RNA id: XM_039797387.1


Basic Information

Item Value
RNA id XM_039797387.1
length 428
RNA type mRNA
GC content 0.50
exon number 3
gene id LOC120557242
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 23711827 ~ 23720750 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTCTTGTGTCACATGTGCACAGCCCGAGGGATTTCCAGTGGTGTTTTTGTGGTTCACGTCGGGCTAAAACACCCGGTAATTAGAAGAATAAAGCAAAAAAGAGATGGATAGAGACTTTTTTCCTGAGCCGGGACGTCTGTTGACATTTGTGAGGACACTCAAAGAGGTGTTTGACGTGTGTGACGAAGACTCAGACGGGTTTATCCGCCCTGAACACTTTGTGCAGTTGGGTTCCCAGTTTGGACAAGCAGAACAGGTGAAGAAGTTGGCCCAATGTCTAGACCCCGACACTTTTGGGAGGATCAACTTCAAAATCTTCTGCCGTGGCGTCCTCACCATGAAAGACTAAGAGTCTCTGTAAAAGCAGGTCAGCTTTCCCACTACAGTGGACCCAGGCCAACCAGGACACAGGAAAGGACAGAGCCGGG

Function

GO:

id name namespace
GO:0051726 regulation of cell cycle biological_process
GO:0000910 cytokinesis biological_process
GO:0048592 eye morphogenesis biological_process
GO:0030139 endocytic vesicle cellular_component
GO:0055038 recycling endosome membrane cellular_component
GO:0030496 midbody cellular_component
GO:0032154 cleavage furrow cellular_component
GO:0042803 protein homodimerization activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU9631 lncRNA downstream 128625 23584200 ~ 23584522 (-) True G7069
TU9629 lncRNA downstream 136018 23576928 ~ 23577129 (-) True G7067
XR_005638749.1 lncRNA downstream 142115 23567560 ~ 23571032 (-) False LOC120555765
TU9645 lncRNA upstream 13614 23734364 ~ 23739835 (-) False si:ch211-207j7.2
TU9681 lncRNA upstream 161999 23882749 ~ 23885720 (-) False LOC120562828
XR_005638830.1 lncRNA upstream 216659 23937409 ~ 23943368 (-) True LOC120556236
TU9751 lncRNA upstream 219223 23939973 ~ 23943573 (-) False LOC120556236
TU9760 lncRNA upstream 294709 24015459 ~ 24055760 (-) False G7141
XM_039797373.1 mRNA downstream 27708 23657337 ~ 23685439 (-) False rab11fip4b
XM_039797366.1 mRNA downstream 27708 23657337 ~ 23685439 (-) True rab11fip4b
XM_039794846.1 mRNA downstream 56891 23650623 ~ 23656256 (-) False LOC120555782
XM_039794864.1 mRNA downstream 57197 23650623 ~ 23655950 (-) False LOC120555782
XM_039794855.1 mRNA downstream 57358 23650623 ~ 23655789 (-) True LOC120555782
XM_039804326.1 mRNA upstream 15288 23736038 ~ 23746031 (-) False si:ch211-207j7.2
XM_039804317.1 mRNA upstream 15288 23736038 ~ 23746031 (-) True si:ch211-207j7.2
XM_039794043.1 mRNA upstream 52106 23772856 ~ 23811021 (-) True palm3
XM_039806733.1 mRNA upstream 161995 23882745 ~ 23885762 (-) True LOC120562828
XM_039795744.1 mRNA upstream 346178 24066928 ~ 24068828 (-) True LOC120556266
TU9627 other downstream 140098 23572705 ~ 23573049 (-) True G7065
TU9432 other downstream 470857 23213856 ~ 23242290 (-) True G6943
TU9396 other downstream 548210 23088500 ~ 23164937 (-) True G6924
TU9329 other downstream 724647 22981925 ~ 22988500 (-) True G6881
XR_005640901.1 other downstream 1673996 22039009 ~ 22039151 (-) True LOC120569580
TU9637 other upstream 31276 23752026 ~ 23768841 (-) True G7071
TU9657 other upstream 53975 23774725 ~ 23810964 (-) False palm3
TU9658 other upstream 53975 23774725 ~ 23780324 (-) False palm3
TU9991 other upstream 811486 24532236 ~ 24535316 (-) True G7323
TU10046 other upstream 1035182 24755932 ~ 24759600 (-) True LOC120543531

Expression Profile