RNA id: XM_039799958.1


Basic Information

Item Value
RNA id XM_039799958.1
length 2157
RNA type mRNA
GC content 0.45
exon number 7
gene id si:dkey-45d16.4
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 22635884 ~ 22641744 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTCAGTAGGAAACCTGTACTGGTGACTGGACGTGTGCAGTGCGCGTCAGGCGGTTCCCGGATGCACCAAACAGAAACATGGAACGGGTAGTGGTGGAAGTGCCGATCAACAACGGTTTTTCTCTTGCTGGCCCCTCGACAACCCCACGAAAGCGTCAGGTGCGTTTTTCAGCGCGGCATGACATCATCCTTCTGAGGGAGGTTATCGCCCAGAACCCCTTTGCCTCCAAAGAGCCAGGACGGATCTGGGCCCGTGTGGGGGAGATCATCACTGCAGCTCTTCAAGATGAAAACTTTGAGGTGGATGCCAGGAGGTGCAGGGAGAGGACCATGCTTTTGCTGGACTACTACAAGAAACAAGACTTTCCCAGCCTGCGCAGATTTGGAACAGAGAGGTTGTACGCCCAAAAGGAAGATCTGCTCCATGAGGTTTTGGAGCTGGAGGCTGAGAAAGGGCTTCTAGCCAGCGGGGAAAACACAAAGTACCAGGATGATGAACTGAGAAAGCGAGCCATAGAAGAACTAAGTCTACCAGAGCAGGACAAACCCAACATCACcatcacacaaacacccactgCAGCAGAACCAGAGGAAGACCGTGAGGAAATGGCACAGCTTTCAGTGGCGCCCATGGCCAAGCAGCCCTGCCAGTGCTGCTGCCAGACCTACTCTGAGATTCTCAGCTTCCTGGAGAAACGCTCAGAGGCGGAGCAACGGCTACGAGAGGAGGAACTTGCCTTGCGCCGGGAAGAGCTGGAGATTCAAAGGAGTAAGATCACTCTGGAAAGGGAACGTCTGGGAgctgagagaaaagagagggaacGGAGATTTGAGCTGGAGAGCCAAGAGAGGCAGGTCATCTTGGATCTGCTAAAAGAAAAGGTGCTGAaaggctgaaaactgtatcacctGCAATTTAATGCCATCTTTCAAAGCATGAAATTGGGAAACAACATAGTTGACCGCTTAAACGAGGAAGGAAACCAaggaaacaggaagtaaaaAGATCAATGGTTGTAGGGTGTTACATACAGGTTATTGTAAAATAACTAAACAAAATGGAGGGCGGTAAGCAGTTGCCACAACAGCCAAACAAATGACATAATGTTGAGAGTGTCTGGGTGTATGTAGgcatgtattgtgtgtgtggtgcacaAAGTACCAAAAATACATTAACCTGCAGACAGTGTTTAAAAGCTGCAATAATTTCCTGAACCAGCTGCACAAAGCTGACCCATATAGATCCCAGTAGACACTCGCTGCGTTGCTGTCTGAATGGGGATTTAAAAGCACTGCAATTGCTGGAGTGTCACCTAAGAAATGGAATGCAGAAAAgggtgtgtgtgcggtgtcttAGGTGTGGTCATTGACTGAGCCAAAACTGGCTGACATGCAGGATCACTGTTGCACCAATAAGTCCTGTTCACACCAAGGGACACCATTATTTGTGGTGCCAGGGTGAAAGAAATCGAGGAACAACTAAGAAAAGATGTATCTTCAAGTAGTTCACAATAAAGTTATGGTGCAGCTCAAGCTTTTGAAAACCCTGTAGCATTTACCAGATTAATGGCTTCACACATGCTAGATTCAGCCACTTCTTTTTtcaatttgatttttttctttttttattaaaatagaaataaaactatATTTTACTGACTGTGAATCCACTGTACAGAGAGCACTTTTGTACTGCAAATAATACAAGCCATTACGTGGGTGTCCATATTCTATAGATTATACAGAAACCACTTTTTTTAACTTATGTTAGTGTCACAACTGTTGTACACAAATTTTGCTAGAAGATAATTATTAGTCAAATGTATGTCCTCAGTTGAATTTGTTGTACCCAGGTACAGTTAACTGTCATTGGTTATAGTTGCAATATTACATTAACATGGAATTGATGACACGACACTTTTTATTACATGTTCCACTGATttattcaacacattctcactcccatcgcgtaaaatacggattcttggtcaggtgcctttggcgttgttaatGACGCTAAAAATCTCCTTTAGTGtcatatctaaacgcgctttatCTGAAGGCGCTTGGGCGGGACTATtgaagaaagcgacggttgggtttagaaaacgtgacacacgggacacgatccccggtctcctgggtttaagtcctgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639888.1 lncRNA downstream 31931 22601388 ~ 22603953 (-) True LOC120562974
