RNA id: XM_039801145.1


Basic Information

Item Value
RNA id XM_039801145.1
length 2603
RNA type mRNA
GC content 0.52
exon number 9
gene id LOC120559457
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 9396830 ~ 9412357 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ccGCTCGTCTCTGGAAACATCCTCCCCGGTCTCCTCCTTCTGCATCGGGTTCATCTGCGTTGCCCTGAGCCATGTCCATATTCAGCGATGTCCCGCTGGCTCCTCCGGTAGCGGTTTTCAAACTAACTGCCGACTTCAGGGAGGATGGCAACCCGCAGAAGGTGAATCTGGGAGTTGGAGCGTACCGTACCGATGACTGCCAGCCCTGGGTGCTGCCGGTGGTGAAGAAGGTGGAGCGCATGATCGTGGAGGACGGCAGCCTGAACCACGAGTACCTGCCCATCCTCGGGCTGCCCGAGTTCCGCTCCGCCTCGGCCAAGGTTGCCCTGGGCGACGACAGCCCCGCCATCAAAGACAACAGGGTGGGAGGGGTCCAGGCTCTCGGGGGGACAGGTGCTCTGAGGATCGGGGCAGAGTTCCTGCGGCGTTGGTACAATGGCGTCAACAACACGGCCACGCCTGTCTACGTCTCAGCGCCCACCTGGGAGAACCACAACAGTGTGTTTACTGACGCTGGCTTCAAAGACATCCGGCCATACCACTACTGGGACGCTGCTAACAGGGGCCTGGACCTCGCCGGGCTCCTGGATGACCTGGAgAAAGCTCCAGAACGCtccatcttcctcctccacgCCTGCGCACACAACCCCACCGGCACCGACCCGACCCAGGACGAGTGGAAGAAGATCGCCGAGATCATGAAGAGGAGGAACTTGTTTGCGTTCTTTGACTCGGCCTACCAGGGTTTCGCCTCCGGCAATCTGGAAAAAGATGCCTGGGCCATCCGCTACTTTGTCTCGGAGGGCTTTGAGCTCTTTATAGCTCAGTCCTACTCCAAAAACTTTGGCCTTTACAATGAGAGAGTTGGCAACCTGACCGTGGTCGCCCAGGACAGCGAGAACCTGAGCCGCACCCTGTCCCAGATGGAGAAGATTGTCAGGACGACTTGGTCCAACCCGCCGTCTCAGGGAGCACGCATCGTCAGCAAGACGCTCAACTGCCCCGAGCTCTTCGCCGAGTGGAAGGGTAATGTGAAGACCATGGCAGACCGTGTCCTATTGATGAGGGATCAGCTCAAGTCCAAGCTGCAGGATCTGGGCACCCCAGGGACCTGGGACCACATCACGCAGCAGATCGGCATGTTCAGCTTCACCGGCCTGAACCCCAAACAGGTGGAGTACATGATCAAAGAGAAGCACGTGTACCTGATGGCCAGCGGCCGCATCAACATGTGCGGTCTGACCACCACCAACATCGACTATGTCGCCCAGTCCATCCACGACGCGGTCACCAAGGTCCAGTAAAGGCTGCTTCCCTCCGCCCACTTCCTGCCTCCTGCCTCCTGCACTGTACGCCACAGGAGGTTCTCACCATGTCTGTGCCCTTGTACCCCCTCCCCCCTGCTCATCCTggcctctgattggttgaactgCAGCAGGGATTTAGCAGTTGAACCAATGGGAGGAcggatgatatatatatatttttttttctttctgttctcACATGAAGGTATGAATCTAACGGAGGGGCGACGATTTTAGTAAGACGCACAAAAGCTAGGCATGCTTGTCAGCACAGCTCCATACCAGAATGGGTCAAAGTtgagaacattttttttctttttattcaggTCCCTGCAtttttagcctgtttttgtGCAATTTCAATCACATCTGTTCACAGAAGACCACTTGAATATTTGCTTTCTCTGTCAGGGTGTCCCCCGCCCCCCGGAAAAGTGGTTTAGCCCGGTGGCAAATGTCTGTTCAATGACGAGGGCCCGGCTGGGGCCAGTcccagactgatggcagcagtaacgtagagcccaatagtttgTGTGATACCAAATAATGGACTGAATTGTGAATTAAGAATTTTAAAAAGCTATAAGACGGACTCCATAGGGCCGTAAAAGCTAGATGGACATTTGAAAATAAGACCGAGCCCCCCCCACTGTAactgtggtttaaaaaaaaaaaaaacttttgtcaTGTTTAGCATTTCAAGGGATATGTCATGACATAGCTATAGAATTGACCAAAATGCCTGCTTGATGTAAATAGATGTAACAATCACTGTTAGAGGTCCTACTATTTCCTGCAGAAGCACTGAAGTCCTGCTTTACTTCAGCTCTGAGCCCATAACACAtctgttttcctttttgtcAACCATCACAATTTACTATttcaatatatgtatatttaatgCATAATCAACTCATCCCAGGACATTTCCTATGCTGAAGTCTGAAGAAGGTCATTGTAAGCACAGCGGGTATGTTCCCGGTCACTTAAAGGTAAATGCATGTGCCTGGTGTTTTTAGGCTTTGCCTTGTCAGACCTGTGCAGCTACGTAGATCGTAATGTTAGTTGGAAGTTGTGCCATCCGTGAACAAAGtggcctctccttcctctttctggTGTCTTTCTCtccaccctgcagtgcccttgTGGAGTTACAGAAAGCCTCTGTAAAGTCAGTTGTTGTGATGACACCTGTTCGCCACATAACCACACTCCCTTTATGTGGTGTTGTTTGTAATGTCACACTGCAGTATGTGTGCTCATattgaaataaattataaacCATAAGAACCCAAA

