RNA id: XM_039800144.1


Basic Information

Item Value
RNA id XM_039800144.1
length 2933
RNA type mRNA
GC content 0.42
exon number 7
gene id LOC120558849
representative False

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 8164960 ~ 8293126 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ggagggagaagaagaagggagTCTGTGCTGAAAGCTTCAAACATGTGGACTTTCTTTACACAACAAGGGAGAAGATGATgtagatgatgatgaagatgatgatcaGCATCTTGCTGCTCATCATCATGCTGACCTCCTGTGTCTCTGGAACATTTGTAGTGAATGTGACCCAGAGCTCCTATCAGGCAGAGGAGAACCAGGACATCACACTGGAGTGGACCTTCACCACCAACAATCACACTTCCTACAACCCTCTTTATATCTTGTGTGAACTGTTAACTGATCTCAGACCCTTAGGTCTGTTTTATCTCCATGGAGGAGTTGAGGTCCCAGAGTTTCAGGATGAACAGTTTGCAGGACGAGTCCAGTGGGACAAAGACGTCTTCAGAGAAGGACGACTCAGACTTCATGTGTCCAGACTCAGGACTAATGATTCgggactgtatgtgtgtaaagtGTTCACGAGTTATGGGTTGAGCTCTGGTAAATGTTGGCTCAATGTCTCTGGAGAGCATCGTCTCACCTGTCCTCAGACCATAGAGGCAGCAGAAGGAGATGATGTCATTATACAGTGTGGTCTGGACCCCCCCGTCGACTTGTCTGACTACACGCTGGATGTGGCGAGACTCGACCTCGGTGACGATGATGGTGATGTCTACTGCTATCGAAGAGGAAAGGACCAACAGGATGACCAGATGGATCGATACAGAGACAGAACAACTCTCAACCATGAAGACCTGATCAGAGGCATCGTGACTCTGAAGATCTCCTCAGTAACTCTGTCTGATAGTGGTCCATACAAAGTCTACGTCCCAGACCTTAGAGCCAGTTTTATCGTTAACATCACTGTTGcacCCAAAGGCCAAGTGAGCGAGACCACAACTAGacctccagctaccagtcctgACTCTGCAAAGGAGGAATCTGACTGGATAATAGTGTTGGCCTGTGTCTGTGGTGTTGTtggtcttcttcttctcctggtGAAACGTGGAGTCATCCagAGTTGCATCGAGAGGCtcagaggaaggaaggagcaaGAACCAGAGACAGCAGGGAATGGATGTGAGATGAAAAACCTGAACATGGAAGCAGCAAAAGGAGATGAAGACCTGGAGAGAGCTGCAGGAAATGGAAACGTCTTACTGTAGGAAACCTCTCTGAGAGCTTgaattcaactttatttatagtatcaaatcataacaagagttatctcaggacactttacagatagagtaggtctagaccacactctatagttTATAAAAAGCCCCAACAATGACAGATGCAGTATTAGAATAGATGCAGATAAAGGTTTTACACAACTCAGACACAACCTGGATCATAATAAGGAGTCCTTTTGGTCCTGATGCAGTATTAGAAAAGGATCTTTACATAAATCTTCTGAGCTGGTCAACAATAAGCCCCCGAACAAAATCATATTAACAACATCCAGGATGGTTTATTACACGGCTGCTCACTAAAGAAATcaaacattttacacattttacacaaatattgatttaaaggcCGAGCTGCAGGGTTCATTTTCCAACAAATTTGTGCAACTTGCTTGTtggtaaataaatgtaaactgttttccgttgtatttgatgttgttgggtatcacaaaacagaatataatatgaaaaagtAGGTACTATTTTACAGAGGTTTACTGTGATTCTcctttcccccacaatgcattgcattacGTCCCCTTGGGGAGACGACAGACCAAAGCCCGCCTTGAGACCCATATTTTTATTAGTTGTCATTTAGTTACCAGACGGAGAGGACTCCTTTTAGTACCCGGGGTATTCCTGCATGTACTGTAACTATGCtgtacttcaatacaactgtaaggtacttttaatggagtattttctattttcattgtacgttttacttctcTATTTTTATAGCTTAGCATATGTATGTATCCACCTTAACCCGGGTTAGGTTGGGACTCTTAATATCAGGGACATAAAGAACGCTGCTTTCCATCCTTTAACAACATTCAAAGTAACTTGAATCTCACACCTTAACCCGGGTTAGATCACCTAGAAGCTTTGGCCCTTATTTTTACCGTCTGTGGCCTTAACCTCACCGTGAGTTGGGACTCTTAAAGGAGAAAATaattcaacacgtagctctgttgtttgtggtCACGGAGgtctgtcagtagcgagaaaactAAACTAATCAGCGTTGCCTACACCGAGTTCTCCTCCTGCTCCagttagcacccaggaggctgaaacggGGCAGGTTTTAAACCTGCTTTTAGCCTCTGAACATGTTGGAGATGTAATTACAAGTGCCTAGACATGAGAACTGATTCCttctgagtgaacacagtgaatatgactgcagtagatgtgaaagaaatacaTAAAAGTCGTGTTAATTCAGCCAGTGCACATACCTCTGTTTTGTTCTGGTGTTCTGGTGAAGTCCACACAAGTCGATTGTCGAACTCATACAATCCATTATTCCAAAAACATATCGGGGACATAACGAAAGCTGCTTTCTATCATTTAAAACTATCCAAAGTGACTTGAAATGACAATTAGTGAACAGAACTGCTGTATGATGACGCAGGATTTTATTTGCTGCACTTTCTTTTGGCTTTTGTTGATGTTGCACTTTGTTAAAACATATTGTATTTATCTGATTCATACTTGGATGTACGAAGCCAAACTTAATGTTCAACTGTAGAACTTATTCCACCTTAAATCTTATTTTTAAATGCCTACATGCTCAAGCTGCTTTTCTCTTAACCGAATGCATTTGTTACAAAACACCAGCACCATGTATCTTTATGGATGTATTTGTgatatttttaatgtatttgtgtatgtactTTACCTTTTTAACTATTCTATTTGTATATCCTTCTTCTTaaagctaaataaagtctttaaaaagcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3959 lncRNA downstream 21587 8138844 ~ 8143373 (-) True G2829
TU3960 lncRNA downstream 23746 8139416 ~ 8141214 (-) False G2829
TU3958 lncRNA downstream 27569 8134678 ~ 8137391 (-) True G2828
TU3888 lncRNA downstream 115490 8044532 ~ 8049470 (-) True G2799
TU3851 lncRNA downstream 196531 7965872 ~ 7968429 (-) True G2767
TU3984 lncRNA upstream 11259 8304385 ~ 8358309 (-) True G2849
TU3910 lncRNA upstream 26193 8319319 ~ 8323227 (-) True G2810
TU4000 lncRNA upstream 89215 8382341 ~ 8383076 (-) True G2860
TU4002 lncRNA upstream 99230 8392356 ~ 8433901 (-) True G2862
TU3941 lncRNA upstream 102793 8395919 ~ 8432724 (-) True G2815
XM_039817181.1 mRNA downstream 69697 8079222 ~ 8095263 (-) True cdc6
XM_039804856.1 mRNA downstream 185503 7969350 ~ 7979457 (-) True taf5l
XM_039816074.1 mRNA downstream 207339 7935940 ~ 7957621 (-) True capn9
XM_039804049.1 mRNA downstream 233556 7915198 ~ 7931404 (-) False ltv1
XM_039804042.1 mRNA downstream 233557 7915198 ~ 7931403 (-) True ltv1
XM_039800239.1 mRNA upstream 5455 8298581 ~ 8332326 (-) True LOC120558897
XM_039800174.1 mRNA upstream 11582 8304708 ~ 8316194 (-) True LOC120558865
XM_039800214.1 mRNA upstream 65435 8358561 ~ 8363673 (-) True LOC120558883
XM_039800275.1 mRNA upstream 141505 8434631 ~ 8444233 (-) True LOC120558917
XM_039800227.1 mRNA upstream 156812 8449938 ~ 8457347 (-) True LOC120558891
TU3830 other downstream 401012 7739824 ~ 7763948 (-) True G2752
XR_005640903.1 other downstream 592503 7572321 ~ 7572457 (-) True LOC120569585
XR_005640913.1 other downstream 607062 7557767 ~ 7557898 (-) True LOC120569612
XR_005640861.1 other downstream 792402 7331956 ~ 7372558 (-) True LOC120569296
TU3357 other downstream 924832 7225340 ~ 7240128 (-) True commd1
TU4012 other upstream 190586 8483712 ~ 8501141 (-) False wipf2a
TU4151 other upstream 465523 8758649 ~ 8767973 (-) True G2938
TU4231 other upstream 612546 8905672 ~ 8908086 (-) True G3011
TU4635 other upstream 1232417 9525543 ~ 9549898 (-) False G3312
TU4646 other upstream 1256855 9549981 ~ 9567228 (-) False LOC120559295

Expression Profile