RNA id: XM_039797666.1


Basic Information

Item Value
RNA id XM_039797666.1
length 3492
RNA type mRNA
GC content 0.51
exon number 20
gene id sh2d3a
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 14856366 ~ 14876182 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTCCTGCACTGTGATTTGCtgttgtctgtgtctgcattCCGTGTGCCCACTGCACGATCTGATTGGCTTTTTGAGAGACCCTACAGGTTTGAGGGGGAGCGGGCTTCCACTGTTACCACAtagagaaagtgagagacagACTTAATGACAGAGGTTACAACCTAGATGAGAGCAGCTGcaaagaaggaaggaaaacGGAGGGAAagtaagaaaagaaagaggcaTTATGAGATAGAAATATtacaaggagaaagagagaagtaaTCTCCCAGAGTGCCTTGGTGGACCCATACAAACAGACATGAATAATCGCTCCATTGCCTGGTGGCTGAGACAGATCGGCCTGCCCCAGTACACCAAGACACTAGAAAGGGAATATTATGGTCTGGAGGGTTTGCTATGTGTAACAGATGGAGAGCTGAAGGATTCAGGGATAGAGGatgcaacacacagagaaaccaTCCTCAATCAACTTTCAAGACACAGGCAGAGACTCGACCAACACTCTGtatcATATTTAACAGAGAGACCTAAAAGTGGTGTGCAAGTGGAGCGCAGGGTGAGCCGAAAGTACTCCCTGGGATCGTCTATGGATCTGGTAAAGCCGAGGAAGGATCTGTTTCGTCAGAGTGTCCTGCCCCGCCTCCAGCGAGCTGATAAAAAAAAccgtctctctgcctcctgctCGCAGCTCCGCCCCCTGAACGAGGACAACACTATCAGTGAGGCGGAGCGCGGTCAGGACAGCAAACGCAGCAAGAGGAGGAGTGTCAGCGCATACTTCAGCCAGCTGAAGGTGTTTGGCGGTCGGAGAGACATGGACTTAATAAAaaaggagctggaggaggagctgaAGCTCAGTACTGACGACCCGACAAGCCATGCATGGTACCACGGGCCGCTGAGCCGAGAGGCTGCAGAGTCTCTGTTTGAGAGGGATGGAGACTTTCTGGTCCGAGACTCAAGCTCTGCCACTGGCGACTACGTCTTGAGCTGCTTTTGGAAGGATGCGCCCATGCATTTTAAGATCATACAAGTCATCCTTCGACCCAAAAAGggctactcaaagaagctgTTCCAGTTTGAGGAGGATCGCTTTGACAATGTTCCCGCTCTTATCCGATTCTATGTGGGCGGGCGTCGGCCCATCTCCCAGGCCTCAGGTGCTGTGATCTTTCATCCAATCACACGGACCCTTCCTCTGCGTGTCATCAGCGAGCGTCAGGCAGAGCccacaagcagcagcagcagcagcagcagcagtagtagagGTGCAGGGAGAGAAAAACACACTGAAGCCAACATAAGGCGCAGCTTCAGCTCTGGACACACCGACACACTGCAGGTCAATCAACTGCTAAGGAGTGGAAGTCAACCTGCTAACTTGGAGAACGTTGGATGCAGGCCTTCGCTTCAGTCTGCACAATCTGACAGCAACCTACGACCTGGTGTTCCACAAAACTCTCAGTCGGCGGACCCTGGCCCAGCCCCCATCTCCCCAGTGTTTCGTACAGGCAGCGAACCCCTGCTGAGCCCCCGACCACGACACACACGCCCCTCCTATCCAGGTGGTGGTGTAACTTTGCGAGGTTCAGATGGACAGCTGCACCCGAGAGCTCCTCCTAAACCTCTCAGGGTCTCTGCATTTTTCGGCAATGccatcccccccccacccacagaCCAGGACGGTGACCCCTCCTCTTTCTACGATGAGCTGGTCATCCGGGTGCCACAGTCCCAACAGAAAGGTCATGTGGACCGACTGCGTGCAGAGGAGAAGTGGCAGAGCCGCGCCCGCCTCACGGAGACTTCTTTTGGCTTTCTGGAGGCAGAGAAGAGAGAAGCATTATCACAGCTGTCGCTGCTGACGCCGGAGAGGATGTCAGTGGAAGTGGAAGACTGGCATTTTGAAAAGCCACATGTGGAGTCTGTTTCGTGTTTCCAATTGGATCAGTTTGAGTCGCTGCTCCTGCCGAAGAACAACCGACCTCTAGAGCCCACCGTCCTGCTGACACTCAAAGAGCTCTTCAACCGCTCAAACCCTGACACCACCGCTCTGCACATGCTCAGCGTTGACTGCCAGGTAGCACGCATCGTTGGCGTGACTGATGAGCAGAAGACGATTATGGGAGTTGGATCAGGGCTGGAGCTTATCACTTTGCCACACGGTCGCCAGTTACGACAGGATTTGTTAGAAAGGCATCATCTAATAGCACTGGGAGTCGCAGTGGACATCCTGGGCTGCACAGGGACTCTGAGCCAGAGGGCAACTGTTTTACATAAATTAATCTTATTGGCTCAGGCCCTTAAAGAACACGCCCACAACCTCTACTCCTTCTCAGCCGTGATGAAGGCTCTGGAGATGCCTCAGATAACGCGACTGGAGATGACGTGGCGAGCGCTGAGGAGAAACAACACAGAGTCTGCTGTTTTATTTGAGAAGAAACTCAAACCCTTCATGAAATTGCTAAACGAGGGAAACGACTCTGTAGTCCAAGGTCCCATAGCTGTGCCACACCTGGTTCCTCTGCTGATGGTGATGGAGGGTGACGACCCGGTGGAGAACAGCGAGCGAGGCTGTCAGCTCCTCTACGATGTCCTCCAATCAGCTCGCAGTGCCGCGCTGCATGCACATGATTATCAgcagcacgcacacactctGCTCACAGGAAACTGGGAGCCAGTCCCGGAGCTGCTGGAGGCTTTCCGGACTGAGTTTGCCCTGCGGCTGTTCTGGGGTCAGTCGGGGGCAGGGGCTGACAGAAAGGAGCGCTATGAGAAGTTTGACAAGATTCTTTGTGTCCTCTCAGATAAACTGGAACCCGCGGTGATCACCCCACAACAACCTGACCCTCTAACCTGAGCCCCAGGGTCTGTTTCACTAAGTGAGAGGTGCAATCAGCAGCTTTCTTCTCAAGAGGAATAAAAGATGAAAGTGAAATGTTTTTAGTCGAGCCTCGGCGTACTGCGTTAGCCAAGgctgaaaaaggaaaagatcACTTTCAAGCTTGTCAAGCGACAACTTAACTTATGAAATAAATCATATCATGAATGTGTAAAACCATGGGTAGTCCTTTACTGTGGAAAGGACCATTATTAGATAGGActgctgaagacaggaaaggggagagagagagcctgGGCCACTgcgtctggcgcttagcaccgcccaagatgattgtgattggtttaaaaaaaatgccaataaaccagagcacgtttttctcccatcccggaatgctatgtggacaagccagaccctcctccacagcactgtgaaggaaggtctggtaatGTGAGACTACTTTTTTATTAATCCACACCACTTGTTTGATACCTAAGATTCCTAAGGATCAACATAAACATTATTAAAACTGAGTCAGTTCCTTTTGTACACCACTTGCTGCTGCAAGAGACCACACTGGagatgtatgtgtttattttttgcatttaatATTTCTCATAAATGATACTGTAAAGAAACAAAAGaca

