RNA id: XM_039801851.1


Basic Information

Item Value
RNA id XM_039801851.1
length 2009
RNA type mRNA
GC content 0.49
exon number 8
gene id LOC120559819
representative False

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 17246549 ~ 17256447 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cctaggaGGTGAACCATGGGGAGCgAAAAGGAGATGGCCAAATATAAAGCAAAGATCAACAGCAGTGTCAGCTTAGCTCCACCTCAGACTCGGTCACTCAGGTCAAGGAAAAGGGAATGTCCAAGTGATGAAATCTCAGAGACTGAGGATGTTCAGGCTGTTCTCCATCCTCAGAATACTGAAGGAGATGACACAGCAGTGgatgctgctctgctgcagtgCCACCAGCCCCCTCTGCAGGAATCTATTATGATTTCAACTCAGCAGCATGAGGCAGCAGAACAGTCCTGTCTCACCAAACAAGATCCTGACACACACGAAAAACATAAAGAAGCAACATATGTTTACTTAAATGGGACAGGTAAAGCTTTTGAAGAGCAAGAAGAGACTACAGTCACCAATCCCAACAATAATTCTCAGCCGGAGGGCTTAAGGGTACATGCTGATAATGATGCCACCAAGAGTGGAAAGGGCAAGGATGAAATGACTGCAGAGGAATGTTGCAGATCACCATCTCAAACATGCACTGATCAACTTGAGGTCTTCTTGCCAATCTCTGAAGAAGGTGATGGAACTGCTTTGGAGGAGCAACTGGTTGCAGAGGATAACGCTCAAtgtaatttggaaaaaaaacaagaaaccaGCCGACAAGAACCCAGCAGTGTGTACGTGGCCGATGTTAAGGAAATCACAAAGGACGCAGCAGTGGGCTTACCGGCCAAAAAGAAGCGAAGGATGGGTATGTGTGGTCTGACAGAGAGGGAGCGGAGTCACTTTTTACAGACACAAAAACGTGAGAACGGGCAGAATGGACCGGAGAGAGCTGAGAAGCAGATTTGTAATGACACAGCTGACCTTGTGGCTCAGGAAAAGATTGTATCTTCAACCCCGTTATCATACTCAGTATCCATCCCAGTAGGCAGTGTCACAGAGCAGGGCGAGGCAGAGATGAAACTTCAGTCCAGTCCCTGTGGAGAGGATGGCAGGGCAGAAACTGAAGTCCACTTTGCTGTCCCTACCTCAGATGGGACCGGCACTGTGTGTGATCTGGGCTGCTTGAAGGGAAAGAGTTGTGAGGTTGAAGGAGGCATAGTGCCTGATCCAGAGCAAACTGGTGACACAAAGTCAGACCCACCTGCAGAGGAGGAGCTTTTGGGGAATCAGGAGCAGCAGGAACTTGAGGGACGCACAGCTGAGATTGTGGCTGAAAAACCTCAGGAACAAATAAAAGATGGGGAAGATGGGTCAGTACTAGTAAACCAAAGTCCTGCCTTCACTTTTGACTCTAATCCAACTGAAAATGAGGAGACTGAGAACCGGGATGCAATCAAGGCTGCCCTTCTTCAAGTGAATGGTGCAACCAGGGCAAAAGATGAGAAGAAGGAAGAGTTGACTGCTGATGCTGGGGACAGTGACGGACCTGAAGCAGACGTTTTGTCCACAGACACCCGGTCAGCAGAATTCACCGCTGTGGAGCTCTGCGAGGCTGCAGTGACACCCAGTGGCTCAGGGAGGAAAGAACCCGGGGATTGCGATGACAAACCTGAGCCCCCTCAGACCAGGGACACCTCTGACCCGTTTGGATCTGGGTACTTGGATTACGTGTCGGACTCGCAGCTGAACACCATCGTTCTGACTGAGGtgatggagaaggaggaagatCTTGGTTCTGCAGACTGTCATGAAGATGCTACAGACCTGATCTGTGGACTCGTCAGAGAACTCTCCTCTCTAAATCGTAAGGTCATGGCCACTCATAGAGAGCTGGAGAACCTGCGCCGTGGCAGTAAAGCTTCAAGGAGCGCCAGCCGTTGAGGATTCGTTTCAAGTCCCTGCCATCCTGAGCTTATTGTTGCCCTAATGGTTTGTGGGTAATGAAGTCACTTTTAAAGGTTACTatacaatgtttgttttttactcttgTACTATTGACCGCTGGAATGTTCAGTTTAAATAGCTCAGTTGTTCTTGTTTTCCCTAAATAAAGCTGGGTGTTGTTTATTACGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7264 lncRNA downstream 60167 17182647 ~ 17186382 (-) True G5376
TU7261 lncRNA downstream 60746 17178399 ~ 17185803 (-) True G5375
TU7243 lncRNA downstream 124331 17114975 ~ 17122218 (-) True G5361
TU7110 lncRNA downstream 165152 17079161 ~ 17081397 (-) True G5270
TU7108 lncRNA downstream 167531 17076316 ~ 17079018 (-) True G5268
TU7332 lncRNA upstream 55123 17311570 ~ 17311817 (-) True G5418
TU7313 lncRNA upstream 60829 17317276 ~ 17317820 (-) True G5402
TU7349 lncRNA upstream 75310 17331757 ~ 17333610 (-) True G5430
TU7366 lncRNA upstream 92428 17348875 ~ 17350975 (-) True G5435
TU7384 lncRNA upstream 143458 17399905 ~ 17448034 (-) True G5449
XM_039795568.1 mRNA downstream 85393 17155731 ~ 17161156 (-) True sgsh
XM_039795539.1 mRNA downstream 92045 17152922 ~ 17154504 (-) True npb
XM_039803688.1 mRNA downstream 250908 16985394 ~ 16995641 (-) False notum1b
XM_039803681.1 mRNA downstream 250929 16985394 ~ 16995620 (-) True notum1b
XM_039805535.1 mRNA downstream 280324 16957612 ~ 16966225 (-) True tmc8
XM_039817320.1 mRNA upstream 30519 17286966 ~ 17291473 (-) True LOC120569451
XM_039789756.1 mRNA upstream 78490 17334937 ~ 17338618 (-) False si:ch211-196h16.12
XM_039789933.1 mRNA upstream 78490 17334937 ~ 17338617 (-) False si:ch211-196h16.12
XM_039789851.1 mRNA upstream 78490 17334937 ~ 17338553 (-) True si:ch211-196h16.12
XM_039797436.1 mRNA upstream 113057 17369504 ~ 17385031 (-) True rfx1b
TU6856 other downstream 898627 16345770 ~ 16347922 (-) True LOC120558720
TU6504 other downstream 1816993 15426544 ~ 15429556 (-) False sdk1a
TU6236 other downstream 2342340 14901150 ~ 14904209 (-) False ubl5
TU6167 other downstream 2527447 14712203 ~ 14719102 (-) True LOC120555938
TU5715 other downstream 3679283 13531753 ~ 13567266 (-) True G4168
TU7590 other upstream 454199 17710646 ~ 17713898 (-) True LOC120560175
TU7616 other upstream 574245 17830692 ~ 17835761 (-) False epn3b
TU7631 other upstream 587489 17843936 ~ 17845404 (-) False LOC120556682
TU7664 other upstream 623421 17879868 ~ 17881759 (-) True LOC120556582
TU8084 other upstream 1628521 18884968 ~ 18890220 (-) True G5930

Expression Profile