RNA id: XM_039799939.1


Basic Information

Item Value
RNA id XM_039799939.1
length 1988
RNA type mRNA
GC content 0.47
exon number 10
gene id LOC120558725
representative False

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 22619670 ~ 22634940 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCTGAGACTGCATTGCTGCGAAGTTTACAGTAGCCACATTTGGAGTTTGGGAGTAACTCTGTAGCAGCGCCCAGGACAGTTTTGGTACATTTCAGCTCGTCTTCTTGCTAGCATAAaccggtgtgtctgtgtgtgtatatacatgttCTGAAGACGAGAAAACGTCAGTGAGCGGCATGGATACACAGAGCTAAGCTTTCCATCTGCTGTCGATTTGCAGGTAGATGGTAGCTTTTGTAGTGCTGGTAGTTGGTGACTAGCTAACACGAGAACGTGCTTACGTGTGGGGCATGAGggctttattattttagtttgttACGCAGATTCAGTAAGTTCTATATTTTCTTACTGAAAGAGGCTTCTGCATGGTGGAAGTCTTAACCACCCATAGTTTAGCTAGATGTTAGTGTGGAAACTGCACTACGGGTAATAAACTGACGATTTTTGACTCTTGTGGGGAAACGTAACCAAAACAAATACCACATTGATTCCAGAACAGCATGCCTATTAGGCGTTTTGGGCGTCACgggtctctggtctctcttTCTCAAACTCCAAAGCTGTCCTATGGTTACAAGAAAATGAATCTTTCAAGAAGTGGCTACCGTGTTTTTTCTGCTAACTCCACCACCGCCTGCACCGAGCTGGCCAAAAAGATCACAGAACGCTTGGGTGTGGAGTTGGGCAAGTCACTGGTTCATCAAGAGCCAAATACAGAGACTAGAGTGGACGTGAAAGAGTCTGTCCGTGGACAAGACATCTTTATCATTCAGACCATTCCCAGAGATGTCAACACGGCCATCATGGAGCTGCTGGTTATGGCCTATGCCCTGAAGACGTCCTGTGCCAAGAACATCATCGGGGTCATTCCCTACTTTCCTTACAGCAAGCAGTGCAAGATGAGGAAGAGAGGATCCATTGTCTGCAAGCTGCTAGCATCCATGTTAGCTAAAGCTGGGCTAACTCACATCATCACTATGGACCTCCACcagaaagaaatccagggctTCTTCAGCTTCCCTGTTGACAACCTGAGAGCTTCCCCTTTTCTCATCCAGTACATCCAGGATGAGATCCCAGACTACAGGAATGCCGTAATTGTTGCAAAGTCCCCTTCAGCTGCCAAGCGAGCTCAGTCCTACGCTGAGAGGCTGCGACTCGGGCTGGCAGTGATGCACGGGGAGGCCCATCATTCAGAGTTGGACATGGCTGATGGAAGACACTCTCCCCCCTTGTCCCGCACCACCACAGGACACACCGGCCTGGAGCTGCCATTGATGATGGCGAAGGAGAAGCCACCCATCACAGTTGTTGGAGATGTAGGAGGCAGAATCGCCATTATTGTTGATGATATTATAGATGATGTGGAGGACTTTGTTGCAGCAGCAGAAATCCTGAAGGAGAGAGGAGCCTACAAGATCTACATCATGGCTACACATGGCCTGCTGTCTGCAGATGCACCAAGACTAATAGAGGAGTCTGCTATCGATGAGGTGGTGGTGACCAACACTGTACCTCATGAGGTCCAGAAGCTGCAGTGTCCAAAAATCAAAACTGTGGATGTCAGTATGATCCTGGCTGAGGCCATCCGGCGCACCCACAACGGAGAGTCCATGGCCTATCTGTTCCGTAACATCGCTTTGGATGACTGAGGCAACACACACTTGCATTTACAttcctgcacgcacacacacacacacacacaccgacgaCTATGAATCAAGATTGAACATGTTTCTGCTTTAACctgttgtttctgtttgttttggctgtatttactgtatgtgagaTAAAAAGCAACTCAAACTCTGCTTTATTCTTCTGATATGTTACACAGTGGGACTttacaaacaatacaaacagtTTCACTTCACTAATGTATGCTTCCTACCATCTGAAAACATAAATACCACGACATAATGTAACATGTGCATCCTCTCAGTATGCCACAGAATTTGGCAAATAAAACAGTTCTTGGGGGAGTgaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639888.1 lncRNA downstream 15717 22601388 ~ 22603953 (-) True LOC120562974
TU9185 lncRNA downstream 290298 22328519 ~ 22329372 (-) False LOC120556502
TU9172 lncRNA downstream 294287 22324550 ~ 22325383 (-) True G6762
TU9174 lncRNA downstream 353678 22264384 ~ 22265992 (-) True G6764
TU9134 lncRNA downstream 528113 22090500 ~ 22091557 (-) True G6731
TU9261 lncRNA upstream 16593 22651532 ~ 22653786 (-) True G6834
TU9272 lncRNA upstream 30531 22665470 ~ 22668740 (-) False LOC120565362
TU9327 lncRNA upstream 289892 22924831 ~ 22933891 (-) True G6879
TU9328 lncRNA upstream 337943 22972882 ~ 22973326 (-) True G6880
TU9360 lncRNA upstream 418380 23053319 ~ 23058150 (-) True G6907
XM_039806872.1 mRNA downstream 81160 22412600 ~ 22538510 (-) False LOC120562917
XM_039806869.1 mRNA downstream 81160 22412600 ~ 22538510 (-) True LOC120562917
XM_039796157.1 mRNA downstream 284087 22329263 ~ 22335583 (-) False LOC120556502
XM_039796151.1 mRNA downstream 284498 22329263 ~ 22335172 (-) True LOC120556502
XM_039796116.1 mRNA downstream 299124 22275666 ~ 22320546 (-) True evi5l
XM_039799965.1 mRNA upstream 945 22635884 ~ 22641744 (-) False si:dkey-45d16.4
XM_039799958.1 mRNA upstream 945 22635884 ~ 22641744 (-) True si:dkey-45d16.4
XM_039799979.1 mRNA upstream 19242 22654181 ~ 22665213 (-) True LOC120558762
XM_039799989.1 mRNA upstream 19242 22654181 ~ 22661542 (-) False LOC120558762
XM_039811155.1 mRNA upstream 30436 22665375 ~ 22692333 (-) False LOC120565362
XR_005640901.1 other downstream 580519 22039009 ~ 22039151 (-) True LOC120569580
TU8945 other downstream 909858 21708540 ~ 21709812 (-) True G6592
unassigned_transcript_59 other downstream 1234827 21384771 ~ 21384843 (-) True trnar-ccg_1
unassigned_transcript_58 other downstream 1296691 21322898 ~ 21322979 (-) True trnas-aga
TU8496 other downstream 2574974 20042763 ~ 20044696 (-) False spink4
TU9329 other upstream 346986 22981925 ~ 22988500 (-) True G6881
TU9396 other upstream 453561 23088500 ~ 23164937 (-) True G6924
TU9432 other upstream 578917 23213856 ~ 23242290 (-) True G6943
TU9627 other upstream 937766 23572705 ~ 23573049 (-) True G7065
XR_005638947.1 other upstream 1076888 23711827 ~ 23714086 (-) False LOC120557242

Expression Profile