RNA id: XM_039795568.1


Basic Information

Item Value
RNA id XM_039795568.1
length 1951
RNA type mRNA
GC content 0.51
exon number 9
gene id sgsh
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 17155731 ~ 17161156 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAATACAAATGGTCCAAAAACCGTCTGGCACACAGCTCTACTCGCCACGTTATGTACGTTAGGTAATAACTGTGATGACTgaattaatattatttattgaatgtaattgttttgaCTCACATTAAATGTTTCAAAGCCGAACCAGAAATCATTTTGAGACTAGATTAGTAGGCGAGATCTAAACCGTCAAAAGGGCTAATCATCGTCGTTACGACCATGCTGCTTGAgttgttttttctcattttggcATCATGTTGCATCGGGGAGTCAAAGAGAAGAAATGTCCTTCTAATAATTGCTGATGATGCAGGTTTTGAGACGGAGGTGTATAACAACTCTGTGGTCCACACCCCCCACCTGCGCTCTCTGGCCCAGCGTAGCCTGGTGTTCAGCAACGCCTTCACCTCTGTCAGCAGCTGCTCCCCCAGTcgctccaccatcctcaccggcctgccacagCACCAGAACGGCATGTACGGGCTTCATCAGGGTGTTCACAATTTCAACTCGTTTGACGGAGTACAAAGTCTGCCGCTGCTCCTCAGCCAAGCCAACGTACACACAGGTATAATTGGGAAGAAGCATGTCGGTCCTGGATCTGTATACCCTTTTGATTTTGCCTACACTGAAGAGAACAACTCTGTCCTCCAGGTGGGGAGGAACATCACCCGTATCAAACTCCTGGTCCGAAAGTTTTTCCAGACACATAACCAAGAAGCCTTTGAACGAAGGCGAAAGAAAGACGAgaataaagaaaatgtgaaagaTGAAGAGAAGCCGTTTTTCCTGTATGTtgcctttcatgacacccacCGATGTGGACACTCGCAGCCCCAGTATGGAGCTTTCTGTGAGAAGTTTGGGAATGGTGAAATGGGGATGGGTAGAATACCGGACTGGACCCCAGAATATTACACACCAGAACAAGTAAAGGTTCCTCCTTTTGTGCCAGACACACCTGCGGCACGAGCCGACTTGGCTGCACAGTACACCACGGTTAGCAGGCTGGACCAAGGTATCGGTTTGGTTCTTCAGGAGCTCAGGGACGCTGGTTATGAGAACGACACTCTGGTCATCTACAGCTCCGATAACGGCATCCCCTTTCCGAACGGCAGAACCAACCTGTATCGCTCTGGGACAGCAGAGCCCATGCTGGTGTCTTCTCCAGAGCACAGGGAGCGATGGGGAGACACCAGCCAGGCCTACGTCAGCCTGCTGGACATCACTCCCACCATTCTGGAATGGTTCTCTGTTCCCTATCCATCCTACAGCCTCCCCGGCAGCCCCGCCACCCTGGTTCACCTCACCGGTCGCTCCTTACTGCCTGCTCTGGTCGCTGAGCCCGGCAGCTGGCACACCGTCTACGCCAGCCAGTCCCTTCACGAGGTAACCATGTACTACCCAACCCGCTCCGTCCACCAGGGGGCGTACCACCTTCTCCACAACCTACACTACCGCATGCCCTTCCCCATCGACCAGGACCTGTACGTGTCACCCACCTTCCAGGACCTGCTGAACCGCACGAGGCTGAGTGAGCCCACGCACTGGTTCAAAAGCCTGGAGCAGTATTACTACAGAGAGCGCTGGGAGCTGTTCGACTCCAGGACAGACCCACTGGAAACGAGGAACCTGGTATCAGACCCAAACTACAGCGCCGTGCTGGAGAGCCTGAGGCAGAGTCTGCAGAAGTGGCAGTGGGAGACGGGGGACCCCTGGGTCTGTGGACCTGACTACGTCCTGGAGGACAAACTAGAGCCACACTGCAGACCACTCTACAATGGACTCTGATGGACACTACTGGTGCTTTGACTCATCTTGATCGACACGATGTCCACGCACATGAACACATTCttctttataaaataaataacattcatatgtagttttatttttgtatgtcaGTGCTACTTTTTTAATTctaaaaataaacttaaattgCCTTAATTCCTAA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0008484 sulfuric ester hydrolase activity molecular_function

KEGG:

id description
K01565 SGSH; N-sulfoglucosamine sulfohydrolase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7243 lncRNA downstream 33513 17114975 ~ 17122218 (-) True G5361
TU7110 lncRNA downstream 74334 17079161 ~ 17081397 (-) True G5270
TU7108 lncRNA downstream 76713 17076316 ~ 17079018 (-) True G5268
TU7109 lncRNA downstream 81711 17071797 ~ 17074020 (-) True G5269
TU7107 lncRNA downstream 84003 17070177 ~ 17071728 (-) True G5267
TU7261 lncRNA upstream 17243 17178399 ~ 17185803 (-) True G5375
TU7264 lncRNA upstream 21491 17182647 ~ 17186382 (-) True G5376
TU7300 lncRNA upstream 87829 17248985 ~ 17251464 (-) True G5393
TU7332 lncRNA upstream 150414 17311570 ~ 17311817 (-) True G5418
TU7313 lncRNA upstream 156120 17317276 ~ 17317820 (-) True G5402
XM_039795539.1 mRNA downstream 1227 17152922 ~ 17154504 (-) True npb
XM_039803688.1 mRNA downstream 160090 16985394 ~ 16995641 (-) False notum1b
XM_039803681.1 mRNA downstream 160111 16985394 ~ 16995620 (-) True notum1b
XM_039805535.1 mRNA downstream 189506 16957612 ~ 16966225 (-) True tmc8
XM_039795714.1 mRNA downstream 198399 16946866 ~ 16957332 (-) True LOC120556225
XM_039801873.1 mRNA upstream 85393 17246549 ~ 17256447 (-) False LOC120559819
XM_039801851.1 mRNA upstream 85393 17246549 ~ 17256447 (-) False LOC120559819
XM_039801889.1 mRNA upstream 85393 17246549 ~ 17256284 (-) False LOC120559819
XM_039801867.1 mRNA upstream 85393 17246549 ~ 17256284 (-) False LOC120559819
XM_039801881.1 mRNA upstream 85393 17246549 ~ 17256284 (-) False LOC120559819
TU6856 other downstream 807809 16345770 ~ 16347922 (-) True LOC120558720
TU6504 other downstream 1726175 15426544 ~ 15429556 (-) False sdk1a
TU6236 other downstream 2251522 14901150 ~ 14904209 (-) False ubl5
TU6167 other downstream 2436629 14712203 ~ 14719102 (-) True LOC120555938
TU5715 other downstream 3588465 13531753 ~ 13567266 (-) True G4168
TU7590 other upstream 549490 17710646 ~ 17713898 (-) True LOC120560175
TU7616 other upstream 669536 17830692 ~ 17835761 (-) False epn3b
TU7631 other upstream 682780 17843936 ~ 17845404 (-) False LOC120556682
TU7664 other upstream 718712 17879868 ~ 17881759 (-) True LOC120556582
TU8084 other upstream 1723812 18884968 ~ 18890220 (-) True G5930

Expression Profile