RNA id: XM_039796778.1


Basic Information

Item Value
RNA id XM_039796778.1
length 3825
RNA type mRNA
GC content 0.55
exon number 13
gene id LOC120556912
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 48611279 ~ 48704119 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACGCAATAATAGATTAATTATAAGGCTACTTTAGCCAGTTTTAGCTAAACTAACTTTAACGTCAGCTAGTTTTAGCTAAACTAACTTTAGCTAGTTTTAGTTAGTGATTCCACCGAGGATCTATATTTTTCTATGTGGCAACTCTGTAATAATAGGGCATTAATATCATAGTTAGCCTAATTGCTTATGAACAGTGACAACACAAAAATGCTAATGAAAAACTTCTAGTGTCGTCATTTGACGTTAATGACAAAATGAAAAGTCAAGGTAAACATAGCCTAGTCATTACCATTATAGCCTACCTCCTCAGCCAATCAGGCAGAGGCGTCATATTACCGCTGCTCTCCTCCTCTGGGTCTGTCACAGCTCGGTGCTGCTGAGACCCAGTCccggtctctctgtctcttaaaATCTGTCCCTATCTCTGTCcgacattaaaccatgttaccGACCGAGTCCGGGGACAGTGAGGTTCCTCGGTGCTGTCCCTCGAAAACCAAACAAAACGACGCAACAGAGCGGCCATGACGTTTCCCCGCGGAGCATAAGCAGACTACAACACCGATTTACTGTAGGCTACTAAAAAGGAAACGACTTTAAGAGCCCTGGACCCTGCAGATGCTGTCCCAGacgttgacacacacacacacccagacgtAAGAGTTACCCAGTCCTgtggacaggaagacaacatgGCCTCCGGCTCCCCGCCCAGGAATCCTCCCAGCGGCCTCACAGACAGGAGCGGTAGCTTCTTTAAGCTGATTGACACATTTGCGTTGGAGATCGGGGAGCTGAAGAGAGAGATGGTCCAGACCTCTTCAACAGTCGACAAAGAGCCCATGGATCTACAAGGGCTGGACAGCGAAGTGAGTGGCGTTTACCTGCAGTCCCCCCACTGTggcggggtggggggggaaagGGATTCTGGATACGACTCCTTGCGAAGGAGGATGAGCGTGTTGGACAGGCTGACTCAAACTCACCCGGTGTGGCTGCTGCTGGCAGTCAGTGAAGAGGAGGCCTGTCGCATACTGCTCAAACAGCCTGCCGGGGTGTTCCTGGTCAGGAAGTCAGGCGCTCTGCAGAGAAAggttctgtgtgtgcgtctgaaGGAGGATCAGTCAGGAACTCCCATCAGCCACTTCCCTGTCAGAGAGAGCCAGTACACCTTTTCTCTTGAGGAATCTGGGATCAGCTTTGCAGATCTGTTTCGCCTGGTGGCTTTCTACTGTATTAGCAGGGATGTCCTGCCTTTCACACTCAAACTCCCAGAGGCCATTGCATCTGCTAAGACTCAGAAAGAACTGGAAGAGGTGGCTCAGCTTGGAGCAGGCTTCTGGGACTCTTCCCTTTGTAGCCAGCGTCGCACTTCCCCCCGTCCCTGTCGCCCTCTGAGCCGTACCCTCAGCCCCCAGCGAACTAACAGGAACAGGAAGGCCGAGGGCTCAGAGCAGAGACACCCCGGGGCTCACTGCGACAGCGCACCTCCGACTCTGCGGTCCCGCTCTCCTCCGGCTTCCTTCCATCAGGAGAGAAGACATTCCGGGGGTCGTCTGTGCTTCGTCAACCCCCTGTTCCTCCAGACTCATCACCACCACTGCCGCTGTGAGGGCCACCCGCCGTCTCGTAACAACCTAGAGAATGCCGGGAAATCGTCTGTGACGCCGTTAAACAGCAGCCAAGGTAGCGAGCAGCACGCGGACAAGATCAAACTGAACAGCAAATCACGGCCCCCTCCCCCTCGCCCTCCTCCCCCCCGCTCAATGCCGCGCCGGCGCCCTGCCCCACCTCCGCCTGGACCTCCAGCCGCTACCACCAGACCCAAGAGCATGCCAGAGGCCGCTGCTGTGTCTGCAAGGCAACAACAGCAGTCCCCCAGCAGGCGCCCAGCACCCGCTCGACCACCAATGGGTGCCAAGCATAGCAGCCCGTCCAAAACTACCAGCTCCCCAATCCCTGTGCCTTCGAACCCGCCACCTCCAAGGCCTAAGAAGCCTGATCTTGAAGCTCACCGTTGCCACATTGCCCTGGACGACGAGACCATCGCCAAGGCTCTGTCCCGGGCCAAGCTTCCACCATGCCAGCCCCCGCCTGCTGTCCCCGCTGAAGCACTACTGGAGAATAACGCTGGGAGTCCGTCCACCCCCAAGGAGAGGGGACGCCAGCGGCTCAGTGACATGAGCATGTCTACCTCGTCCTCTGACTCATTGGAATATTCCCAGTCTCCTGGATTCTCCCTGGGCCCGGCCCCGAGCCCGTCCCGACACCTTAATCATCAGAACACAGTGGAGGACAGCAGCGAAGACGATGAGGACGGGGAAGAAGATGAGGACGAAGACTACGGCGTAGGTTTGGAGACGGACCTAGAAATGCGCCTTCGCCCGTCCTTAAAAGCGCGACGGCGAAGGGTCGGCGTGAGCCTCGGCGGCGGCTCTTTCATCCTCCCCAGGGCCCTGAAGGGACGCTTCCGCAAGATGAGCGGCATGCTCAGCTCCTTCATGACGCCGGAGAGACGGGCGGTGAAAAGGATCGCTGAGCTGTCCAGGGACAAAAGCTCATATTTTGGCTCCCTGGTGCAGGACTACATCAGCTTTGTTCAGGAGAACCGAGGCTGTCACACGTCAGGGATGGATTTTCTGCAGACTCTCAGGCAGTTTATGACACAGATGAAGGCGTACCTGCGCCAGAGCTCCGAACTGGACCCGCCTTTAGAGTCACTCATACCTGAGGACCAAATCGACCAGGTGCTAGAGAAGGCCATGCACAAGTGTGTCCTGAAGCCTCTGAAGAGTGTGATCGAGGTGGCTTTACATGACTTCCAGGTGAGCAGCGGAGCTCTGCAGCAGCTGAGAGAGAACCTGGCCCTGGCTAAGACCAAGAGGCCCCAGGAGTTAGGGGTGGACGGAGCTGTGCCTCCTGACCCCATGGCTATAGAGAAGATCCGCCACAAGTTCCTAAACATGAGGAAGATGTACTCCCCTGAGAAAAAGGTGTCATTGCTGCTGCGTGTGTGTAAACTCATCTACACCATCATGCAGGATAACTCAGGGAGGATGTACGGTGCCGATGACTTCCTGCCCATGCTGACTTATGTGGTGGCTCAGTGTGACATGCCTCAGCTGGACACAGACATCCAGTACATGATGGAGCTGCTGGACCCATCTCTGCTGCAAGGAGAGGGGGGCTACTACCTGACCAGCGCGTACGGAGCCATGTCCCTCATCAGGAACTTCCAGGAGGAGCAGGCGGCCCGGGTCCTGAGCTCTGAGGCCAGGAACACTCTGCACCAGTGGCACCGAAGGCGCACCGCCCAGCGCACGGCGCCGACTGTGGACGACTTTCAGAACTATCTCCGCGTAGCCCTGCAGGAAGTGGACACAGGCTGCACGGCCAAAACCCTGATCGTCCACCCTTACACAACCACAGAGGAGGTCTGCTCACTCTGCGCTTACAAGTTCAAGATCCCAGACCCCGACACCTACGCACTGTTTCTGGTCACTGGGGACACCCGGCAGCAGCTCGCCCCGGACACGCACCCTCAACGGATCAAAGCCGAGCTCCACAGCCGGCCCCGTGCACAGATCTTCCACTTTGTCTTCAGGAAggtacctaaccttaacctctgTATCCCTGCCCTCATGAACAATGGAAACTGCCTTCAAGTTGAATAGTACAGGAGAACGTGACAGCTTGCTGCACTCGATCCTAAACAATAGCCATGTTTCGTGGTAATCTGTTGATGCTTGTTTCTTAGAAAACATTTGATACTGTCTGAacggaaacaaaaaaaaacaagctgtaTGTTGATGCAGATGTAAAATG