Function

GO: NA

KEGG:

id description
K23688 BCAR3, SH2D3B; breast cancer anti-estrogen resistance protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6214 lncRNA downstream 3533 14850961 ~ 14852833 (-) True G4566
TU6065 lncRNA downstream 416703 14439456 ~ 14439663 (-) True G4450
TU6056 lncRNA downstream 558914 14297089 ~ 14297452 (-) True G4443
XR_005639156.1 lncRNA downstream 747673 14105951 ~ 14108693 (-) True LOC120558606
XR_005639155.1 lncRNA downstream 777367 14078317 ~ 14078999 (-) True LOC120558586
TU6324 lncRNA upstream 95407 14969481 ~ 14970706 (-) True G4658
TU6326 lncRNA upstream 97306 14971380 ~ 14973191 (-) True G4659
TU6335 lncRNA upstream 125067 14999141 ~ 14999689 (-) True G4663
TU6343 lncRNA upstream 138851 15012925 ~ 15013189 (-) True G4670
TU6342 lncRNA upstream 154412 15028486 ~ 15029138 (-) True G4669
XM_039805767.1 mRNA downstream 31470 14811342 ~ 14824896 (-) True LOC120562191
XM_039805776.1 mRNA downstream 31921 14811342 ~ 14824445 (-) False LOC120562191
XM_039814487.1 mRNA downstream 49050 14805750 ~ 14807316 (-) True LOC120567499
XM_039795148.1 mRNA downstream 137713 14712144 ~ 14718653 (-) False LOC120555938
XM_039795121.1 mRNA downstream 145398 14702708 ~ 14710968 (-) False palb2
XM_039804816.1 mRNA upstream 27072 14901146 ~ 14904229 (-) True ubl5
XM_039803813.1 mRNA upstream 166773 15040847 ~ 15052712 (-) True smcr8b
XM_039795789.1 mRNA upstream 180377 15054451 ~ 15061452 (-) True mief2
XM_039795780.1 mRNA upstream 181275 15055349 ~ 15063940 (-) False mief2
XM_039795798.1 mRNA upstream 191574 15065648 ~ 15070738 (-) True alkbh5
TU6167 other downstream 137264 14712203 ~ 14719102 (-) True LOC120555938
TU5715 other downstream 1289100 13531753 ~ 13567266 (-) True G4168
TU5471 other downstream 1816132 13037280 ~ 13040234 (-) False LOC120560438
TU6236 other upstream 27076 14901150 ~ 14904209 (-) False ubl5
TU6504 other upstream 552470 15426544 ~ 15429556 (-) False sdk1a
TU6856 other upstream 1471696 16345770 ~ 16347922 (-) True LOC120558720
TU7590 other upstream 2836572 17710646 ~ 17713898 (-) True LOC120560175
TU7616 other upstream 2956618 17830692 ~ 17835761 (-) False epn3b

Expression Profile