RNA id: XM_039794562.1


Basic Information

Item Value
RNA id XM_039794562.1
length 4361
RNA type mRNA
GC content 0.52
exon number 34
gene id pds5a
representative False

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 26586509 ~ 26620024 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGAGAGAGGAGGGCTCAGGGCGACGGTAGCAGCCCTTCTTCGCCTGTAAACTAGCGGCAGTACGGGGCGATGCgttgaagttgaaaaaagacAGTAAAAGGCCAGTAGAAGACCGTGTGGACCATACACCAACAAGCATGGAGTTCCCGCAACAGCAGAAACCGGCGGGGGAAGGAAAAATCATATATCCTCCTGGAGTGAAGGAGATTACGGACAAAATCAGCAACGATGAGGTGGTCAAACGGTTGAAGATGGTGGTGAAAACCTACATGGACATGGACCAAGACTCTGAAGAGGAGAAGCAGCAGTATCTTGGCCTGGCGCTCCACCTCGCCTCAGAATTCTTCCTCAGGAACCCCAATAAAGACGTAAGGCTACTGGTGGCCTGCTGCCTGGCTGACATCTTCAGGATCTATGCTCCCGAGGCCCCCTACACCTCCCACGACAAACTCAAGGACATCTTCCTGTTCATCACCAGACAGCTAAAGGGACTGGAAGACACTAAGAGCCCTCAGTTCAACAGATACTTCTACCTGCTGGAGAACCTGGCATGGGTGAAGTCGTACAACATATGCTTTGAACTGGAGGACTGCAACGAGATCTTCATCCAGCTTTTCAAAACACTCTTCTCTGTCATCAATAACAGCCATAACCAGAAGGTACAGATGCACATGATAGACCTGATGAGCTCCATCATCATGGAGGGTGACGGAGTCACACAGGAGCTGCTGGATACCATCCTCATTAACCTCATTCCTGCACACAAGAATCTGAACAAGCAAGCGTACGATCTTGCCAAGACTCTGCTGAAGAGGACCGTCCAGACCATCGAGACATGCATTGCTAACTTCTTCAATCAGGTTTTAGTGATGGGCAAGTCATCAGTCAGTGACCTATCAGAGCACGTATTTGACCTCATCCAGGAACTGTTTGCTATCGACCCTATGCTGCTTACCTCTGTCATGCCACAGCTGGAATTCAAACTTAAgAGCAATGATGGCGAGGAGCGTCTAGCTGTTGTACGGTTGCTAGCGAAGTTGTTTGGGGCCAAAGACTCAGAGCTGGCCTCACAGAACAGACCACTGTGGCAGTGCTTCTTAGGACGGTTCAATGACATCCACGTTCCAGTCAGGCTAGAGTGTGTAAAGTTTGCCAGCCACTGCCTcatgaaccacccagacctggccagagacctgacagAGTATTTGAAGGTGCGCTCCCATGACCCAGAGGAAGCCATCCGTCATGATGTCATTGTCACCATTATCAACGCTGGGAAGAAAGACCTTAACTTGGTCAATGACCAGCTGTTGGGCTTCGTACGGGAAAGGACCTTAGACAAGAGGTGGCGTGTGCGTAAAGAGGCCATGATGGGCCTTGCTCAGCTTTTTAAGAAATACTGTCTGCACCATGAGGCTGGGAAAGAGTCTGCCGGGAAGATCAGTTGGATCAAAGACAAACTGCTGCACATCTACTATCAGAACAGCATTGATGACAAGTTATTAGTAGAGAAGATCTTCGCTCAGTACATGGTCCCTCACAGTCTTGACACAGAGGAGAAGATGAAGTGTCTGTACTACCTGTATGCCTGCCTGGACACAAACGCTGTCAAGGCCCTGAATGAGATGTGGAAGTGTCAGAACATGCTCAGAAGCCTCGTCAAAGAGCTGCTTGACCTCCACAAGCTGCCAGTGTCCGAGGCTAATAGCACAGCCATGTTTGGGAAGCTGATGAGTATTGCCAAGAACCTGCCAGATGCTGGAAAGGCCCAGGACTTCATGAAGAAGTTCAACCAGGTTCTGGGTGAGGACGAGAAGCTCAGAGTTCAGCTGGAGATGCTCATCAGCCCGACGTGCTCCTGCAAACAGGCTGAGATCTGTGTGAGGGAGATCACTCGGAAGTTGACGTTCCCCAAACAGCCCACCAACCCGTTCTTGGAGATGGTTAAGTTCCTGCTGGAGCGCATCGCCCCCGTCCACATCGACTCTGAGGCCATCAGtgCTCTGGTGAAGCTGCTGAACAAGTCCATTGAGGGCACAGCTGACGACGACGAGGAGGGCGTTACCCCTGATACAGCCATCCGCTCTGGCCTGGAGCTGCTCAAGGTCCTGTCGTTCACCCACCCCACAGCGTTCCACTCAGCAGAAACCTACGAGTCTCTGTTGCAGTGTTTGAAGATGGAGGATGAAAAAGTGGCAGAGGCAGCCATCCAGATATTCAGAAACACAGGGCAGAAGATTGAGACAGAGCTACAACAGATAAGATCGACTCTGATTCCCGTCCTGCATCAGAAAGCCAAGCGGGGAACACCTCACCAGGCCAAGCAGGCCGTCCACTGTATCCACGCCATCTTTAATAACAAGGAAGTGCAGCTGGCACAGATTTTTGAGCCTCTGTCACGTAGTCTGAATGCAGACGTCCCAGAGCAGCTCATTACTCCTCTGGTGTCCCTGGGCCACATCTCCATGCTGGCCCCAGATCAGTTTGCTTCACCAATGAAGTCCATTGTGGCTAACTTCATTGTCAAGGATTTGCTCATGAATGACAGGTCGGTGGGAAACAAGAATGGGAAGCTGTGGACCACTGATGAGGAAGTTTCACCTGAGGTCCTAGCTAAGGTGCAGGCCATCAAGCTGCTAGTGCGTTGGTTACTAGGAATGAAGAACAACCAATCCAAGTCAGCAAACTCCACCCTGCGCCTGCTGTCAGCAATGCTGGTCAGCGAGGGAGACCTCACAGAGCAGAAGAAGATCAGTAAGTCAGACATGTCTCGTCTGAGGCTTGCCGCAGGTGGAGCCATAATGAAGTTGGCCCAGGAGCCCTGTTACCATGACATCATCACACCTGAACAGTTTCAGCTCTGCGGCCTCGTTATCAACGACGAGTGCTACCAGGTTcgtcaaatctttgctcagaAGTTGCACCTGGCTCTTGTCAAACTGCTGCTGCCCCTGGAGTACCTGGCCGTCTTCGCCCTGTGTGCCAAGGACCCAGTGAAGGAGCGCCGCGCCCATGCCCGGCAGTGCCTCCTCAAAAACATTTCTGTCCGCAGAGAGTTCATCAAACAAAACCCTCTCGCTCAGGATAAACTTGTCTCCCTCCTTCCTGAGTATGTCGTTCCCTATATGATCCACCTGCTGGCCCACGACCCAGACTTCACGAAACCACATGAATATGAACAGCTCAAAGACATCAAAGAgtgccTGTGGTTCATGCTGGAAGTGCTGATGACCAAGAATGAGAACAACAGTCACGCCTTTCTAAGGAAGATGGTAGAGAACATCAAACAGACCAAGGATGCACAGTGTCTTGATGATTCAAAGGCCAatgagAAAATGTATATTGTCTGCGATGTGGCCCTCTTCGTTATCGCCAACAAGAGCACTGCATGTCACCTGGACTCTCCAAAAGACCCTGTTCTACCCTCCAAGTTCTTCATCATACAGGACAAGGACTTCAAAAATGATAAAGAGTATCTGTCGACAGAGATGAGACAAATGCTGCTCACTGGAAAGCCTAAACCAGCTCCAGTGTTGGGAGCTGTGAACAAGCCTCTGACGGTACCAGGGAGGAGGATCTTCACCAAGACCACCACAGTCTCAGACACCAGTAACCCCAGCACCAACTCCTCCCCACTGAGCTCCTCAACTATCAATAAGAACAGTAACAGCAATGCTGCCACTGAGTCATCAGAGAGCCAAACGCAGGAAAACGACGAGAACCCagtcatcaagaatgaagaggGGAAGAAGGAGGAGCCAAGTCAGATTGCGACCCCTGACGCCGAGACAGAAGCGTCGCCCGTCAAACGACGTGGCCGTCCATCaaaaacagctgctgctgctgctcctgcgGCGGCTGAAAAGGAAGGAGCTGCGGCAGCAACGGGAGGTGGAGCTGgcagaggaaggaagagagcAGCTGACCCCAACTCCAACCCATCGGCAGCGTCAATCAACCTCAAGATgtcaaaacagcagcagcagaatgaCGAAGGGACAAAGAGACAGATTGACTTGCAGAGGTGGTCACATGTGAGCACAGAGaaggacaaagagagaaagtggGAGCCTGAAGAGGAGACAGGGAGAGCTGTAGGGACAGTCGCCCTCCTCCTGGGCAGCGAGGGCGACACTGAGCTAGAGCTGGAGTCCAGCCCAGAGGGGGTTATCTGTGGCAGGAATGACAGGGAGGGATACCCCCTCAAGCAAGGGCAGAGCAGCTGTGCAGCCTGGTCCGACCCATTTAGCCAGGGAGATACCAAGTCTACAAGGAGAGGAGTTCCTTCTGGCAGGCAGGGAGAGCCCAACAGTAGGCTGGCAGTAAAGAGGAGACCGGTGAAGGTGAAATCAAGACTGTAG

