RNA id: XM_039805162.1


Basic Information

Item Value
RNA id XM_039805162.1
length 8270
RNA type mRNA
GC content 0.48
exon number 26
gene id LOC120561855
representative False

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 24286462 ~ 24361503 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGCCATTATATTTCATGGCAGCAGCCGTTGTGGGTCTGCAcctagaggaaatgaaaagtcTTTGTTGCTTGGTCGCTCTACCTTATGGTTGCAGAACCAGTAACCGGAAAAGCCTCATCCTGACCAGCACGTCGCCCACCCTGCCACGGCCACACTCTCCACTGCCTGGACACATAGGAAGCAGTCCGTTGGACAGCCCACGCAACTTCTCACCAAGTGGACCTGCCCACTTTTCCTTTGCCTCCTCTCGCAGGGCTGATGGTCGTAGATGGTCCTTGGCTTCTCTGCCTTCCTCAGGATATGGCACCAATACACCCAGTTCAACATCATCCAGCTCATCCCAGGAGCGTCTGCACCAGCTGCCCTTCCAGCCGACCATGGATGAGTTGCACTTCCTGTCCAAGCACTTTGGCAGCACCGAGAGCATCACGGACGATGACGGGGGCCGACGCTCGCCGCATGCCCGCCCTCGCTCTCGAAGCCTCAGCCCAGGGCGCTCTCCATCCTGCTATGACAATGAAATAGTGATGATGAACCATGTCTACAAGGAACGCTTCCCCAAGGCCACAGCTCAGATGGAGGAGAGGCTGGCAGAGTTCATCCACAACTACTGCCCAGAGAGCGTCCGGCCACTGGCCGATGGGGTCCTTAGTTTCATCCACCACCAGGTAGCTGAGCTGTCCAGAGACTGCCTGACCAAATCACGTGAGGGTCTCATCACCAGTGTCTACTTCTGTGAACTGCAGGAGAACCTGGAGAAGCTGCTGCATGACGCTTATGAGCGCTCAGAAAGTTCGGAGCTCACCTTCGTCATTGAGCTGGTCAAAAAGCTCTTCATCATCATATCTCGTCCAGCCAGGCTCCTCGAGTGTTTGGAGTTCAACCCTGAAGAGTTTTACCATCTGCTGGAGGCAGCGGAGGACCATGCCAAGGAGGGACAACTGATGAAGGCAGACATCCCTCGATACATCATCAGCCAGTTGGGGCTGACTAGAGACCCACTGGAGGAAATCGTGAGCCTTGACAGCTACGACAGTGAGGGTCCTCATACTCCAGAGACTGATGACTCAGCAGAGGGAAAAGGGAGGGCCATTAAGCCACCGAGTGAAGAAGATTTTCAGAGCATCAAACTGATCAGCAATGGAGCGTATGGTGCCGTCTACCTGGTGCGCCACAGAGAGACACGTCAGCGTTTTGCCATGAAGAAGATCAACAAGCAGAATCTGATCCTTAGGAACCAGATCCAGCAGGCGTTTGTAGAGAGAGACATCCTCACCTTCGCAGAGAACCCGTTCGTCGTCTCCATGTTCTGCTCCTTTGAAACTCGGAGACATCTGTGCATGGTCATGGAATATGTTGAGGGTGGCGACTGTGCCACTTTGTTGAAGAACATCGGGGCTCTGCCTGTGGAGCTGACAAGGATGTACTTTGCTGAGACAGTTTTAGCCCTGGAATACCTGCACAACTATGGCATCGTCCATAGAGACCTTAAACCTGACAATCTACTCATCACCTCCATGGGACACATTAAGCTTACAGACTTTGGCTTATCGAAGATGGGTCTAATGAGCCTCACCACCAACCTGTATGAGGGACACATTGAAAAAGATGCCAGAGAGTTCCTGGATAAGCAGGTGTGTGGTACTCCAGAGTATATCGCTCCAGAGGTTATTCTCCGTCAGGGCTATGGAAAGCCAGTGGATTGGTGGGCCATGGGCATCATCCTCTATGAATTCCTGGTGGGCTGTGTCCCTTTCTTTGGAGACACTCCGGAGGAGCTGTTTGGACAGGTCATCACagACGATATAGTTTGGCCAGATGGTGATGAAGCTTTGCCTGCGGATTCCCAGGACCTCATCTCTGCCCTGTTACAGACCAACCCTCTTGTGAGGTTGGGTACAGGCGGAGCGTTTGAGGTGAAGCAACACTCGTTCTTCACAGAGCTGGACTGGAACAGTTTGCTGAGACAGAAGGCAGAGTTCATCCCTCACCTGGAGTCAGAGGAGGACACCAGCTACTTTGATACCCGCTCGGATCGGTATCATCACATCAATACGTACGACGAGGATGACACCAATGACGATGAGCCTGTAGAGATCAGACAGTTCTCTTCCTGTTCTCCTCGATTCAGCAAGGTGTACAGCAGCATGGAGCATCTGTCTCAGCTGGAGCAGAAAGCCACGACCTCTGTATCCCGTCGGGAGCACAAGGGCCCACGGGAGGACAAGGTGACCAAGAGAGAAAGCCTAGGCAGCTTCAGCATGAGAGACAAGAGCTGGAGGACCGGATCCCCCGAAATGAAGCGCCTGTCTTGTTCAGAGTCCCTCCACATGGACGGGGATGGTAGCCCTCCTCTTGGTGCTCGTCGGCGCTTCTCAGCACTGATGGATACACATCGTTTTGCCTCACCCCTAGACGGTGAGCCAGACTTCCTGTCCCGCCAGGCGCCCATCAAGGTCCGTGGAACCTCACTGGATGGAACCAGTGTCCCCTCGCCAAGCCTCCTGGAGCAGAGAAACAGTCTGAAGGAGATCAACGGAGCAGACAAATCCCCTAGACATGGAGAGACACCAGGAGTAACCACGGCCATCGCCACATTATccccaggtcctgcagctgccgGACGTGACGTGATAACTCCTTTGTATGACCCTCTGGGGGCCCGGGCCACCAATGACCTGGTCCTCCGTAGGGCGCGCCATCAGCATTTGTCTGGGGATGGAGAGAAACGCAACTCCAGACCTGGAAACAAGGTCATTAAGTCTGCCTCTGCCACGGCCCTGTCTGTCATCATACCATCAGTGGAGCAGCATGGCGGCTTCTCTCCGCTGGCCAGCCCCATGTCCCCCCACTCTTTCTCCTCCAACCCCTCGTCACGTGACTCTTCACCCAGCAGAGACTTCTGCCCAGCGGTCAGCGTGCTGCGCTCTCCCATCACCATCCATCGCTCTGGAAAAAAGTACGGTTTTACTCTCAGGGCCATCAGGGTCTACATCGGAGACAGTGATGTCTACAGTGTCCATCATATTGTTTGGCATGTAGAGGACAGCGGCCCCGCCCAGGAAGCTGGCCTGTGTGCCGGTGACCTCATCACCCACGTCAACGGGGAGTCTGTCCACGGTCTGGTCCACACTGAAGTTGTAGAGCTCATCCTCAAGAGTGGAAACAAGGTGACAGTGACAACCACGCCTTTTGAGAACACCTCCATTAAAGTGGGTCCTGCCCGCAAGGCTGGCTACAAGTGTAAAATGGCCCGACGAAACAAGAGGACCATGGGCAAGGACAGCCAGGACAGTAAGAAGCGGAACTCCTTGTTCCGTAAGATCACAAAGCAGTCCAATCTGCTGCACACCAGCCGCAGCCTTTCCTCATTGAACCGCTCTCTGTCCTCCAGTGAGAGTCTTCCTGGCTCCCCAACTCACAGCTTGTCTGCCAGGTCCCCAACAAAGGGCTACCGCTCCACCCCTGAGCCCTCATACCTGGGTGCTTCCTCCCAGAGCAGCTCTCCAGCCTCCAGCACTCCAAACTCACCCGCTCCCGCTCAGCACATGAGGCCCAGCTCCCTGCACGGCCTCTCCCCTAAACTCCACCGCCAGTATCGCTCTGCCCGTTGTAAGTCTGCAGGTAACATCCCCCTATCCCCGCTCGCCCACACACCCTCCCCTACCCAGTCTTCGCCTCCACCACTGCCTGGCCACACCGTGGGGAGCTCCAACACCACCCAGTCCTTTCCTGTAAAGCTCCACTCCTCGCCGCCGGTAGTCCGCCCCAGGCCAAAGAGTGCTGAACCCCCGCGATCACCTCTTCTCAAAAGAGTGCAGTCAGCAGAGAAGCTAGGTTCGCCTCTGACCCAGTCCAGTTCTACAGGAGGGCTGGGGGGTCCGCTGAGAAAGCACAGCTTGGAGGTACAGCACTCTGAGTACCGTAAGGATGCCTTCCTCTGTGAGCTCGGGCTCCAGAGCCTGCTGGAGACAGAAGGGGAAAATTTGCCTCCTAATCCTCCACCTCTGCCCTCATCCTCTACAAACCCAGGGGCCGGTGTCCTGAAGCCTATGAGGAGACTAGGGAGGCAGGAGTCACCGCTTAGCAGGGAAACACTGCTGGctgggagggagagggaagagagggagagaggaagggaaagggagaaagagagggagactgATACCGGGACAGTCCTGGAGAGATTGAGTCGGGTTGGAGCAACAGTATCCCAGTCATCCTTATCAAGAAAACCTCATACAAGTGAGCTGTCCTTTAGCTCACAGGCTGGCCAGAGCTCTAGACTAAGTGCAGAAACCACTAAAACTACAACTTCTACTACACCTACCAAAACAACAGGAAGTCTAGGTGGTCTGAAGGGGCTTGAAAAGATCCCCCAGAGTCCGGCAGACTTAAATTCTAAACCGCAAGACCTCAAGGCAGCCAAAAGTGTGTTATCTAATAGTAGAGATCCCCAGGAGCAGCTATGGGGCAGAACTGAACCAAAGCAAGAAGGTGACAACAAGAGTAGGCCTGGTTTACCTGGTGCTGCCTTCACCAAGAGCTCTGCTTCTACTCCAGATAAATCCATCGGCATCAACGCAGCAGTGAAAGCCGGTCCTCTCAACATGAACAAAACCTTTAAACCATCAGGTATGGGGGACAGCCTGAGAAAAGCTGGTTCAGAGAGCAGTGACTCGAGGACTCCAGACTTCGGCTCTAAAAGCCCCAAACTCCCAGCTCGCGTTCTTGCTCCCGTCATTCCCCCACATGGGCAGCCGCTCTCGCTTGGCAAGGTGAGGCAAGGACTTGGGCCTGTCAACTGCTACCGGGGAACCCTTGACTGGGAGGATAAATGTCGCCTGGAGGTGGTGGAGGAGCATTCACCTTCCCCTTCTCCCTCCCCGACTTCTGTCACCCCCTCCCTCTGCGGACCTTCCCTCTGTAAGTCACGGCCTGTCTCCCCTGGCGACAAGACAAGCTTCGTCAGCCAGCTGACCACTGTGGCCAAAAATGTCCTTGGGCCAATCAAGCTTGGCTCTCAGGAGGGGTCCAAGAGCAAGGACCAGCAGACTAAGGCAGTggaggagagacagggaggcacAGCAGCAAAGTCTGACCCTCCTGCTGGAGGTCGAGTGATTGTTGGGTCTGCAGTGGTGACCCAAGGTCCTGCTGCTTCACCGCTAGAGAGGGCTGCAACAGGTAGCAACCAGTCGAAAATGTGACCCCATGAGAAATGGgactttagtaaaaaaaaaatgccttttttgGAAGAACAATGCGACATAAGTCAAGCActtaaaaataatgtacattccAGTTTCAGAGTATATcaaattttatttattgattccAATCATTGACTGATTCTAACTTTAAACCAGGAGTGAAATAATCGACTGTAAAGTTGCATTATCTGTTGATTTTCTAttataaagtatttaataaGAAGACTCTTAATGTAATGTGGAACACTTTatcatatgtatatgtgtgtgggtcTATGTGAACGCATGTCATAtggtatgtactgtacatgtattaTAGGTACAAGAAGGTCAAAAAGTGCTTTACGGATCAAAACATGCTGAAAACTGTGAATACCAAATCCAGTCACTCTGTTTTGTCTTTCAACCAGTCCTTTGTTGTTTTACTGCTTATCCAACAAGACGATGATAAACTGAGTCACAGTCAAATTGTAATATTTGCATaaaacaacacaactgatgcAGCCTCAGTTTGGCTACAGTGGGTAAGCAAGCAACAAGATGATTAAGCTAATTTCTTTTTCATCCAGCAGTTTACTGAATTGCTGTGCACGGTCAGACAAAGCCAAAGCAGGCACTCTGTCAGTGGATGTCACGTCAAGCACTGTCTAGCTCTGTCTGTCACaggggattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacgtaaaGCCACCTTGGGTCTATTTCTGGTGGTTCTTGAAGGCTGTGTCCACAGCAGAGGAAAGCGTTTGACAGAGCTCAGGCTCAGGGCTTATCTCCCCTTTGCAGGAGGGCTACCACAGCTCTTTTCTCCCTCTGCCTCCGACTGCAgccgacacacaaacacacgaacACACTCACATTGCCACAGGAGGCAGCATTGTCAGCAGCTGATTTTCATGCATTTAAATCCATACCCCCGTGGTCCATAAATTGGACGCGAGTATGTTTGCAAGTGAGTGAGTTAAGAAGTGTGGGAGTGTGGGAGAAAGTGCGTGTCTTTTCAAGGGGTAATTACACTCAGCATGGTTGACTCAGCAAAGGTTATGACCGAAACCGAACTGGAAATAAACAGGCAGCAGTTAGGATCCAGCAACAGTTACAGGCTTTGCTATCCGCTCTGCTACTTTATTAACAAATCACACTGGCTCAGTGAGgatatatatatggatatagtatatcaaaaagaATTGTTAAGCACATATACAGTGAACCCATGTGTTGTTTTGAGGCAAAACATGAAAAGCAGGCAGTCATGGATGTAGCATACCGTAATGTGTTTGTCAAAGGGCTCTATATCTAAGGTAGGGTTTATGGTATGGGCACGGTACAGTATATCACAATGAACctgttgctgtaaaaaaaacaaggttATCTGCAGTATAATCAGAATGACTGTGTTAGGTTGTTAGATACTAAAAGCTAGGTAGTCAAGGTTGATTTATGTAAAGCTCACATGTTGCTATGTGACATACTGATAGAGGTGTTTGAGTCAATCTCAGCAAGAGTGCTTAGAAGGACAAAATGTTCACAGGATAAACAAGTAGTGCTCTTCTTCCACTGGTCGTATTCATCTCATTAGTAGTTAATTATCAGTAACTATTCAGTGTACATAATCTTATGCAAATCATTTACAGCTGTGTGTGAGGACTGCTTTCACTATACTACTACTAGCTGATTTACGAAAGAAAGTATAGGAGTTAAAAGATTCAATCCATCTTTGATTTGATGCGTCAATTTCTGACAGTAATTTGATTTAAATGACCTTGATTCCTCTAAGCTTACATTTGTAAACTGATTCAACCAACAACAGCAACTTCACACAGAGGCAGAAGTTCAAAGACGGAAATTTATTTTCTAGTCCAAAAGGGTCTAAAAAGTCAGTTGGGGCAGGCTGGcaacattgttttggtttttatcTGTCTATGCAGAGCTACAAAGGGGGAAGCTGTTTTTTGTAGTATTGGCAGATCTTTttcaataatatataaaaaaaaaaatctttatgcatctttaatgcaatatatatttaaatatatttaaaaggaTAGCAATCAATCCTTCTAACAATGTTTGAAGGTAATAATGATGTTACGCCCCCCCATTAAGAAAGTCCCATGCACTACACGCATCaaccagtttttttattttttattcagcaTTGTACTCTACTGTCCTCCAGTGGTTCAAAACATCCACTGTTGAACTGGTTTCTATAAAATGTTCATCATTAATCTGCTGGAGTGAGCGTTTATGTAATGAAGCCAATACCACTAAAACACTGCAGAATGGATGTTGTTAGCCATAGGGTTACTGAATATGCATTTATGTTTCTGATGACAAAATATTTGCAGTAGTTGTCAAATGAACATCCTTTTCTGTTGTTGTGTTCTTCACGTGACTGTTAATTATATCTTCTGGAATAGGgattaacatttttaaaataatatactGTCTTATATATTCTACTGATAGGAGGGAGTTCTTTTATATCTTGATGTAATAAATGAGTTATCAGGTCAGCATTGTGCACCTGATTAAGAAAACTAACTGTAATGTAATCTTATACAGCTATTATGCCCACTTTCAGGCCTTTTCCCAATCAGTGGTGTCTATACTAGTGTTACATGTTTAagaatttcaattttctttttgtgatTGACAGAGAGTAGAATAAATGCACtttatttgaaaacaaaaaatcttCATTTGCTGGTATTGTTTGTAAGTTactttgaagaaaaagaaaatatactgtatacaaataTGGATTCTACAAATGAACACAGAAGTCCAAGTATAAAAACATTCCACATTTCTCTGTTCACTGAAAGTGTATTTATTTGTACCATGGGGCATTTTTATTTGTGATAGATGTGATTCAAATGCAGACACCTGAAGTGCAGTATGTGGAATAAAATTCTGAGATTTGTTCCAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640574.1 lncRNA downstream 187369 24096692 ~ 24099093 (-) True LOC120567450
