RNA id: XM_039803699.1


Basic Information

Item Value
RNA id XM_039803699.1
length 3675
RNA type mRNA
GC content 0.45
exon number 17
gene id suz12b
representative False

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 23543467 ~ 23556250 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGCCATCGGCCAGGAACTCCGGTCATATTATGAGTGGGGCGAGTTGCAAAGCTAACGGCGCTGTGTACCCCGCCTCATCAGCAATGATGAACTCTGTGAAGAAGCCGAAGATGGAGCAGATTCAGGCCGACCATGAGCTGTTCCTACAGGCCTTTGAAAAACCAACTCAGATATACAGATTCCTCCGCACAAGGAATTTGATTGCAcCAGTATTTTTGCACAGGACGCTCACTTTCATGTCTCACAGAAACGGCCGAACAAATGCCAAAAGGAAAACATTCAAAGTGGATGATATGTTGCAGACAGTTGAGAGGATGAAGGGAGAGCAGGATTCTTCAAGTTTGTCTTCACATCTACAATTAACCTTCACTGGGTTCTTCCATAAGGATGAAAAGCCATCTCAGAATTCAGAAAATGAACAAAATTCTGTGTCCTTAGAGGTGCTACTTGTCAAAGTCTGCCATAAAAAACGCAAgGATGTCAGCTGCCCGATAAAGCAAGTGCCTACAGGTAAAAAGCAGGTGCCTTTGAATCCAGACAGTAACCAAACCAAGCCTGGCTCCCACCCCTCCTTACTGGTCTCCAGCAACGAGTTTGAGCCCAGCAACAGCCACATGGTCAAGTCCTACTCGCTCCTGTTCAGGGTGTCACGCACAGGGAGGAGGGATACTAATGGTCTGGTCAACGGAGAGGCCAACGAGAACATTGatGTAACAGATACTCCTAGTAGAAAGAAGAGAAGTTCATCCCATAGAGATGAGGGAGAGACCACAGAGACCTTTGTTGCACAGATGACTGTCTTTGATAAGAATAGGAGATTGCAGCTGCTGGATGGGGAATACGAGGTGTCCATGCAAGGGATGGAGGACAGCCCTGTCAGCAAGAAGCGGGCTACGTGGGAAACCATTCTTGATGGAAAGAGACTGCCACCATTTGAGACATTTTCTCAGGGACCCACATTGCAGTTTATGCTGCGTTGGACAGGTGATGCTAGCGGAAAGTCCACTGCTCCCGTGGCAAAGCCCCTTGCTACACGCAACTCTGACAGCTCCAGCCCCATGGAGACTAGAACCAGCAATCACCGAGCTGCCCTCATGACAGTGAAAGAGTCAGTCAGCACAGACATTCAGACGAGGAAAGAGCAGGTCCTGTGTGAGCCGCGGCAGAAGCTACGTATATTTTATCAGTTCTTGTACAACAATAACACGCGGCAGCAAACCGAGGCGAGAGATGATCTTCACTGTCCCTGGTGTACCCTGAACTGCAGCAAACTCTACAGCCTGCTCAAACACCTCAAACTCTCCCACTCCCGCTTCATCTTCAACTATGTGCCTCACCCCAAAGGAGCAAGGATAGACGTGTCCATCAATGAGTGCTATGACGGCTCGTACGTTGGCAACCCTCAGGACATCCACAGCCAACCCGGCTTTGCTTTCAGCCGCAATGGCCCAGTTAAGAGGACTGCCGTCACTCACATATTGGTTTGCAGGCCCAAGAGAACCAAACCAAGTCTGTCAGAGTTCCTGGAGTCTGAGGACGGAGAGTTGGAGCAGCAGAGGACCTATGTCAGCGGACACAACCGCCTCTACTTCCACAGTGACAGCTGCATGCCCCTGCGGCCccaggagatggaggaggacagCGAGGACGAGagagatccagagtggctcagAGAGAAGACTGCCACGCAACTGGATGAGTTCACAGATGTCAATGAGGGAGAAAAGGAAGTGATGAAGCTGTGGAACCTGCACGTCATGAAGTATGGATTCATAGCAGACAACCAGATGAATCAGGCCATCATGCTGTTCGCTGAGAACACTGGTGCTCATATCATCCGCCGCAACCTCTGCCGCAACTTCCTCCTGCATCTGGTCAGCATGCACGACTTCAACCTGGTGAGCACAGCCACCATTGACCGCGCCATGGCCCGTCTGCGACAGATCCAAGAAGAGCTTCCAGACAccgaggaggagcagcaggaccAGACTGTGGTATCAGCAGGCGCCTGCAATGGCAATGCCGTCACCTCCACCGGAGGGAAACAGGGCAAGAGGACAAAAAGCGCACTAACAGACTGATGTAggatggatggacggatggatggacagatggaTGGAACAACgactgttgtgttttgttttcttcttcaatGAACATTACCAACCCTTTGGTGCTTAGATAGGTGGGAGAACTGGTCTGTGCAGAATCTGACCTGAAGCAGACCAGCATACAAGGTAAACAAGTTTTTGGAACTTGAGAACTGAACCAAATATGAACAATATAAAAGTGAATCACCCACATCTACACAAACCAGGAATTTGAGGACTGGGTGATGTAAGTTGAACCTACTAAATATGCATTTTGTAGGAGCCGCTGAAGTGTTTGGGTGAGAGAGTGAACAAACTTGTCTTTTGATGTGGCACGACTACCTGTGGTATGTCCATGTTATAGACAACTGTATGAAGACTACAGTTCAAAATGTACAGGTAACATTGTCACTCTTGATTATttgtacacatacacaataaCCTTGTTGACAGCTTATCCTTTTAGCTGATTATTTTAGCACTTGGTGTTTGTATTTAGAAATGTTACCttgaaattgtctttttttttttttttttttttttcaattcaggCTGCGCTAATTGTTAAATGCAGCTTCTTTACTGTCAGTGGAGAAATGTTAGTGGGTTTATTTTCACTGTTGTGAATGACATTTAATTTGAAGGGTCATACAGTAACAGTAAAAATCTACACTATTGGCATCAATGTCTAGAGTATATAAAGCCTGTAAGGCTTGTGTTAGGCCCCCCAAATGAATTGTGGGTTTTGCTGGTAGGTTGCCATGACGATAGTGATGTACCATAAGCTTTGATTCCTGAACAAGAGAATAAATTCTGATTTGGGTCCATGCTAAAACTCCTGCATGTACTTCATCACCCCTAAGCCTGTTGGCCTGCATTGATAAAGCTCAAGGAAAGCCAGGGAAATCAACTTTTTTCCCCCGAAGATTTACTGAAACAACCAGCAGCACATCGCCCCATGTTTCGTGCAGAGTGCATAGCATTCAAGATATAGAAGTCAAGTTTTCTGATGACCTGTAGTTTTTCAACTTTGAGATTTGAACATGTTGCAATCACAATGTTAAACGTGTTTGAAGATGGGTTCTGCGTGTCAGTAGCTAttgacagaaaatgtgtttccaTGTACTCACGTCAAATGTTTAGATGTGCCCTTTTCTGAATCCAATAATTAACAGATTGTAGTTCTTCTCTCAAAGCAATATGTCAGTTTTCTGTCCTGTTAGGTGCAATTTATGCCAAAGGCGGATATTTTCATCAGTCTTAGTTCTGTATATTATTTAGCATCTTTTCTTTTGTTCATTCCATAATGAGTTttgaagagaggaaaaaaaagcagcactAGTTGTTTTGTAGTGTGCACATTAATTGGTAATCATCACCACTCAGTTTCATCAGACTTCCCTTGTGGCCAACCAACAATATATTTTTCCTCCCTCCATTATTCATGGAAGGTTCCTGTATTCATCTGGGAAATGGGAGACCTATTCACTATCATTGTTAAAACACCCTGTAAAAAAATTGTGATCTGTACACTCTGGCTAGGGggatttttatatttaaagaaataaaatacatttgaccTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU9508 lncRNA downstream 34907 23508274 ~ 23508560 (-) True G6995
TU9506 lncRNA downstream 114322 23427512 ~ 23429145 (-) True G6993
TU9498 lncRNA downstream 134265 23408277 ~ 23409202 (-) True G6986
TU9441 lncRNA downstream 289591 23250195 ~ 23253876 (-) True G6947
TU9410 lncRNA downstream 409153 23132890 ~ 23134314 (-) False LOC120556418
TU9616 lncRNA upstream 10828 23566760 ~ 23570673 (-) False LOC120555765
TU9617 lncRNA upstream 10828 23566760 ~ 23570673 (-) False LOC120555765
TU9618 lncRNA upstream 10828 23566760 ~ 23570673 (-) True LOC120555765
XR_005638754.1 lncRNA upstream 11628 23567560 ~ 23571034 (-) False LOC120555765
XR_005638753.1 lncRNA upstream 11628 23567560 ~ 23571033 (-) False LOC120555765
XM_039807087.1 mRNA downstream 1506 23535582 ~ 23541961 (-) False atad5b
XM_039807077.1 mRNA downstream 1509 23535582 ~ 23541958 (-) False atad5b
XM_039807067.1 mRNA downstream 1509 23535582 ~ 23541958 (-) True atad5b
XM_039805874.1 mRNA downstream 11425 23525332 ~ 23532042 (-) True LOC120562252
XM_039805878.1 mRNA downstream 13386 23525332 ~ 23530081 (-) False LOC120562252
XM_039794846.1 mRNA upstream 94691 23650623 ~ 23656256 (-) False LOC120555782
XM_039794864.1 mRNA upstream 94691 23650623 ~ 23655950 (-) False LOC120555782
XM_039794855.1 mRNA upstream 94691 23650623 ~ 23655789 (-) True LOC120555782
XM_039797373.1 mRNA upstream 101405 23657337 ~ 23685439 (-) False rab11fip4b
XM_039797366.1 mRNA upstream 101405 23657337 ~ 23685439 (-) True rab11fip4b
TU9432 other downstream 301177 23213856 ~ 23242290 (-) True G6943
TU9396 other downstream 378530 23088500 ~ 23164937 (-) True G6924
TU9329 other downstream 554967 22981925 ~ 22988500 (-) True G6881
XR_005640901.1 other downstream 1504316 22039009 ~ 22039151 (-) True LOC120569580
TU8945 other downstream 1833655 21708540 ~ 21709812 (-) True G6592
TU9627 other upstream 16773 23572705 ~ 23573049 (-) True G7065
XR_005638947.1 other upstream 155895 23711827 ~ 23714086 (-) False LOC120557242
TU9637 other upstream 196094 23752026 ~ 23768841 (-) True G7071
TU9657 other upstream 218793 23774725 ~ 23810964 (-) False palm3
TU9658 other upstream 218793 23774725 ~ 23780324 (-) False palm3

Expression Profile