RNA id: XM_039794491.1


Basic Information

Item Value
RNA id XM_039794491.1
length 674
RNA type mRNA
GC content 0.53
exon number 7
gene id rpl9
representative False

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 26539304 ~ 26546556 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAcgtccttccttcctcctttcctctgcTACCGGCGAGaaTGAAGACCATTCTCAGCAGTCAGACCGTCGACATCCCCGACAATGTCGAGGTGAGGTTGAAGGGGCGGACAGTGACGGTCAAGGGTCCCCGTGGCAAACTCGTTAGGGAGTTCAACCACATCAACCTCGAGCTCAGTCTGCTGGGCAAGAAACAGAAGAAGCTTCGTGTGGATAAATGGTGGGGAAACAGGAAGGAGTTGGCCACAGTCCGCACCATCTGCAGCCACGTCCAGAACATGATCAAGGGAGTCACTTTGGGTTTCCGGTACAAGATGCGTTCTGTGTACGCCCATTTTCCCATCAACGTCGTCATTCAGGAGACTGGAACTCTGGTCGAGATCAGGAACTTCCTGGGAGAGAAATACATCCGCCGTGTCCGAATGAGGGCTGGTGTTAATTGTGCCGTCTCTGCTGCCCAGAAGGACGAGCTGGTGCTGGAGGGTAACGACATTGAGCTGGTGTCAAACTCAGCGGCCTTGATCCAACAGGCCACCACGGTCAGAAAGAAGGACATCAGGAAGTTCCTGGACGGCATCTACGTCAGCGAGAAGACCACTGTGGTGGAGCAAGATGCCGAGTAACTGTTCACCATGTCCTGTTATGACCAATAAAGCTACCAACTTTTCCAATTCCA

Function

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0019843 rRNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640497.1 lncRNA downstream 3580 26533833 ~ 26535724 (-) False LOC120566984
XR_005640498.1 lncRNA downstream 3580 26533833 ~ 26535724 (-) True LOC120566984
TU10730 lncRNA downstream 43539 26492902 ~ 26495765 (-) True G7921
TU10726 lncRNA downstream 83521 26455577 ~ 26455783 (-) True G7918
TU10725 lncRNA downstream 90318 26448607 ~ 26448986 (-) True G7917
TU10748 lncRNA upstream 4156 26550712 ~ 26551906 (-) True G7936
TU10776 lncRNA upstream 83225 26629781 ~ 26637840 (-) True G7948
TU10814 lncRNA upstream 136415 26682971 ~ 26690130 (-) True G7969
TU10816 lncRNA upstream 193270 26739826 ~ 26787924 (-) True G7971
TU10905 lncRNA upstream 314631 26861187 ~ 26865281 (-) True G8023
XM_039803387.1 mRNA downstream 6186 26519478 ~ 26533118 (-) True rfc1
XM_039797155.1 mRNA downstream 103517 26425091 ~ 26435787 (-) True LOC120557121
XM_039797161.1 mRNA downstream 103520 26425091 ~ 26435784 (-) False LOC120557121
XM_039802020.1 mRNA downstream 302772 26157491 ~ 26236532 (-) False pax5
XM_039802022.1 mRNA downstream 302781 26153490 ~ 26236523 (-) False pax5
XM_039794466.1 mRNA upstream 7478 26554034 ~ 26559727 (-) True ugdh
XM_039794515.1 mRNA upstream 13830 26560386 ~ 26566438 (-) True map9
XM_039794527.1 mRNA upstream 23119 26569675 ~ 26578815 (-) False smim14
XM_039794535.1 mRNA upstream 23124 26569680 ~ 26578810 (-) False smim14
XM_039794582.1 mRNA upstream 39953 26586509 ~ 26620024 (-) True pds5a
TU10744 other downstream 3568 26533852 ~ 26535736 (-) False LOC120566984
unassigned_transcript_61 other downstream 126941 26412292 ~ 26412363 (-) True trnap-agg
TU10502 other downstream 417655 26117232 ~ 26121649 (-) False adamtsl7
TU10490 other downstream 530087 26001524 ~ 26009217 (-) False G7722
TU10756 other upstream 20511 26567067 ~ 26578805 (-) True smim14
TU10758 other upstream 21058 26567614 ~ 26578805 (-) False smim14
TU10760 other upstream 21058 26567614 ~ 26578805 (-) False smim14
TU10761 other upstream 21058 26567614 ~ 26578805 (-) False smim14
TU11635 other upstream 2759465 29306021 ~ 29339824 (-) False rnf24

Expression Profile