGTTGGAGGACTACATGGTGGAGATTGACATCCTGGCCTCCTGCGACCACCAAAACATTGTCAAACTGCTCGACGCTTTCTATTATGAGAGCAAACTCTGGATCCTCATCGAGTTCTGTGGAGGAGGGGCTGTGGATGCAGTCATGCTCGAACTGGAGAGGCCCCTGACAGAGCCTCAGATCCGGGTGGTGTGTAAGCAGACTCTGCAGGCTCTCGTCTACCTCCATGACAATAAAATCATCCACAGAGACCTGAAGGCTGGCAATATCCTTCTCACACTGGACGGTGACGTCAAGCTGGCGGACTTTGGTGTGTCTgccaaaaacaccaaaacccTGCAGAGGAGAGACTCTTTCATTGGAACGCCTTACTGGATGGCTCCAGAGGTGGTGATGTGCGAGACGTCCAAAGACCGTCCATACGACTACAAGGCTGATATCTGGTCCCTCGGGGTCACTTTGATTGAGCTGGCACAGATCGAGCCTCCCAATCACGAGATGAACCCCATGAGAGTCCTGCTGAAAATAGCCAAGGCGGATCCTCCGACCCTGATGCAGCCATCACGCTGGTCCCCAGAATTCAGTGATTTCTTAAGGCGGTGTCTGGACAAGCACGTGGACAACAGATGGACTCCGACTCAACTTCTACAGCATCCCTTTGTGTCCAGTGTGACAGACAGCAGGCCTTTGAGGGAGCTCATAGCTGAGGCCAAGGCCGAGGTCACAGAGGAGATTGAAGAAGACcacaaagaggaagaagaagaggaagagacagaAGCACACCTGGGACACAAACGCGCCCCCTCCGACGTCAGTGTCGCCAGCTCAGAGGATGAGAAgatccccctctctccctccagcTTGGAATCCGTCCCTGAGAAGATTGAGCCGATTGTGCCCGTGCCCACACCCACTGAGCTCCCCGTGGCCAACCACGTGGTGGACACCGGCTtcgtggaggaggaggaggaggcggcggCGGCTGCCCCTGAACCTGAGGAGCACACGGAGGAGACTCCAAACACTCCAGCTGAGGATGCCGACGGAGAGGTAGAACAGAAACCAGTGGAGGAAAAGCCTCCAGAAGCAGGGGAAGATGTCGCCTCCACACAGCCAGAACCAGAGGCTGAACCAGAGGCACCTGCGAAGGAAATGCAGCAGCTGGAGATCGCAGTGGAGGATGAAAAGGAAGTGGACACAGCCGAGGTTCCAGCCAATCCACAGGCCAGCACAGAGAGTCCTGAGGTCACAGAGGTTCCTCCGGAGGAGAAGATGGCTGTTGTGGAGGAATCAAACGCaccagcagaagaagaagaagaagaggaggaggaggaggaccggTACAAAAATCTCAAGGTGACGTTGACACTACCAGAGCTAGATAAAGGTGTCCCAAAAGAGGAGAATGGAGACAAGCCCACAGAAAAGGAGAGCATAAATGCAGAGGATGAGAAGATGGTTCCAGACAAAGCTAAggatgacaaagagagagattcCGACTCGGGGAGGGGCTCAGCCGCAGACACCAGCAGTGTAGACCTGAATCTGTCTATCTCAAGCTTTCTGTCCAAAACAAAAGAGCCTGGATCTGTTTCCATACAGGACAACAAGCGTCAGAAGAAGACGTTGAAAAAGACTCGCAAATTCATTGTGGATGGAGTGGAAGTTAGCGTGACTACATCGAAGATCATCACTGACAATGATACCAAGAACGAGGAGATGCGATTCCTGAGACGCCAGGAGCTGAGGGAGCTGCGTCTCCTGCAGAAGGAGGAGCAGAGGGCCCAGCAGCAGCTCAGCAACAAGCTGCAGCAGCAAAAAGAGCAGCTGTACCGCCGCTTTGAACAGGAGACCACAAGTAAGAAGCGTCAATACGACCAGGAGGTGGAGAACCTGGAGCGGCAGCAGAAGCAGACCATCGAGAGGCTGGAGCAGGAGCACACCAACCGGCTCAGGGAAGAGGCCAAACGCATCAAAGCCGAGCAGGAAAAGGAACTCTCCAAGTACCAAAACATGCTGAAGAACCGCAAGAAAGAGGAACAGGAGTTCCttcagaagcagcagcaggatCTGGACAGCGATCTGAAAAAGATTATCCAGCAGCACAAACACGAGCTCGCCACTATCGAGAGGGACTGCCTGAACCACAAGCAGCAGCTGCTCCGAGCACGGGAGGCTGCCATGTGGGAGCTGGAAGAGCGCCATCTGCAGGAGAAACACCAGCTGTTCAAACAGCAGCTCAAGGACCAGTACTTCATGCAGAGACATCAGCTGCTCAAGAGACACGAGAAGGAGATGGAGCAGATGCAGCGCTACAACCAGCGTCTGATCGAGGAGATGAAGAACAAGCAGACCCAGGAGAGAACCAGACTGCCCAAGATTCAGCGCAGCGAGGCCAAGACCCGCATGGCCATGTTCAAGAAGAGCCTTCGCATCACCGCCGCTGTCATCACCCccgagcaggagagggagaaagtcAAGCAGTTTGCAGCCCAGGAAGAGAAGAGGCAAAAGAACGAGAGGCTCCATCAGCATCAGAAACATGAAAACCAGATGAGAGACCTGCAGCTGCAGTGTGACGCCAACATCCGAGAGCTGCAGCAGATGCAGAACGAGaagtgccacctgctcatcgaACACGAGACCCAGAAGCTGAAGGAGTTGGACGAGGAGCACAGCCAGGAGCTGAAGGAGTGGAGGGAGAAACTACGGCCCAGGAAGAAGGCCCTGGAGGAGGAGTTTGCCAGGAAGCTGCAGGAACAGGAAGTGTTCTTCAAGATGAGCGGAGAGTCCGAGTGCCTCAACCCCTCCAGCCAGAGCCGCATCTCCAAGTTCTACCCGATCCCCAGCGTCCACTCCACTGGTTTCTAGTTGAAACCTAcgtacacacgcacagacattACACACACTTGACATATACACAGTGCACACGGGAcattaggacacacacacacacacacacacacgcacacacacaccgacagtgACGACCGAGCCTGTGCTGCCTTGCTCTCATCCTCTGAGAACTGTTGGAGGGTGTACGAAGCATTTCCGTTTCTGGACCAtgttcctcagtctgcagctcTGCTCTGCAGACGCCCTCATTTTTGCTCATTTTATCATATTTCCACACCGTTGCAGGTGTTTCGAAGGAGAACTATGAAGGAGATTTTTAGATTCGGTGTTTCGGCCCTCACCACAAAACCATTAAAGTGAAGTATCTCTCTTTGCCCAACCTTCTTTTTGtgatttgaattgtttttttataaagaatCCAGTGCCTGTAGAATTTGATCTGTTTGGCTTTTAAATCCAAGCAATTTTTGTGAAGTATTTGCTGCTCAGTTTTTCTCTCATTTAGACATTTGCACTAAAGGAGGAAATAGCATCGTTACACCACTTAAAAATGCCGTTGATGGTTTCATTTGGTTAGATATGAAATAGCAGCCTTATTGTTTATAGTTGATCGTACAGTAGAATGTATTTCTGATGAAGGAGACGGAGCACACTTCTAATATCACTCGTGTTGAAGGAATGGTGATACAGTATAGTTTGTATTAAATTGCATAACTCTGTGTTAGAATTGTAGCGTGTGATGGATAAGAGGTTAAATAATGCATGATTTCAGGAACTCAGCAGAAATGATTCCTTCTTTCAgggtttttttcttcagaaTGCCTTCCTTGCGTTGCATACGGTAGAGATGGTGTTTCCGTACAGAGACAAAGGGTCACCGTTGATTGGACACTAAGGAATTCACAACGGTGACAGAAACAAAAGACTGTCCAACAAGCATTGGTGTAGCCGTTTTTTGGAccggggttttattttttttaggtaaCACCACTTTATTATTGTCGAGCAAGAAACGATCTATAGGAGAGGTATTCAGGGATGAATAAAGAATGCAATTTTTCATTGATGATGATTCTGGAAATGATATAACCTTTTTGTAAGTTTCTAGATCCAGTGTCAGGGGAAACTGAAGAAGCAAATTCAACCTACAAGCAGCTTCCAGtccatttaaacaaacaataactGAATCTGCAGTGACACCTGATGATGCATCCTTTGTATTTGCTTTGGTTTTTCTTCACATGCCTCCTCGTTTGCTACCAGGTGTATCGTGGATGGGCCTGCGTGGCGTTTCTTCTTTTAAATGAAATACTGATTTGTTGTCGTGCTAGCTAATAGCCTTAATACTTGAGAACAGCTgtatctatatactgtctacCCGATatctttaaatattttgttcaGACTCTAGGTGTTGTGCCAGTTTACCAACTTAAATGTTTTGATGACCGTGTGAAGCAAATGAACTATTTCCCAATGATTGCATCTGTATTCAAAGAAAGAAACGGAACATGAGCTCTTAGCATTTAGTTTTATGTGGGCTGATGTATTGTCAATGATGTCAAAGCTATCTGGTATTTGATgcagttgtaaaaaaaacaagatggatTTGACTGGTTTAGGCCATCTTGACTCGTGATTGGTTCATTTTATCATCTCATTTTCTTTGATTGGCTATTGAGAGTTACGGTTAGTCAAAGGTATTTAATAACTGaacttttatgtaaaaaaattgcAATGGAGTGCTGTGCACATTTTACAAAACTTTCTCAGCTAgctatttatataaaaaaaaaaaacactgcagcgCCCGTACTAGAGCTCATTTACTCAGTGGAGGTTTGCAGCGTACAGAAATAGAATTCCAAAGTCCAATCTGTTAGTTCTTGTTCTGTTGGTCAGTTAGATTctacaaaaatt

