RNA id: XM_039794380.1


Basic Information

Item Value
RNA id XM_039794380.1
length 5896
RNA type mRNA
GC content 0.52
exon number 39
gene id myom2a
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 8818287 ~ 8857778 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGGGTGAGAGGGTAATATTTTTGTTACCATCAGCAAGTGCTTCCCAAGCGGCATCAGGCTGGTCTTCCACCGCTTTGCGCTGTTTTAATCTCTCTGGTGTTCCAGTCATGGCTTCCAAAGTCACACCTTGGTATAAGAAGAAGCGTGTGAGCCAAGTTAAAACTGATTACGCTTATGACCacactaaatgtgtgtgtgccaagCAGCAAACAGCAGTAAGGACATCAAGCTCTAAATCGGTGAGCCAAGTGCAGGCCCAGGCCACAGTGGCTATGGCAGAACCAGCCTATACCATACCTGCGTTCCGGCAGAGGACTGCTGATGAGGGGACTGAGGAGTACCAGCGGGTGAGCACCAAAGTTGGGAAAGGACTGACTGTTATTCAGGAGGAGCTCCACAGGATGAGGGTGGCCACCAAGGCCCAAGTGGATAGTATTGCTATCCAGAGAGAGGTTAGGAACATGATGTACAAGAAGACGGATGTGTTGGATGACATCCCAAAGTTGCCGGACTTCCTGGTTGCCCTGCGGCCCCACACCGTGTGGGAGAAGACTCCCGTCAAACTGTTCTGCACTGTGCAGGGCAACCCAAGGCCCATTGTCAAATGGTATAAAGGCGGAGTGCCAGTCGACCCACTGACCGCTCCAGGAAAGTACAAGATTGAAAACAAGTATGGAGTCCACAGTTTGATCATTAGCAGGTGTGCTGTGAGTGATACTGCTGAGTACAGCGCTGTGGCCACCAACCTTCATGGCACGGCTACCAGCAAGGCTACAGTTACTGTAAAGAGAGCATCAGGATCCGGGGAGTCCTGCCAGCTTGGTTTAgTGCCCCATCTGACTGAGATCCATCCCAGTAAGCTGGAGGTCAGCATGCTCGATCGGTTCTTCGTGAGCTTTGGTGTGGAGGGCGGCTCCATCAGTCTAGTGTGTACCCTGGTGGTCGTCCCCGACCTCCCCAACCTCCCCCCCCTCGCCCAGTGGTACAGAGACGATAAACTGCTGAAACCAAGCAAGCTGGCGGAGATGTCGGTGGGTGGAGGCGCGGCCCGTCTGACGCTGCCTCACCTGGCCAAGGACGACGAGGGCCTCTACACCCTCCGCATCTTCACAAAGGACGGCACCACCGAGCATAGCGCCTACCTGTTTGTTTCAGATGCTGACCCCTCTGCGCCCGGGGCACCTGGTGCACCATTAAGCGTAAAGGCATACGACATCAACGCAGACTACGTCCTGGTTGCCTGGAAACCCCCCAACACCGTCAACGAGGTGGCAATCACCGGATACTTTGTGGATCGGTGTGAATCTGGCAGCGACACCTGGGTCCAGTGCAACGATGCCCCCGTGAAGGTTTGTAAATACCCGGTGCACGGCCTGAAAGTGGGCCACTCCTACCACTTCCGGGTCAGGGCCGTGAACAGCGCCGGCATCAGCAGGCCGTCCCGCAAGTCAGACAAAGTGACCGCCCTCGACGCTGCCGAGAGCGAGAGGCTGCAAGTGATTAAAATCGAAGGGAAATACGACATAGTGATCAAGGATGATGACCTGGAAGGCTATGTAACGATCCCGGGAGAGCCCACCGATGTGCACGCATCGGAGATTTTCAAATCGTATGTCGTGCTGAGCTGGAAGCCTCCCAGCCCTCGGGGACGAGCTCCGCTGTGGTACGTCATCGAGAAGTGCTTAGCAGGCACTGGAGCATGGCAGCGGATCAACACGGCAGTCAAACTGCACTCCCCTCGTTACCCGGTTTTTGATTTGCAAGACGGGCAAAAGTACCAGTTCCGAGTGTATTCGGTCAACTTGTACGGTTCCAGCGAGGCCTCCGAGCCCTCTGAGCCCATCCAAAAGGTGGATGAGGATGGTACGGAGCTGCCAATTGGCGTCCCGTCTGCTCCCGGTCAGGTTGTTGCCACCAGAAACACCAAGTCGTCTGTGTTTGTGCAGTGGGATGCTCCCAAACATCTGAAAAAACTCATGGGTTACTACATCGATGGCCGCATTGCAGGATCCAAGGAGTGGTTCCCCTGTAACCACAAACCCTTTAAACACACCAGGTTTGTGGTCCACGGCCTGATCCCCGGGGAGAGCTACACGTTCCGCGTCCAAGCCGTCAACGTGTATGGCCTCAGTGAGGAGTCTCAGGAGTCCTCTTCCATCACTGTGGAGCCAGCCCTCGGCAAGGGGGTGGAATATGCAACTCCCAGCGCTCCCTTCGGCATCACCCTGCTGAGCTGTGACGGCTCCTCCATGACTTTGGCCTGGAAGAGTCCCAAACACTGCGGCGGCTCCAAAGTCAACGCTTACTACATCGACAAGAGAAACGCAGACTCTTTGGTTTGGAAGGAGGTCAACCTGGCGGCCGTCACAGAGAGAATCTGCACTGTTGACAATCTGACCGAGGGAACCTTCTACGAGTTCAAGGTCCAGGCCGCTAACATGGCCGGTGTCGGCGTGCCCTCTGCTCCCAGCGCCCCGATGAAATGTGAAGCTTGGACCATGGAAGAGCCAGGCCCGGCTTACGACCTGAGCTTCagtgaggtcagaggtcagtccCTCGTCCTCCTGTGGAAGGCTCCAGTCTACACCGGAGCCAGTGCCGTCACTGGATATTTGGTGGACATGGCCAAGAAGGGCTCATCAGAGTTTGTTACTCTGACTCAGGAAGCTGTGAACCGCCGTTACCTGCAGGTGACTGGTCTGAAAGAAGGTGAAACCTACGTGTTCAGAGTTCGTTCTGTCAATGCGGCAGGTGTTGGAAAACCTTCCCAGTTGTCTGAGCCGATCTGTGCCAAAGCTCTTCCAGGCACTCAGGAGATTGTGGCTGGCGTGGACGAGGAGACTGGCGACGTCTTCCTGTCTTTTGAGGCCTGTGAGATCTGTGAGATGTCCAAGTTTGTGTGGTCGAAGAACTACAAAGCCATCGGCGAGTGCCCCAGGGTGGCCACAACAGACAAGGGCAGAACTTCCAGACTGACTTTCTCCAGCCCTAATAAAGACGATCTGGGCTCATACTCTGTGGTCGTCACGGACACCGACGGAGTCTCTGCCAGCCACACTCTGACTGAGGACGCCCTGAACACCATGCTGGAGCTCAGCTATGCCATCAGACATCCAATTATTCCTCTGAAACACGGTCTGAACTATGAGGTTTTGGAGAAGGGTCACGTGCGCTTCTGGCTGCAGGCCGTCAAACTCTCCTCCTCTGTATCCTACAGGTTCATTGTTAACGACAAGGAGGTCACATCTGGGGAGGGAATCAAGATCAGTCACGATGTGGCCACAGGGGTCATCCAGATGACGGTGGATCATTTCACCAGAGCCAACGAGGGCACTTACACCGTCCAGATCCACGATGGCAAGGCCAAAGCCCAGAGCTCCCTGGTCTTGGTGGGAGACGTGTTCAAAGCTGCTCTGAAGGAGGCCGAGTTTCAGAGGAAGGAGCACATCAGGAAGCAagGTCCACATTTCTCTGAGTATCTGTACTTCACTGTCACTGAGGATTGCACTGTTATGCTCGCCTGCAAGgtGGCCAATGTAAAGAAGGAGACGTCTTTCCATTGGTACAAAGAGGATGATGAGATTGTTCCAGAAACTCCTCCCAATGTTATGTCCGGAGCCTGCTCTCTTCCCATCCCTCTGttCTCCAGAAAAGATCATGGCATCTACAAGGCCGTACTCAGTGACGACAGAGGAAAGGACACATCTGTTTTTGACATTTCAGGCCAAGTGTTTGACGACATCATCAATGCCCTCGCAAAGAATGCTGGTGCGTCTGCCTCTGAGCTGGTGCTGCAGTGCACACCAGAGGGCATCAGGCTGCAGTGCTACATGAACTACTACACAGAAGAGATGAAGACCATCTGGAAACACAAGGAGAGTAAGATAGCCTCCTCTGAGAAGATGAGGATCGGAGGCACGGCGGAGATGGCCTGGATGCAGATCTGTGATCCATCTGACAAGGAGAAGGGTAACTACTCCATCGAGATCTCAGACGGCGTGCAGACCCACACCAGATCCTTCGACCTCTCCGGACAAGCATACACCGATGCCTATGAGGAGTACCTGAGACTTAAGGCAGCTGCATTTGCAGAGAAGAACCGCGGCAGAGTGGTCGGCGGCCTGCCTGACGTCGTCACTATTATGGAAGCAAAGTCTCTGAGCCTGACCTGCACCGTGTGGGGCGAGCCGACCCCTGAGGTCACCTGGTTCAAGAACGAGCAGGAGGTCGCCTCCACCGAGCACACCAAGGTCACGTTCGAGGGCGGCAAGTTCGCCAGCCTCGTCATCACCAAAGTCACTCCGGAAGACTCCGGCAAGTACAGCATCAACGTGCGGAACAAGTACGGCGGCGAGTTCGTCGAGATCACCGTCAGCGTCTACAAGCAGGGCGAGCAGATCCCAGAGCCCAAACTGGGACACCCCAAAACGCCTGCCGCTACACCTGCATCCACGCCTGTGCCGCCAAAGTCCCCAGCTCCCCCCTCCAAGACCCCAACCCCTGTACCTCCTAAGGCCCAGACCCCGGCATCCATGAGGAGCCAAGCCTCTACTCCCGCTTCCACCCCGATCCCCAAATCTCCAACCCCGGTCCCCAAATCTCCAACCCCGACCCCGAAGTCTCCAACCCCATCTCGCAGCGCCAAGTCGCCCACCCCACCCAGATTCATGAAGTCTCCGACCCCACCGAGGAAGTAAACGATGGTGGTGACGTTTGCTGTTAGCAACGCTGATTCATAGCATGAGTGTGAAACAATGAGGTGTTAAAGTTTATGTAGATGTTGTCACAGTTAAAAGTTAACTTCCTGACAACCACTTACAAAGGACGGGCTTCTAACCAGTTGAAGTGAAGGTTTTTTCGCATTCTCTATCATTTCTGAGAGTTGCAGGATATATACAGATACAAAAGAGGGACTTTTACAGTGGTTACTAACATAGTCaatttccttttcagtttcctTTATCATTCAACTGGTCGCTATGCTTTTGACACAGGTGGAAAAAAggcgcaaaaaaaaaagaaaaaaaatttaaaaaccagGGTAGATAGTTATGTTCAATGTTTTAAAAGCTGCACCTTCCACTATGCAACGTTAGTGGAATGcctgtatacatttttgttgtggATGTTAAAGGATAATTCACgtttattacaacttgggtcATAATTGCGCAATTTCATTTCTATCAGTGACGTCATTAAAGAGGACTGATAAGTCGAGAAACACGAGCAGTCAAACAGGTTGTAACAAACCTCCAGGTTAGACAAACTTATTtggaagagaaaataaaagaaaaaaaggctaaCTGTAAATTGATCACCCAATTTGTTTGTCGTAAACGTCCAGACTGACTTTCTGGTTTTGTGTACAATGTGGAATTATTACCAGCATTTCAGGTGTGATAGCCTTTGAGATTTACCTCCAAAAAAGTGGTTTGGATTAGGGTTTGTTTACTAACCTGTCGAATCGTGTTTCTTCCCACGTCTCTAGCGATGTCACCGTGTTCCCGGATTTTAGGGGTTTACCTCTACGAAAATAAGACAAAAGTTGTTATAAACCGGAATTACCCTTTAAGCTGGATGAACTGGGAATGGGCAAGTGCAGAGCTGGGGTTATTTTGTCAGTACCTGGGTGGGAAATTAACACCAGATaccagattatttttttgtttttgctgtggGTAGGTGATGTTCTCTCATCTATCAACAGCTACTTTGATCCCAGGTAGCCTGTCATCATTTGGAGATCCTAATGACGCCAGTTAGTGATCCTGtgaatgaaaaatattcacTTCCTGCCCTGGTCTCTATGCCAGagaggtctgtctgtctgtgacatgttgtattccccccccccaatgctTTGTGATGGCAATAAACTTTACTTATCAACCTC

