RNA id: XM_039799369.1


Basic Information

Item Value
RNA id XM_039799369.1
length 6066
RNA type mRNA
GC content 0.45
exon number 7
gene id LOC120558389
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 13428440 ~ 13474559 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tctctcgctctctccgaGACAGCCTCGTCCCTCCTCACCGCCGGTGGAAGCTCAGTTGACCAGCGTCGCAACTGGGCGATGCGCCTTCAAGCAGAGACTCTACCTTTTTGCGGCGGATTTGACAGTCCCATCGCAGCTTGCATCCTCACATCCTAATGAGTAATAATTTAGTTGTTTGCCCTCGTCAGTGATTTCCTCAGCTTGCGTCAGTCTAAttttgaggggggaaaaaaaaactattcacaGGACAAGGTTTTCGGTTATCTGAAAACTGACCGCTCGCAACAGGTTTTTTCCACCGTCTTGAACGATCCCTGTGGGAGGATTTGCTGTCAACATAccgattgctttttatttttgaaaccaGCCAGAGACAACTGATAACTTAATCGAAGATGGTACGAGAAACCCCGGACAAACTCGCTTGATTTTGGTCATTTGTGTCCTCAGTTTTTGTCTATTGGAGGCTCGAAAGCATCTTCAGACAGACTACAGGGAGCAGAGGCGGCTGTTTCACCGTCCACAGGCTGTTGTAAGGTGGGCAGGAGCAACCAGCAGCCATGCTGTCATTGGACGAGCCGCTGGACTTGAAGCTTCCCAAGGGACGGACAGATGGTCCAGTCAAATTAGGAAAGAGGGCTTGTTCTTCCTCTATCTGTGCCCCTCTCAGCACCACACGACCACGCCTGCTATGCACAACCTTTCcgtctcccccctcctccccagAGTCCCAGTCTTCCCCTCAAGAACGACCCGGGTCCTGCTTCAGTCCTCCAGCCATGGACCTCAGCCTGTCTCCCTCCTCCCGCCatgcctcctccctctccccgtctccttcctccccctcctcccccttccCTTCCTCACCCCTGGAATCCCCTCACTGCAGCAGCAGCCCTCAGCCACATCTCTTCTCACGGGAACCAGCTCGTCATCGAGGTCTGGAGGGTAGAGCTTCACCGCAGGGCTATCCATTTTACCTGCCGATTGGAAGCCCACCGAGGGCATACAGCTTTCCCTCCTCCATGTTCATCGCTCAGAACAGAGAGAAGCAGGTATCACCAGAGCCCTCATTGGACGGTCAGCTGGCCTGCCGTTGGATAAAGTGCCACCTGCTGTTCGACTCGCTGCAGGACCTGGTTGATCACATCAACGACTTCCACGTCAAGCCTGAAAAGGATTCTGGGTACTGCTGCCAGTGGGAGGGCTGTGCCCGTAATGGCAGGGGCTTCAATGCCAGGTATAAAATGCTGATTCATATCCGGACACACACCAATGAGAAGCCGCACCATTGTCCCACCTGTAACAAGAGCTTCTCACGTCTGGAGAACTTGAAGATACACACCCGTTCACACACAGgAGAAAAACCCTACATCTGCCCTTATGAAGGCTGCAGCAAACGTTACTCCAACTCTAGCGATCGCTTCAAACACACCCGCACCCACTACGTTGACAAGCCTTACTACTGCAAGATGGCAGGCTGCCTGAAGCGCTACACAGATCCCAGCTCGCTACGCAAGCACATCAAGGCACATGGGCACTTTGTTGCCCATGAGCAAGGTGCCCCGAGCAGGCTGGGGGCGGGGCTGGGCCTCCCTGGTCACCAGAGTGCCGTTGAACTGCCTACTGTAGGCAGGGCCCACATCATCCTCCCTGGGGCTGCTGCAGCTCTTCTTGGGGGCCTGGGGACCTCTTTGCCTCTCTCTGCTTTCTGCCACGCCAGAGCCCTGGGCCACCATGGGGCACCACTCTTCTCCATGGGTGGAGGAAGCAGCATCGGGCCGCTCGGCCTCTCGGACTCTCCTCTCTTACACTTTGGACTTTCAGCTGCATCAATGTTGGGGCTGGGAGCTCTTGGAGGTCTGGGACGGGTGGTAGGGAAGGAGACGGAGggtgaagaggaagaggaggaaggagaggagggggaggtgcTGAACCTGTCTGCAGGAGTGGGGCATAGACGAAGTGACCCTTTGTCCTGGGTGGTTGTTCCACCAAGGGCAGGCCTCCTTAAACCAGCTGTCGTCAGCTAGGATGTGCACTCAGCAATGCATAGAACCAGGATGTGTGTCCATGTTTGCGTGTTCAGAACATACATGCATGATTATGATGAGTGTGTagagtgtgtagtgtgtgtgtgtgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtatgtgtatgtgtgcgcgcatgtgaGGGAACAAAGATCAATATCACCTGCAGAGCCATAAAAAGCACTTCAGCCATTCCAGCCGAGAAACAACTGAAGAAAGACTGAAATGGACAGAAGTCATTGTTTCGAGCGTACAAAGCCCAAACAAGACCTTAGAGTATTGGGTTGCAAAAGTCTTCCACTttaaaagggtcagttcacccaaatgaaaacgagaaaaagaaaatgtacccCTAGTGGTATCCGGCAAGGCCGACAGGTGCAGATAGAATATCCATTCATCACATTAAAGACATAACATAAAAGAACAATGAGGCTATTTGCTTGCCTAACATTTTCTCTGTGCTTCAATGAGTTTCAGAGATACTGGAGGTTTATTCCATTCAAAGGGATTGTTGCCCACTGAACTTTGAATCTAAAAAGGATCAAATTTGTTAAGCTGCCTTTTGTCGCATACCATAATTCCTCAACTAAAAACCGGggcctttatttacctgaaCTGTAAAAGTtcacaggcttttatttgaaGCAGGGCAACTTGAGTCAGAATTAATCAAACACCACCATTGTGTCAGTTTGAACCCTGTAACTGTACCgggtatttatttcaaatacaggtACTACGGTATTGTTGGTAGATTACAATAAGAGCATACAGTAGTTTAGTAAAACACATTGCTGGTTTGCAGCACGCCAGTATCTGATTAACGTTACAGACGGTAGCTAGCTTTGTTTTCAGCTGCAttgaaaaactttgaaaaacgtTAGCTCCAGGCTAACGTTTTTCCTCCCACCTCCAGATAGCCGTGCTCTGCTCTTGTCGGCTGATCTTGTAACTCCGtgtactttgttttgttttcaataagTTGTTGAAAAGTCCGTCACTAGCACTAAATGAGACCCCGTGTTACATCCAATGTTactactgccatctactggcacCTGTATGTTACCACAAACTACACTTACGCTCTGGTAACACATACAGCCGCATTGATTAAAATACCGGTAGGACAATAATACTTTACATGAGTATCATAAtccagagaaacaaagtgtggaaaaaaacatgaatatattGTTTAATCCGTTAAATTAAATTGCTAGAAATGTACATTACAAtgaacttgaattttatttttacttaataTTATATGAAAGGCACTTAGGAGATTATCCACACAAATctttgcctttattttgaccACGCCCCCCACGACCACTATCGGAGGACCGGCGTTTAATTGACTACcggtttttatttgaggaattacCCTAGTTGTCATTGTCGTGATTAGTCATTAAAAGTAGTTGGACAGATATTTAGGGACCTCATTaggaaaaactgaaaacagcataaacaaaaaaaggaaatttgaAAATTTCAACAGTAACCATCTTTTCAAAAGTCCCTGTTATTTTGGATAAACACAGGCATCGCCGTGAACACTttctttatttcaacatttttgcaaTGAGAGTTTCAAATGTCATTTATAGCCAGTACTAGGGTAAGCAAAGCCAGTTGGTCGGTCTACCTCTGTGGTACAGATGGAAACATTTCAACAACTGTTTGATGGATTGGCATGACATTTTttaccaacacattctcactcccatcgcgacAAAACGCGCAATTGGTCAGGTGCcattggcgtttgttattgatgcAAAAAGACTCCTTTAGCATCATATTCAGATGTGCTTGGTAGGGAcacttggcgtcactttttgacgctctgggtcgggacgtacgtttaactgacaagCAGctcaagaacgggacagttcgGTTTTGGTTAgggtcctgtgttgtttgacccatcctgcCTACTTACGCAGATTTTCGCTCTTTcctactactcgctaccgttgtcacTCTTACTCGGCCATCTTACAGTGCGCGGTCAAGCTGCTGCTATGCCCGGtgtgttccatacagacgctgaagGGTGATCTTTTTATGTCGGTATCTGACACTGAGAGCCAacgaccaagcgtcagtatttaaCGAGTTGGGAGTGGGaacgggtttttttttttttttacagccatgcaTGGTcaccagaggatgaatcctaccaATTTTTGTAAACCTGTGACTTTTCCTCTGGTGCCAATACTTTGGCTTATGGCCAAGCacccccccaccaaaaaaatgacatcaaccTCAGCTATTGTGTTTAGTGTTAATAacaaaatgttagcatgctaacatgctaaactaagatgtcAACAAGGTAGACATCGTGTTTGCATAATATTAGCCTGCCTTGTTGCAATGTTATGAGCCTTACAAATCAAATTCTCtatatttcagatgttttagAGGTGAATATCTCAAAACCTCAGGACGCAAAACCACATCTGCATGGCTTTATACCACACAAGTAAGAAAATATGTGAGATTTAgatgaactgaccctttaataGTCCTTGATTCACCCATCCCTTCCTGTTCATCTACACCTTGGCTTCATGGTCAACAATTAACAGTGGACAATCACCTGGATTCGATTCACTAAACCAGGTCAGGAAAAGAGCAGATGCACTAACATTTTTGTAGATTTTATGTTTGACAACCCCCACTGACTGCAGACCCATTTTCACTCCTAAATAGATATGGGGGAAAGCAGGATTGTGGGGAGCAACGAGAAATACACTCCATACACAATAACTCAATGTAACATTAATGAATACGTTCATTAGGATCTACCAGTGTTACATCCATCTACATTTTTTTGAGTTTGAGTTTTTGCTATTAAGGGGTTacactgcaaaataaaatatttgaacAATTCGACACCAACTCCCATAAAAAAAGACGGctgacattaaaaacacatttttgtggtTATTTTCTATAACTGTTTACAAGATATATTTTTGTTACAGATTTTACAAGATGGTCTTGTTACAAAATTGATTTAAGGTGCTTTTGGTAATTGACTCACAGCCTTGTCATTTAAAGACGGTTTCTCTGTATGGTTTATCGGGCACTGGCAATTTGTTGTCATGTGCATCTGAGATGACTCCATATCAGCTGCAATGTGAATAATTAGCTCTCTTGATAAAAACTAAAACCTCCTGAGGCCTAACGCCACACATCACAATTTATGATGCAGTAATCTTTACTGATTACTAGTCCTCAGGTGATCTCAGTGTAGCCGCCGTCTGCTCTGTGGTTTGTTTTAACCTGGAGAAACTTTGACATTTACAACACTACGATGTGTGATGAAATATTATAATCCACACAAAGCTATCTGTTTGACCATGTGATTTTTCAAGTCGCaagaagaaaataatcaactgtTTTGACGCAACTGAATGTAGGTTTGAGGTTAACTCCTTTTCTTGCTGTTTGTTTTAGCTCATTCCTTGCTGTGTTAGTCATCATAGACAATGATCTGGACAGGATCAGCCCTGCCTTAAGACAAGACCAACTGAGGAAAACAAGTAGGAACAAGGTAGACAAAGGTGTGTATTAGGCAATAATGGGTACACATTTGCTTTACAAAATGGTACACAAGAACAAACCAAACAATGGTTTAAAAAGCTGTCTCGAGTATTATTTGAATGGGAAATGTTTGACAATGGCCGAACGTGGCCAGTATCATTTATCTTGTATACTTGTTTGCACATTGATTGATCCTAGTCAGTATTTCAAAAGGTGTCCACGTGCCTTGTGTTTCATCTGAAATATACCACAGAATATatgaaaaatatttacacaaatgTAAAGTGtataaatgtacttttcattacattttagaaaactgaAATTGAATAACTTGACAACAGATGTGATTTGTACATCAGGGCCACTGCAACACTCTCCAAGGACGTCACcagtgttgatgtctatgacaATGACtcaatgtcaataaaaaaa