Function

GO: NA

KEGG:

id description
K14454 GOT1; aspartate aminotransferase, cytoplasmic

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4277 lncRNA downstream 236658 9155939 ~ 9160172 (-) True G3049
TU4276 lncRNA downstream 243131 9153250 ~ 9153699 (-) True G3048
TU4285 lncRNA downstream 270130 9126183 ~ 9126700 (-) True G3053
TU4283 lncRNA downstream 272819 9122785 ~ 9124011 (-) False G3052
XR_005639308.1 lncRNA upstream 62329 9474686 ~ 9476015 (-) True LOC120559537
TU4642 lncRNA upstream 62337 9474694 ~ 9476011 (-) False LOC120559537
TU4643 lncRNA upstream 62337 9474694 ~ 9476011 (-) False LOC120559537
TU4661 lncRNA upstream 81437 9493794 ~ 9494486 (-) True G3331
TU4637 lncRNA upstream 96247 9508604 ~ 9526388 (-) False G3312
XM_039801172.1 mRNA downstream 65276 9304947 ~ 9331554 (-) True hoga1
XM_039800886.1 mRNA downstream 149925 9165988 ~ 9246905 (-) True lcor
XM_039811212.1 mRNA downstream 385252 9006939 ~ 9011578 (-) True LOC120565400
XM_039801061.1 mRNA downstream 441988 8943845 ~ 8954842 (-) True LOC120559379
XM_039800053.1 mRNA downstream 477686 8912382 ~ 8919144 (-) True dla
XM_039801126.1 mRNA upstream 65323 9477680 ~ 9489740 (-) True LOC120559444
XM_039801132.1 mRNA upstream 65323 9477680 ~ 9489641 (-) False LOC120559444
XM_039800965.1 mRNA upstream 112904 9525261 ~ 9567845 (-) False LOC120559295
XM_039800931.1 mRNA upstream 112904 9525261 ~ 9567845 (-) False LOC120559295
XM_039800973.1 mRNA upstream 112904 9525261 ~ 9567247 (-) False LOC120559295
TU4231 other downstream 488744 8905672 ~ 8908086 (-) True G3011
TU4151 other downstream 628857 8758649 ~ 8767973 (-) True G2938
TU4012 other downstream 895689 8483712 ~ 8501141 (-) False wipf2a
TU3972 other downstream 1187295 8207252 ~ 8209535 (-) False G2840
TU4635 other upstream 113186 9525543 ~ 9549898 (-) False G3312
TU4646 other upstream 137624 9549981 ~ 9567228 (-) False LOC120559295
TU4721 other upstream 613913 10026270 ~ 10042004 (-) True G3373
TU4974 other upstream 1487201 10899558 ~ 10905235 (-) True G3586
TU4966 other upstream 1565286 10977643 ~ 10993201 (-) False nacc1b

Expression Profile