Function

GO: NA

KEGG:

id description
K23687 RIN2_3; Ras and Rab interactor 2/3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17194 lncRNA upstream 10623 48598671 ~ 48601646 (+) True G12932
XR_005636493.1 lncRNA upstream 235116 48373491 ~ 48377153 (+) True LOC120544367
TU17084 lncRNA upstream 272753 48339192 ~ 48339516 (+) True G12850
TU17083 lncRNA upstream 273162 48338865 ~ 48339107 (+) True G12849
TU17080 lncRNA upstream 277532 48334225 ~ 48334737 (+) True G12846
XM_039810075.1 mRNA upstream 2990 48497465 ~ 48609279 (+) True LOC120564817
XM_039776668.1 mRNA upstream 291412 48214308 ~ 48320857 (+) True neurl1aa
XM_039776742.1 mRNA upstream 315521 48214304 ~ 48296748 (+) False neurl1aa
XM_039776844.1 mRNA upstream 409515 48200870 ~ 48202754 (+) True LOC120543662
XM_039808795.1 mRNA upstream 1491635 46846017 ~ 47120634 (+) False LOC120564084
XM_039796809.1 mRNA downstream 10358 48714477 ~ 48721252 (+) True LOC120556923
TU17110 other upstream 124050 48428853 ~ 48488219 (+) False G12872
TU17111 other upstream 124375 48428800 ~ 48487894 (+) True G12872
TU17112 other upstream 125776 48485248 ~ 48486493 (+) False G12873
TU17113 other upstream 125776 48485248 ~ 48486493 (+) True G12873
XR_005640059.1 other upstream 1486782 46846017 ~ 47125487 (+) False LOC120564084

Expression Profile