Function

GO: NA

KEGG:

id description
K09233 GLIS2; zinc finger protein GLIS2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5571 lncRNA downstream 156266 13195046 ~ 13272174 (-) True G4066
TU5521 lncRNA downstream 271223 13089192 ~ 13157217 (-) True G4032
TU5634 lncRNA upstream 13361 13487920 ~ 13491997 (-) True G4115
XR_005639134.1 lncRNA upstream 45442 13520001 ~ 13536248 (-) True LOC120558524
XR_005639135.1 lncRNA upstream 290634 13765193 ~ 13767856 (-) True LOC120558530
TU5895 lncRNA upstream 544343 14018902 ~ 14021031 (-) False LOC120558548
TU5892 lncRNA upstream 544391 14018950 ~ 14021031 (-) False LOC120558548
XM_039816259.1 mRNA downstream 12767 13408733 ~ 13415673 (-) False LOC120568624
XM_039816252.1 mRNA downstream 16454 13408733 ~ 13411986 (-) True LOC120568624
XM_039809617.1 mRNA downstream 24295 13393147 ~ 13404145 (-) True LOC120564537
XM_039809606.1 mRNA downstream 24299 13393664 ~ 13404141 (-) False LOC120564537
XM_039809627.1 mRNA downstream 26529 13393147 ~ 13401911 (-) False LOC120564537
XM_039799493.1 mRNA upstream 124171 13598730 ~ 13607821 (-) True soul5l
XM_039799341.1 mRNA upstream 135740 13610299 ~ 13623167 (-) True LOC120558365
XM_039799526.1 mRNA upstream 156035 13630594 ~ 13632316 (-) True LOC120558503
XM_039799220.1 mRNA upstream 176191 13650750 ~ 13658617 (-) True LOC120558275
XM_039814145.1 mRNA upstream 312650 13787209 ~ 13805843 (-) True micall2b
TU5471 other downstream 388206 13037280 ~ 13040234 (-) False LOC120560438
TU5472 other downstream 388206 13037280 ~ 13040234 (-) True LOC120560438
TU5473 other downstream 388206 13037280 ~ 13040234 (-) False LOC120560438
XR_005639486.1 other downstream 400047 12991667 ~ 13028393 (-) False LOC120560419
unassigned_transcript_56 other downstream 562401 12865968 ~ 12866039 (-) True trnac-gca_3
TU5715 other upstream 57194 13531753 ~ 13567266 (-) True G4168
TU6167 other upstream 1237644 14712203 ~ 14719102 (-) True LOC120555938
TU6236 other upstream 1426591 14901150 ~ 14904209 (-) False ubl5
TU6504 other upstream 1951985 15426544 ~ 15429556 (-) False sdk1a
TU6856 other upstream 2871211 16345770 ~ 16347922 (-) True LOC120558720

Expression Profile