RNA id: XM_039800275.1



Basic Information


Item Value
RNA id XM_039800275.1
length 949
RNA type mRNA
GC content 0.49
exon number 5
gene id LOC120558917
representative True

Chromosome Information


Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 8434631 ~ 8444233 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


GCAGCACACAGCTGAGTTTGTTGTCATACAGACTGTAAGCAGCAGCCGAGTCAACACGCAGTCCTACGGTTTAATATCACTTTATCACTGTCTGGTTGCCTGTTTTTAATTCATTGCGATAATGAATGTTGTCGTGTTCCTGTTAGCCTCCATCTTTCTGTGTGCTGCACCTTCTTCAGAAGCCGGAGAGCATCGTCTCACCTGTCCTCAGACCAAAGAGGCAGCAGAAGGAGATGATGTCATTATACGGTGTGGTCTGGACCCCCCCGTCGACTTGTCTGACTCCACGCTGGATGTGGCGAGACTCGACCTCGGTGACGATGATGGTGATGTCCACTGCTATCGAAGAGGAAAGGACCAACAGGATGACCAGATGGATCGATACAGAGACAGAACAACTCTTAACCATGAAGACCTGATCAGAGGCATCGTGACTCTGAAGATCTCCTCAGTAACTCTGTCTGATAGTGGTCCATACAAAGTCTACATCAAAAAGCTGCGAGCCCATTCTGTTATTAACATATCTGTTGtgaGCGGGACAAAGAGAAATGATTCCAGCACGTCTGGACCTCCAATGGGAGAAGAGACAGAGCATCGGGGGGGCTCTGCAAAGAAGACATCTGTCTGGAAAATAGTGGTTCCCATTGtctgtgttgctgctgttgttgctgctgctgctgctgctgctgtgatcTggaagaagaggaaagcagcagagacgagTGGAACGATGAAATACCAGAGGCCAGAGGAGGACGCACTGTAGACCCACACAGTGCTGCAGGACACGGTCTGAGAGAGTCGGTGGTCGGAGACCGTAAAAACACATCCAAACTTCATCCGCTTAACCCTCTACGGCATGAAGTATTTAGTATTGGTGAAAaatattgtctgtctgtctacaagctgtcaattttcgggttatggtcgggttaaagtgatggttgag

Function


GO: NA

KEGG:

id description
ko04110 Cell cycle
ko04113 Meiosis - yeast

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU4002 lncRNA downstream 730 8392356 ~ 8433901 (-) True G2862
TU3941 lncRNA downstream 1907 8395919 ~ 8432724 (-) True G2815
TU4000 lncRNA downstream 51555 8382341 ~ 8383076 (-) True G2860
TU3984 lncRNA downstream 76322 8304385 ~ 8358309 (-) True G2849
TU3910 lncRNA downstream 111404 8319319 ~ 8323227 (-) True G2810
TU4010 lncRNA upstream 16303 8460536 ~ 8468700 (-) True wipf2a
TU4021 lncRNA upstream 19456 8463689 ~ 8464787 (-) True G2874
TU4030 lncRNA upstream 60901 8505134 ~ 8510325 (-) True G2878
TU4032 lncRNA upstream 65230 8509463 ~ 8518597 (-) False G2878
TU4036 lncRNA upstream 65230 8509463 ~ 8518399 (-) False G2878
XM_039800214.1 mRNA downstream 70958 8358561 ~ 8363673 (-) True LOC120558883
XM_039800239.1 mRNA downstream 102305 8298581 ~ 8332326 (-) True LOC120558897
XM_039800174.1 mRNA downstream 118437 8304708 ~ 8316194 (-) True LOC120558865
XM_039800144.1 mRNA downstream 141505 8164960 ~ 8293126 (-) False LOC120558849
XM_039800161.1 mRNA downstream 141506 8248294 ~ 8293125 (-) False LOC120558849
XM_039800227.1 mRNA upstream 5705 8449938 ~ 8457347 (-) True LOC120558891
XM_039801777.1 mRNA upstream 19149 8463382 ~ 8501162 (-) False wipf2a
XM_039801786.1 mRNA upstream 19149 8463382 ~ 8501162 (-) False wipf2a
XM_039801767.1 mRNA upstream 19149 8463382 ~ 8501162 (-) False wipf2a
XM_039817201.1 mRNA upstream 68012 8512245 ~ 8517252 (-) True c1h6orf120
TU3971 other downstream 225096 8207252 ~ 8209535 (-) False G2840
TU3972 other downstream 225096 8207252 ~ 8209535 (-) False G2840
TU3973 other downstream 225096 8207252 ~ 8209535 (-) True G2840
TU3830 other downstream 670683 7739824 ~ 7763948 (-) True G2752
XR_005640903.1 other downstream 862174 7572321 ~ 7572457 (-) True LOC120569585
TU4012 other upstream 39479 8483712 ~ 8501141 (-) False wipf2a
TU4151 other upstream 314416 8758649 ~ 8767973 (-) True G2938
TU4231 other upstream 461439 8905672 ~ 8908086 (-) True G3011
TU4635 other upstream 1081310 9525543 ~ 9549898 (-) False G3312
TU4646 other upstream 1105748 9549981 ~ 9567228 (-) False LOC120559295

Expression Profile