RNA id: XM_039798599.1


Basic Information

Item Value
RNA id XM_039798599.1
length 2416
RNA type mRNA
GC content 0.52
exon number 16
gene id fip1l1b
representative False

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 24837553 ~ 24851233 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CACCTTAGCGGGATGTCAACAATTTCTTCCGGGTTCACACACTCACTCGCAGAGGTTGAAGATGAATCTAATGAAGGCATAATTTTGTACATAACTGCGTTTCCCCGGTGAAATTGTACGTGTATTTCTGCATTCAGAAGGTTTGTTATACGTTATTTCTGTGACGCTGCTGTTGGTTTAGCTAGTAGCTCCGTGTTAGCTGAACATGTCTGCGGAGGAAGCGGACAAAACAACCACCACTGACGCCAGCGctggagatgaggaggaggaatggTTATATGgagATGAGTCTGAGAGCAAAGATGAGGACGAAGAAGGCAAACTGAATGCTGCAGTCAGTGCACCTGCTGATGCTTCAACAGAGGATGATGCTGCTGCACACGCTACAGGAAATGGAGTGGCCTCCGAGGCGACAGGTGAAGCTGCAGGTGAGGACGTTGACAGTGACAGcgacagtgatgatgatgatgatgatgtccgCGTCACCATTGGAGACATTAAAACTGGAGCACCACAGTACACAACTTATGGAGCTCCACCTGTCAATCTCAACATAAAGACGACAGGCTCCAGACCTTATGGACAagcCTCCAAGATGAAGGGAGTGGATCTGGATGCTCCTGGAAACATTAACGGGGTTCCAGTGCTGGAGGCAGACATGGAGTCCTTTGAGGAGAAACCCTGGAGGAAgccaggagcGGATCTGTCAGACTACTTTAACTACGGCTTCAATGAAGACACATGGAAGGCTTACTGTGAAAAACAGAAGAGACTGCGGATGGGCCTGGAGGTCTCTACTGTCGGCTCGGTGACGAGCAAGATCACTGTTCAGCAAGGCAGGACAGGTAATGAGAAGGACATATCCACTTTGCCTGTTCACACCTCCAAGCCAGACTTCACATCTCCTGTCAGCATGTACAAGCCTGCTGTCAGTCAGGTCCCCAGaaatcgagactcatcagaccaggcaacatttttcccgtcttcaactgtccaattttgGAAGACGAGTGGTACTATAGACGTGATAGGTGGAGGGACGGCCACCATCAGCAGGGTCGAAGGTCGACGCAGACACAATCTAGAAGGCAACAATATCCAGGTGATCGCTGAACAATCAGACGCTGAGCCGACTCCAGCTAAGATTCCCACCTTCTTCCCTCCTGGACCACTTCCTCCAAACATACCCCCgcctcctttcctccctccacCACCCAATGTCAACACTGCACCCCCACTCATCCCCCCACCCAGGTTGCCCATTACTGTCCCTCCCCCTGGTTTTCCTCCTCCACCTAGCGGGCCCCCTCCTGCTATCATCCCCACAAtggacagTGGCCACCCTGGAGGTTATGATGGACGCTCTGTCCCTCCCTACCCTTTCCCTCAAGGTGCATACCCTCCACCCATGGCTGGAGGGGTGCCTCCTCCTTGGCCCCCCATGATGGACAACTCTAAACCCTGGGACTACTATTCCCGTCGAGATgacaagagagagaaggaaagagagaggcccagagagagagagaggacacatgaacgggagagagagagggaacacAGCCCTTCAGCTATGGGCTACACCAGTGAAGAGGAGCGGTATCGTTACCGCGAGTACCAGGAGCGTGGTTATGCAGAGCGACATCGTGAGCGGTCGAGccgagagaaagaagaaagacacagagagagacggcaccgagagaaagaggagggtcGCCACAAGTCCTCTCGCAGCAGTAGCAGGAGAAGGCACGACAGCGAGGAGGGCGACAGCCACCGGAGGCACAAACACAAGAAGAGCAAGAGGAGCAAGGAGGGCAAAGAGGCCAACGAAGAGATCAGCGCAGACCAAGAGAACCAGGAGGCCATGGAGTAGTGATCACCACCTCCtgtttttcctttctctgtctgtctccggTCCTGTCTGTCCCTCCGTGTCCGTGTCCCACCAAGatgagaaagaaggaaagggaaaagatGAGCACAGACCAACACAACCATGATGTCGCAGAGTGATCAATGCGTCCTGTCACTCCCCTCTCCATCAATCTCAATCCTCCTCCATCCTGCTGTCGTTCATCCTCACCATCACTTCAGGCAGAGAATGGATGGAGCAGAGGAGGTGGTAAAGGAGGGATGGTCGTCCTTTTTACTTTATCTGTCTTTCCATCACTAGCTGACATCAGACAGGACATCAATCTGTCTTCATCCCCCTCCTGCTCTCCTCTGCTCCTCATCCCTCCTCTCAGAGCACTGTTGTAACAATAAGGTCATGCTCGGAGATTTCACTGTATAGTCATGACGATCTGCAGATTTAgctcttttttttgtcatttgtttgtttgttcttgTCTCGTATGAAGACATCTATAGACAGCTGTCGGTTTAAGTTCAATTAAAAACCCTTTTGATAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10067 