Function

GO: NA

KEGG:

id description
K24495 MYOM; myomesin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4174 lncRNA downstream 17558 8800400 ~ 8800729 (-) True G2961
TU4173 lncRNA downstream 18154 8799491 ~ 8800133 (-) True G2960
TU4150 lncRNA downstream 60187 8756366 ~ 8758100 (-) True G2937
TU4072 lncRNA downstream 173096 8644195 ~ 8645191 (-) True G2894
TU4069 lncRNA downstream 175805 8641303 ~ 8642482 (-) True G2892
XR_005639204.1 lncRNA upstream 33141 8890846 ~ 8892363 (-) True LOC120558812
XR_005639319.1 lncRNA upstream 113969 8971674 ~ 8986610 (-) True LOC120559564
XR_005639324.1 lncRNA upstream 116899 8974604 ~ 8980978 (-) True LOC120559581
TU4262 lncRNA upstream 169302 9027007 ~ 9027944 (-) True G3036
TU4282 lncRNA upstream 264008 9121713 ~ 9124011 (-) True G3052
XM_039817302.1 mRNA downstream 1102 8801253 ~ 8817185 (-) True LOC120569430
XM_039807029.1 mRNA downstream 31621 8776022 ~ 8786666 (-) True ptp4a1
XM_039811772.1 mRNA downstream 78999 8732068 ~ 8739288 (-) False si:dkey-23f9.4
XM_039811764.1 mRNA downstream 78999 8732068 ~ 8739288 (-) True si:dkey-23f9.4
XM_039803243.1 mRNA downstream 211514 8575233 ~ 8606773 (-) True gpr179
XM_039800053.1 mRNA upstream 54677 8912382 ~ 8919144 (-) True dla
XM_039801061.1 mRNA upstream 86140 8943845 ~ 8954842 (-) True LOC120559379
XM_039811212.1 mRNA upstream 149234 9006939 ~ 9011578 (-) True LOC120565400
XM_039800886.1 mRNA upstream 308283 9165988 ~ 9246905 (-) True lcor
XM_039801172.1 mRNA upstream 447242 9304947 ~ 9331554 (-) True hoga1
TU4151 other downstream 50314 8758649 ~ 8767973 (-) True G2938
TU4012 other downstream 317146 8483712 ~ 8501141 (-) False wipf2a
TU3971 other downstream 608752 8207252 ~ 8209535 (-) False G2840
TU4231 other upstream 47967 8905672 ~ 8908086 (-) True G3011
TU4635 other upstream 667838 9525543 ~ 9549898 (-) False G3312
TU4646 other upstream 692276 9549981 ~ 9567228 (-) False LOC120559295
TU4721 other upstream 1168565 10026270 ~ 10042004 (-) True G3373
TU4974 other upstream 2041853 10899558 ~ 10905235 (-) True G3586