Function

GO: NA

KEGG:

id description
K08836 SLK; STE20-like kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13300 lncRNA downstream 93897 34847157 ~ 34847486 (-) True G9874
TU13292 lncRNA downstream 115929 34824632 ~ 34825454 (-) True G9867
TU13264 lncRNA downstream 215269 34723777 ~ 34726114 (-) True G9842
TU13262 lncRNA downstream 217665 34722980 ~ 34723718 (-) True G9841
TU13259 lncRNA downstream 235321 34705858 ~ 34706062 (-) True G9838
TU13430 lncRNA upstream 288224 35263045 ~ 35272052 (-) True G9967
TU13467 lncRNA upstream 428593 35403414 ~ 35404649 (-) True G9993
TU13464 lncRNA upstream 428643 35403464 ~ 35404649 (-) False G9993
TU13465 lncRNA upstream 428857 35403678 ~ 35404649 (-) False G9993
TU13476 lncRNA upstream 472107 35446928 ~ 35447270 (-) False rgs12b
XM_039824665.1 mRNA downstream 277163 34641204 ~ 34664220 (-) False fam193a
XM_039824733.1 mRNA downstream 277163 34641204 ~ 34664220 (-) False fam193a
XM_039824635.1 mRNA downstream 277163 34641204 ~ 34664220 (-) True fam193a
XM_039798458.1 mRNA downstream 380508 34556973 ~ 34560875 (-) True LOC120557822
XM_039804103.1 mRNA downstream 412285 34527053 ~ 34529098 (-) True LOC120561135
XM_039806999.1 mRNA upstream 242016 35216837 ~ 35220376 (-) True adra2c
XM_039797339.1 mRNA upstream 397196 35372017 ~ 35398518 (-) False dok7b
XM_039797330.1 mRNA upstream 397196 35372017 ~ 35398518 (-) True dok7b
XM_039816493.1 mRNA upstream 429994 35404815 ~ 35451211 (-) True rgs12b
XM_039816470.1 mRNA upstream 482118 35456939 ~ 35492359 (-) False htt
TU13113 other downstream 483748 34452850 ~ 34457635 (-) True G9740
TU12854 other downstream 1423260 33497160 ~ 33518123 (-) False stox2a
TU12774 other downstream 1657303 33283078 ~ 33284080 (-) True G9488
TU12681 other downstream 1806463 33092460 ~ 33134920 (-) True G9418
TU13477 other upstream 423819 35398640 ~ 35400474 (-) True G9997
XR_005640911.1 other upstream 502410 35477231 ~ 35477360 (-) True LOC120569607
TU13574 other upstream 609649 35584470 ~ 35586582 (-) True LOC120572869
XR_005640401.1 other upstream 969227 35944048 ~ 35969266 (-) False micall1a
XR_005640904.1 other upstream 1236307 36211128 ~ 36211215 (-) True LOC120569591

Expression Profile