RNA id: XM_039796378.1


Basic Information

Item Value
RNA id XM_039796378.1
length 7117
RNA type mRNA
GC content 0.50
exon number 40
gene id slit2
representative False

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 26693345 ~ 26780248 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ttctcggGAGAAGCGCTTTGACGCACCACGCAGAGTTGGATTATAGTATTGCGCGCTGGTCTTTAACGGGGCTTTTTCCTCCCTCACTGTCTACACCCTTGTCACTGACCGGCCATTGATATACATGTGTGATCGGAATCAATATCTCTCCACCTGCTGAGCTTTTTGGAAAAACCGAGCGCTGCCATTGACTCCTCTCTACGGACGCGTGTTGTGAATTAATAACCAAGACAGCCTCACctggagtgtatgtgtgtgtgtaggctatgtgtctgtgtatatatgctctataagtgtgtgtgagagtgtgtttttCTGGATCATATTGAGGAGCGAGGTGTTTCACTGGCTTGGttccgcacacacacatacacagacacatcacacaCCGTGGGGATTTGGGCACCGCATGCCGGGGACATGTGGAAGTTTGCGCCGCTGTAGCGCAGCCAGAGAGCCGGTCCACCGCCTCGTCGACCTCCTCTCTCACTGTCCAGGGGGACCAAATTCCTGGTTCACAGCCTTCACACATCGAAACCCCCTCTAAGAAGACCCAAATGTAAATTCAGAAAGAGACATTTCAGAAACACGTCTGAAAGGGGAGGACAGCGAAAACGAGGACGGCATCCCGTTGCGTGCAGAGTTTGGTGAATTGTTTCGGGGATTTcagagcttttattttttttaacgccCTTGCATTTTCTCAGTATTTTGTGGGTCTCATATTGGACCCCCACTTGCCGCAGTGATGGTGGGAGCTCTGAGCCCCGTTGGCCCTGGCCGCTCCCCGGTGACTGCGTTGGGACTGCTGGTGGCTGTTCTGGTATCGGTCCTGTCCGGCGGAGCGGACGGCCAGCCCTGCCCGGCCCAGTGCTCCTGCACCGGGACTACAGTGGACTGTCACGGCCAAGGGCTCCGCAGCGTGCCCAGGAATATACCCCGCAACACGGAGAGACTGGATCTGAATGCAAACAACCTCACTAAAATCACCAAGGCGGATTTTGCAGGACTGAGGCATCTGCGAGTGTTGCAGCTAATGGAGAACAAAATCACCACAATCGAGAGAGGGGCCTTCCAGGACTTAAAGGAGCTGGAGAGACTGCGCCTGAATCGGAATAATCTGGCCGTCTTCCCCGAGCTGCTTTTCCTGGGAACAACAAAGCTTTACAGACTTGATCTCAGCGAGAATCAGATTCAGGGGGTTCCAAGAAAAGCCTTCAGGGGAGCTGTGGAAATCAAGAACCTccaGTTGGACTACAACCACATCAGCTGTATTGAAGATGGAGCTTTCCGAGCGTTACGTGACCTGGAAGTGCTcaccctcaacaacaacaacatcagccGACTGTCTGTAGCCAGTTTCAACCACATGCCGAAGCTCAGGACCTTTCGCCTGCACTCCAACAACCTGCAGTGTGACTGCCACGTGGCCTGGCTGTCAGAGTGGCTGCGACAGCGCCCCCGTCTGGGTCTTTACACGCAGTGCATGGCTCCGCCACACTTGAGGGGGCACAACGTGGCTGAGGTGCAGAAGAAGGAGTTTGCCTGCACAGGTCACCAGTCGTCATCAGCTACCTCCTGCAGTGTGTTACAGTGCCCAGAGTCCTGCACCTGCAGTAACAACATCGTGGACTGCAGAGGAAAGGGACTGACTGAAATACCCACCAACCTGCCTGAAACCATCACTGAGATACGACTGGAGCAGAACGCCATCAAGGTGATCCCAGCTGGAGCCTTTTCTCCTTATAAGAAGCTGCGCAGGATAGACTTGAGTAACAACCAGATATCAGAGTTAGCCTCGGATGCCTTCCAAGGCCTGCGCTCTCTCAACTCTCTGGTGCTATATGGGAACAAGATCACTGAGATTTCTAAAGCACTGTTTGAGGGACTGTTTTCTCTGCAGCTATTGTTACTGAATGCTAATAAGATAGCGTGTCTGCGTGTGGACGCATTTCAGGACCTCCACAACCTCAATCTGCTTTCACTATATGACAACAAGCTCCAGACCATCGCCAAGGGGACCTTCTCGTCACTAAGAGCCATACAAACGCTTCACTTAGCCCAAAACCCATTTATCTGTGACTGCCATCTGAAGTGGCTGGCAGATTACCTGCAAGACAATCCCATTGAGACAAGCGGTGCCCGCTGCACAAGCCCCCGGCGCCTCGCCAACAAACGAATTGGACAAATCAAGAGCAAGAAGTTCCGCTGCTCAGCAAGAGAACAGTATTTCATCCCAGgAGTACACCATGTCGGCTGTACTGAGGATTACCGCAGTAAGCTGGGAGGAGACTGCTTTGCAGACTTGGCCTGCCCCGAGAAGTGCCGTTGTGAGGGCACCACAGTCGACTGCTCCAACCAAAAACTTACCAAAATACCAGATCACATCCCTCAGTACACCGCCGAACTGCGTCTGAACAACAATGAATTCACTGTGCTTGAGGCGACAGGGATCTTCAAAAAGTTGCCTCAGCTGAGGAAGATTAACCTGAGCAATAACCGTATCACTGACATAGAGGAGGGGACATTTGATGGAGCCTCAGGGGTCAATGAGTTGATTCTGACCTCCAACAGACTGGAGAACATACACCACCGCATGCTGAAGGGACTCAGTGGCCTCCGCACACTtatGCTGAGGAGTAACCGTATCAGCTGTGTGAGTAACAGCAGCTTCGTGGGGTTGAGCTCAGTCCGTCTCCTGTCGCTCTACGACAACCAGATCACCTCAATGAACCCTGGAGCCTTCGACACACTGCATTCCCTGTCCACACTcaACCTTCTGGCCAATCCCTTCAACTGTAACTGTCACCTGGCTTGGCTCGGTGATTGGCTGAGAAGGAAACACATCGTCACTGGTAACCCTCGCTGCCAGAGTCCTTATTTCTTGAAGGAGATCCCCATCCAGGATGTAGCTGTCCAGGACTTTGCCTGTGAAGATGGTAACGACGAGAACAGCTGCTCTCCAGTGCTGAGGTGTCCAGCAGAGTGTTCCTGTCTAGACACTGTGGTGCGCTGCAGCAACAAGGGCCTCACCACACTGCCCAAAGGCCTGCCCAAAGAGACCACTGAACTGTATCTGGATGGTAACCACTTCACTCAGGTTCCTGTGGAGCTCTCCAATTACAAACACTTAACACTCATTGATTTGAGTAACAACCAGATCAGCACGTTGTCCAACCACAGCCTCAGTAACATGTCCGAGCTGCTTACCCTAATCCTGAGCTACAACCGCCTGCGGTGCATACCAGTGAGAGCGTTCGATGGACTCAAGTCTCTCCGTTTGCTGTCTCTCCATGGTAACGACATATCACTGATACCAGAGGGAGCCTTCAAAGACCTGTCATCGCTCTCCCACCTGGCTCTGGGTGCCAACCCTCTGTACTGTGACTGCCACATGCAGTGGTTGTCAGACTGGGTGAAGAGCGGCTACAAGGAGCCTGGCATCGCCCGCTGTGCCGGGCCCGGTGACATGACGGACAAACTGCTGCTTACCACGCCTTCCAAGAAGTTTACCtgcacagAAGTCCCGGGGCCTTGTGGTTTTCTGGTGCCAGGTCCAGTTGATATGAGTGTCCAGGCTAAGTGTGAGCCCTGTCTGTCCAACCCCTGCAAGAACGATGGCACCTGCTCTAATGACCCAGTGCACTACTACCGCTGCACCTGCCCCTATGGATTTAAGGGACAGAACTGTGAGGAGCCCATTCATGCCTGTATCAGTAACCCGTGCCAGAATGGCGGCACTTGCCACCTGAAGGAAGGAGAAGGGAGCAACTTTTGgtgtgtgtgtccagaggGCTTTGAAGGCGACGGATGTGAGATCAACATCGATGACTGTGAGGACAACGACTGTGAGAACAACTCCACCTGCGTTGATGGAATTAACAACTACACATGCATGTGCTCACTAGAATACACAGCTGCTACCAATGAGGTGGAGAGAGgGGAGTTATGTGAAGAGAAACTAGATTTCTGCGCTCCAGAGCTGAACCCATGTCAGCACGACTCAAAGTGCATTTTGACCCCTCAGGGATACAAGTGTGAGTGCACTCCAGGCTATGTAGGTGAGCACTGTGAGCTGGATTACGACGACTGTGAAGAGAACAAGTGTCAGAACGGAGGTCAGTGCATTGACGCAGTCAATGGATACACCTGCGTCTGTCCTGAGGGATACAGTGGGTTATTCTGTGAGTTCTCTCCCCCGATGGTCCTTCCTCGCACCAGCCCCTGTGACAACCATGAGTGCCTCAACGGGGCGCAGTGTGTTGTCATGGGATCGGACCCCCGCTGCCAATGTCTCCATGGCTACAAGGGCGATCGCTGTGAGACGCTGGTCAGTGTCAACTTTGTCAACCGCGAGTCCTACCTGCAACTTCCATCCAGTCTCCTCTCACCGGACACCAACATCAGTCTACAGATTGCTACAGATGAGGACAGTGGCGTGTTGTTGTATAAAGGGGACAATGATCATATTGCCATGGAACTGTACAGGGGACGCCTCAGGGTCAGCTACGATACTGGATCTTACCCTCCTTCAGCTATATACAGtgtggAGACAGTGAATGATGGTAGCTTCCATGCTGTGGAGTTGGTAGCATCAGACCAGACTTTGTCTCTGTCCATCGACGGCGGGCCGCCCAAATCCATTAACTCCATCAGCAAACAGTCCACACTCAACATAGATTCTCCGCTTTACCTGGGAGGTATGCCAGAACGCGCCTCAGCCTCCGGGGGTCTCTCGTCCATGCAGCAAAGCTCAGGCGGACGCAACGGCACCAGCTTCCACGGCTGCCTCCGTAACCTGTACATCAATGGGAAGCTGCAGGACCTGGGGGCAGGGCTGGGGACAAGGGCTCCAGGCTCTGGGACTGCACAGAGCACCACCAGACAGTGGCTGGGCCACGGGGTGGAGCCAGGCTGCCAGCCCTGCCAGAGGGGAGCCTGTGTCCAAGGTGACTGCCACCCAACAGGGCATCGTGGCTTCACCTGCACCTGCCACCCGGGCTGGACGGGAACAGTGTGTGACCAGCAAGTTAACAATCCCTGTGATGGCAACAAgTGTATCCATGGTACCTGCCTTCCAATCAACTCCTACTCCTACTCCTGTCGCTGCCAGCCTGGTTTTGCTGGTGTACTCTGTGATGAGCAGGACCAGGATGCAGCTAACCCCTGTAGTCTGTCTCGCTGCAAACATGGCAAATGTAGAGTGTCTGGCCTGGGCAAGGCATACTGCGAGTGTAACAGTGGATATACAGGAGAGGCGTGTGACAGAGAGGTGGCCTGCCGAGGGGAACGGGTCCGAGATGTCTACCAGAGACAGCAAGGCTACGCGGCGTGCCAAACCCAGGAGAAGGTCTCCCGCCTAGAGTGTCGGGGCAGCTGCCCGGGGGGAGCAGAAGGACAGGGCCCCTGCTGCACCCCCCTCCGCAGCAAACGCAGGAAATACACCTTCCAGTGCACTGATGGCTCTTCTTTCGTCCAGGAAGTGGAGAAAGTGGTCAAGTGTGGCTGTACACAGTGTTCctcataaaaaaataagaaaataaaaacaacaaaaaagagacaACACCCTTGGCAGGTTTCCTCCTATCCAGATATGTTTTATGTTCTTGCCCGCCTTACTTGATCCCCGTCCCCCTTGTCCAAGGTCCCGATTCCTCCTGAGAAAACCCTTCACCCTCCACAGTCCCCTCCCCCACCatccctgttttgttttttttaaaaacccttaaaaaaaaagcaacaaaaaaaaacaagagaaacaACTAAAAAatagtttcttttctttgtcagtGCTGGACTGATGATTGATGCTTCCTCGGTGGGGATGTTGAATTGTATTGTAAAGTACAAAAACagacttattttttattatgaagtggagaaaaagacaaaaaaaagaaaaaaacacaagagttGACTTTTTCCTTACATCTACTTCTTTTTGTTGGTCATGATGACTCCCATAGTGTGTCACACTGTCTCTTCCCTGGAGGACTGACCGGTCACTGACGGCTGACTGCTTCCTGTAGACTTCCTGCTTCCTGTCTGTGAGTTATGTGTTTTAGGAGTAACCTTAACTGGTAGTACCACAGACTCACCACTAGGAGGAGCTGCATTAAGGCACGGGAGATGGCGGGCAGTGATAACCCCTACAACACAAGAAACCACCACTGTATCTCCCTCGACAGACCGCCTGAACCCTCTGAGGTTGTGTGCACGATCCTACACACAGCTGCGCTCAAACTTGTGGTATTTTTTACAGCTactgaacaacacacacacacacacacacacacacacacacacacaaatgctctCATCGGTAGAAGAGTTATACACAATACCTGCCAGATTGAATACAGTACTCTCTGTATATCTACCCCCAGTCATGAATGACAAGTATTTATTGTATCATAAATACCTGTACTTATTCAGTAGATCCCCTATGTATCAATCTGATtcttttaatatatattaatttatatttgtccttatttttgtattaaaaagATAATCTGTCAAGATAGCTGAACTAACAAAATGGTGTCCTTTATTTTGGTTGAAGAGAAGTTGTTTTTTTGATCACTGAAACTATTGTGCTTGCCAGAGACCTTAGTTACATTTTAATCTGCAAATGTGACGTGAAGACATTGTATATTTTTGTCGCGTTTCCTGAGAGTTTGTACTGTGCCATTACCAGAAGGTCTTTATATTAGAGTATAAATGTATAGATAATTTCCCTACCTATGTATTTCACACACAAATCTTGTGCGTAGCATTGACCCTAGAGGATGCTTAGAActgtttttacctttttaacaaatttaTGCTTAAagaatactgtgactttttctaAATGAAACTACTTTGTTAGCCCCTTGGTCTCTGATGTTAACATGTTGCTGCTAAGTTTTTGTACCGTAGACTTGGATCCTGATCTGTATGTTATATAGAACTTCCTGCTCCTACTGTACGGGGGCACCTTGTGTAACAGATAAATACGTCCCCCCACCTCTACACATGTGCATTGTGCTTTATATTCCCCTCTTCTCcatccccagactaatgtcAGTTCCCTGACTGatgtttgtttattaaacacAATATTTACCTCACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10814 