Function

GO:

id name namespace
GO:0003677 DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10748 lncRNA downstream 35713 26550712 ~ 26551906 (-) True G7936
XR_005640497.1 lncRNA downstream 51895 26533833 ~ 26535724 (-) False LOC120566984
XR_005640498.1 lncRNA downstream 51895 26533833 ~ 26535724 (-) True LOC120566984
TU10730 lncRNA downstream 91854 26492902 ~ 26495765 (-) True G7921
TU10726 lncRNA downstream 131836 26455577 ~ 26455783 (-) True G7918
TU10776 lncRNA upstream 10035 26629781 ~ 26637840 (-) True G7948
TU10814 lncRNA upstream 63225 26682971 ~ 26690130 (-) True G7969
TU10816 lncRNA upstream 120080 26739826 ~ 26787924 (-) True G7971
TU10905 lncRNA upstream 241441 26861187 ~ 26865281 (-) True G8023
TU10906 lncRNA upstream 247679 26867425 ~ 26873605 (-) True G8024
XM_039794527.1 mRNA downstream 8804 26569675 ~ 26578815 (-) False smim14
XM_039794535.1 mRNA downstream 8809 26569680 ~ 26578810 (-) False smim14
XM_039794515.1 mRNA downstream 21181 26560386 ~ 26566438 (-) True map9
XM_039794466.1 mRNA downstream 27892 26554034 ~ 26559727 (-) True ugdh
XM_039794491.1 mRNA downstream 41063 26539304 ~ 26546556 (-) False rpl9
XM_039796414.1 mRNA upstream 73599 26693345 ~ 26780248 (-) False slit2
XM_039796378.1 mRNA upstream 73599 26693345 ~ 26780248 (-) False slit2
XM_039796394.1 mRNA upstream 73599 26693345 ~ 26780248 (-) False slit2
XM_039796387.1 mRNA upstream 73599 26693345 ~ 26780248 (-) False slit2
XM_039796403.1 mRNA upstream 73599 26693345 ~ 26780248 (-) False slit2
TU10756 other downstream 8814 26567067 ~ 26578805 (-) True smim14
TU10758 other downstream 8814 26567614 ~ 26578805 (-) False smim14
TU10760 other downstream 8814 26567614 ~ 26578805 (-) False smim14
TU10761 other downstream 8814 26567614 ~ 26578805 (-) False smim14
TU10744 other downstream 51883 26533852 ~ 26535736 (-) False LOC120566984
TU11635 other upstream 2686275 29306021 ~ 29339824 (-) False rnf24
TU11633 other upstream 2686302 29306048 ~ 29339824 (-) True rnf24
TU11778 other upstream 2969562 29589308 ~ 29593623 (-) True G8701
TU12128 other upstream 4351642 30971388 ~ 30974612 (-) True G8975
TU12451 other upstream 5319975 31939721 ~ 31948554 (-) False znf827

Expression Profile