TU9804 lncRNA downstream 202186 24082513 ~ 24084276 (-) True G7179
XR_005638833.1 lncRNA downstream 226618 24056501 ~ 24059844 (-) True LOC120556287
TU9760 lncRNA downstream 230702 24015459 ~ 24055760 (-) False G7141
TU9951 lncRNA upstream 117904 24445180 ~ 24449314 (-) True G7292
TU9993 lncRNA upstream 209104 24536380 ~ 24539504 (-) True G7324
TU9994 lncRNA upstream 212688 24539964 ~ 24541406 (-) True G7325
TU10016 lncRNA upstream 230202 24557478 ~ 24557697 (-) True G7343
TU10023 lncRNA upstream 258750 24586026 ~ 24586319 (-) True G7348
XM_039805258.1 mRNA downstream 673 24275916 ~ 24285789 (-) True atg4da
XM_039805205.1 mRNA downstream 12128 24245673 ~ 24274334 (-) False LOC120561874
XM_039805276.1 mRNA upstream 46088 24373364 ~ 24376889 (-) True rnaseh2a
XM_039805282.1 mRNA upstream 46088 24373364 ~ 24376865 (-) False rnaseh2a
XM_039805268.1 mRNA upstream 46088 24373364 ~ 24376744 (-) False rnaseh2a
XM_039805245.1 mRNA upstream 51844 24379120 ~ 24383311 (-) True LOC120561906
XM_039817000.1 mRNA upstream 71198 24398474 ~ 24409128 (-) True LOC120569117
TU9657 other downstream 475498 23774725 ~ 23810964 (-) False palm3
TU9658 other downstream 506138 23774725 ~ 23780324 (-) False palm3
TU9637 other downstream 517621 23752026 ~ 23768841 (-) True G7071
XR_005638947.1 other downstream 572376 23711827 ~ 23714086 (-) False LOC120557242
TU9627 other downstream 713413 23572705 ~ 23573049 (-) True G7065
TU9991 other upstream 204960 24532236 ~ 24535316 (-) True G7323
TU10046 other upstream 428656 24755932 ~ 24759600 (-) True LOC120543531
TU10312 other upstream 1370985 25698261 ~ 25699557 (-) True G7589
TU10328 other upstream 1456668 25783944 ~ 25788229 (-) True G7603
TU10486 other upstream 1674248 26001524 ~ 26003263 (-) True G7722

Expression Profile