lncRNA downstream 3215 26682971 ~ 26690130 (-) True G7969
TU10776 lncRNA downstream 55505 26629781 ~ 26637840 (-) True G7948
TU10748 lncRNA downstream 141439 26550712 ~ 26551906 (-) True G7936
XR_005640497.1 lncRNA downstream 157621 26533833 ~ 26535724 (-) False LOC120566984
TU10905 lncRNA upstream 80939 26861187 ~ 26865281 (-) True G8023
TU10906 lncRNA upstream 87177 26867425 ~ 26873605 (-) True G8024
TU10911 lncRNA upstream 116169 26896417 ~ 26914727 (-) True G8027
XR_005640036.1 lncRNA upstream 144918 26925166 ~ 26925792 (-) True LOC120563938
TU10922 lncRNA upstream 180175 26960423 ~ 26960916 (-) True G8037
XM_039794582.1 mRNA downstream 73321 26586509 ~ 26620024 (-) True pds5a
XM_039794591.1 mRNA downstream 73324 26586509 ~ 26620021 (-) False pds5a
XM_039794562.1 mRNA downstream 73599 26587619 ~ 26619746 (-) False pds5a
XM_039794572.1 mRNA downstream 73995 26587619 ~ 26619350 (-) False pds5a
XM_039794527.1 mRNA downstream 114530 26569675 ~ 26578815 (-) False smim14
XM_039816225.1 mRNA upstream 94465 26874713 ~ 26889605 (-) False ncapg
XM_039816240.1 mRNA upstream 94465 26874713 ~ 26889592 (-) False ncapg
XM_039816230.1 mRNA upstream 94465 26874713 ~ 26889509 (-) True ncapg
XM_039808394.1 mRNA upstream 136134 26916382 ~ 26931485 (-) True haspin
XM_039807040.1 mRNA upstream 215913 26996161 ~ 27012421 (-) True LOC120563023
TU10756 other downstream 114540 26567067 ~ 26578805 (-) True smim14
TU10758 other downstream 114540 26567614 ~ 26578805 (-) False smim14
TU10760 other downstream 114540 26567614 ~ 26578805 (-) False smim14
TU10761 other downstream 114540 26567614 ~ 26578805 (-) False smim14
TU10744 other downstream 157609 26533852 ~ 26535736 (-) False LOC120566984
TU11635 other upstream 2525773 29306021 ~ 29339824 (-) False rnf24
TU11633 other upstream 2525800 29306048 ~ 29339824 (-) True rnf24
TU11778 other upstream 2809060 29589308 ~ 29593623 (-) True G8701
TU12128 other upstream 4191140 30971388 ~ 30974612 (-) True G8975
TU12451 other upstream 5159473 31939721 ~ 31948554 (-) False znf827