lncRNA downstream 25469 24811462 ~ 24812084 (-) True G7388
TU10061 lncRNA downstream 73863 24761914 ~ 24763690 (-) True G7383
TU10020 lncRNA downstream 168256 24665385 ~ 24669297 (-) False si:ch211-243a20.3
TU10027 lncRNA downstream 185332 24651943 ~ 24652221 (-) True G7352
TU10026 lncRNA downstream 194450 24642823 ~ 24643103 (-) True G7351
TU10211 lncRNA upstream 402073 25253306 ~ 25254219 (-) True G7506
TU10271 lncRNA upstream 624210 25475443 ~ 25512353 (-) True G7551
XR_005640729.1 lncRNA upstream 673622 25524855 ~ 25525679 (-) True LOC120568431
XR_005640720.1 lncRNA upstream 694902 25546135 ~ 25549752 (-) True LOC120568384
TU10300 lncRNA upstream 747465 25598698 ~ 25599084 (-) True G7577
XM_039798618.1 mRNA downstream 974 24832161 ~ 24836579 (-) True LOC120557916
XM_039797579.1 mRNA downstream 8777 24826409 ~ 24828776 (-) True LOC120557339
XM_039797529.1 mRNA downstream 18807 24817033 ~ 24818746 (-) True rhbdd2
XM_039815613.1 mRNA downstream 31866 24789998 ~ 24805687 (-) False slc34a2a
XM_039816371.1 mRNA downstream 31866 24789998 ~ 24805687 (-) True slc34a2a
XM_039802565.1 mRNA upstream 30865 24882098 ~ 24914058 (-) False clockb
XM_039802547.1 mRNA upstream 30865 24882098 ~ 24914058 (-) False clockb
XM_039802538.1 mRNA upstream 30865 24882098 ~ 24914058 (-) True clockb
XM_039802530.1 mRNA upstream 33882 24885115 ~ 24914058 (-) False clockb
XM_039802556.1 mRNA upstream 33882 24885115 ~ 24914058 (-) False clockb
TU10046 other downstream 77953 24755932 ~ 24759600 (-) True LOC120543531
TU9991 other downstream 302237 24532236 ~ 24535316 (-) True G7323
TU9657 other downstream 1026589 23774725 ~ 23810964 (-) False palm3
TU9658 other downstream 1057229 23774725 ~ 23780324 (-) False palm3
TU9637 other downstream 1068712 23752026 ~ 23768841 (-) True G7071
TU10312 other upstream 847028 25698261 ~ 25699557 (-) True G7589
TU10328 other upstream 932711 25783944 ~ 25788229 (-) True G7603
TU10486 other upstream 1150291 26001524 ~ 26003263 (-) True G7722
TU10488 other upstream 1150291 26001524 ~ 26009217 (-) False G7722
TU10489 other upstream 1150291 26001524 ~ 26009217 (-) False G7722

Expression Profile