TU9185 lncRNA downstream 306512 22328519 ~ 22329372 (-) False LOC120556502
TU9172 lncRNA downstream 310501 22324550 ~ 22325383 (-) True G6762
TU9174 lncRNA downstream 369892 22264384 ~ 22265992 (-) True G6764
TU9134 lncRNA downstream 544327 22090500 ~ 22091557 (-) True G6731
TU9261 lncRNA upstream 9788 22651532 ~ 22653786 (-) True G6834
TU9272 lncRNA upstream 23726 22665470 ~ 22668740 (-) False LOC120565362
TU9327 lncRNA upstream 283087 22924831 ~ 22933891 (-) True G6879
TU9328 lncRNA upstream 331138 22972882 ~ 22973326 (-) True G6880
TU9360 lncRNA upstream 411575 23053319 ~ 23058150 (-) True G6907
XM_039799923.1 mRNA downstream 944 22619670 ~ 22634940 (-) False LOC120558725
XM_039799912.1 mRNA downstream 944 22619670 ~ 22634940 (-) True LOC120558725
XM_039799939.1 mRNA downstream 945 22619670 ~ 22634939 (-) False LOC120558725
XM_039799931.1 mRNA downstream 1011 22619670 ~ 22634873 (-) False LOC120558725
XM_039806872.1 mRNA downstream 97374 22412600 ~ 22538510 (-) False LOC120562917
XM_039799979.1 mRNA upstream 12437 22654181 ~ 22665213 (-) True LOC120558762
XM_039799989.1 mRNA upstream 12437 22654181 ~ 22661542 (-) False LOC120558762
XM_039811155.1 mRNA upstream 23631 22665375 ~ 22692333 (-) False LOC120565362
XM_039811146.1 mRNA upstream 23631 22665375 ~ 22692333 (-) False LOC120565362
XM_039811126.1 mRNA upstream 23631 22665375 ~ 22692333 (-) False LOC120565362
XR_005640901.1 other downstream 596733 22039009 ~ 22039151 (-) True LOC120569580
TU8945 other downstream 926072 21708540 ~ 21709812 (-) True G6592
unassigned_transcript_59 other downstream 1251041 21384771 ~ 21384843 (-) True trnar-ccg_1
unassigned_transcript_58 other downstream 1312905 21322898 ~ 21322979 (-) True trnas-aga
TU8496 other downstream 2591188 20042763 ~ 20044696 (-) False spink4
TU9329 other upstream 340181 22981925 ~ 22988500 (-) True G6881
TU9396 other upstream 446756 23088500 ~ 23164937 (-) True G6924
TU9432 other upstream 572112 23213856 ~ 23242290 (-) True G6943
TU9627 other upstream 930961 23572705 ~ 23573049 (-) True G7065
XR_005638947.1 other upstream 1070083 23711827 ~ 23714086 (-) False LOC120557242

Expression Profile