RNA id: XM_039805339.1


Basic Information

Item Value
RNA id XM_039805339.1
length 2247
RNA type mRNA
GC content 0.48
exon number 2
gene id LOC120561952
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 23170807 ~ 23173617 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tttgcCCATTGACATATTTTGCCTCGAGAGTTGTAGTTGTAGCGCCCGCCaacaaaactaaagaagaagaagagtttgccataataataataattaaaaaaaaaaaaacaacagaagaagaagagaacacACTTTGGAGTGCCAGTAGCTACTGGCCcgagaattgattttaaaacattttatttcaactTTTCCAAAATGGCATCAAAACCTAGCAAAGAAGAACCCTTTGCATTAATCCTGGAAAGTGACGATGATGGGGAATCAGGAGCAGAGAGTTTTCTCACGGATGAAGAGATGGCTTATCAAGAGGGGTTTGACCCAGCTGAGGATTTTGACGATGAGCAACAGGAATCTGAAAAGCCTAGCACCTCGGCTGTAGGACAACAAGCCAGCCCCCCTGCTTCTTCAGAAAGAAAGCAGCCACCCCAGAATGGGAAAGATTGTGGACATGTGCAGCCTGAAGCAGAACCTCGTTCTCCACAACACCGCCGGATACTGGTACCCAGGTCCAGGTGTGCACGAGGTGTATCAAGAGACCAGTCCAGATCCAGATCTCCACTTCGGAGGCAGTCACAGCCACAGCCAGTACACTCAGTCACATCCTGGAAAACTGAGACGGACCCTGATGTATGTCCAGTGCCAAAAATGTTCATGCCAGCAAGACCCCCTGGACATCAACTGAACTCGGGCACCAAATACTCACCACTGGATCTTTTCAAACTGTTTTTTAGCAATAGCGCAGTTCAAACAATTTGtcaacacacaaataaacaagcTGCTAAAGACATTGCAAAAGGCAAAAGATATTCCTGGACTGACATCAACTGCCAGGAGTTTTTCAAGTATGTGGGACTGAATTTCTTCTTTGCTCTGGTGAAACTCGACAATATCCAGGATTACTGGAAAAAGAGCACCATTTTCAGCGTGCCGTTTCCAGCCAATGTGATGCCACGGGACAGGTACCGGATGATATCTTGGAACATCCACATGAGTGATCCTGAGAAAGATGTGGAGAATGACCAAAAGAAGGGGACACCAGATTATGACCCCCTGTTTCAACTGAAACCCCTTCTGGACACCATCAAAACTGCTTGCAAAGCATTTTACCACCCCAGACGGAACCTTTCAATTGACAAGAGGATGGTGGCTACAAAGGCCCATATTGGAACGACACAATACATAAAAGCGAAGCCGATCAAGTGGGGTTTTAAGCTCTTTGTGTTGGCTGACAGCAGCAATGGCTACACCTGGGACTTTGCTGTGTACACTGGGAAGTCCCAGTTGGCCTCAGGCGTTGGCCTTGCATATGACTCTGTCATGTCCCTGATGAAGACGGCATACCTGGGTAGTGGCTTTCATCTATATGTGGAtcatttctacaccagtccaaaACTCTTCAAGGAACTGTTGAGCCTGAATATTGGAGCATGTGGCACGTACAGAGACACCAGAAGAGAATGCCCCCGCACAAACTCAAATGCTCTGAAGAAAAGCGATCCCAGAGGCTCCATCAGGTGGATCCGTGACGGCCCACTACTTTTTGTGAAGTGGATGGACACACGTGAGGTCTCTGTCTGCTCCACAATCCACGAGGCATTCTCTGGAAGCACCCTGCATAAGAGGATGAAAACTAAGGATGGCAGCTGGACCACCAAATCTATTCCATGCCCAACACCTGTTGTGGAATATAACCGGCACATGGGAGGCGTTTATTTGTCTAACCAGCTGATCCAGTGCTACTCTGTACATCACAATAGCATGCGCTGGTACCGGACATTGTTTTTCCACTTCCTGGACATTGCAGCTACAAACAGCTTCCTCCTACACAAGGAgctctgcagagagaagcaggaGGAACCCATGACCCACAGAGCCTTTCTGCAGGAGCTGACAGCCCAGTTGTGCGGCGTCACAGTTGTGACCCCTCCAGCCCAGGCACACAGCGGCCACTTACCCGTGGCAATCTCAGAACAGACTGAATTAAGCAAGAGGGCCTCGTATGGGCGCAGGACCTGTGTACACTGCAGGAAGACCAAGCAGGTGAGGCAGTCTACCCCCTGGAAGTGCATGGAGTGTGACGTGGCCCTCTGCGTCATTGCAGACAGAAACTGCTTTCGGGACTGGCACAACTAACTTTTGTCTGAAATAATTGTAAAAAGCTTTTTGATCTGTGTTGGTTGCAGTGTTTATTCCCTCTTCACTATTGTCCTGTGTCATTTGAATAAACACGTGAGATTCAGTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU9409 lncRNA downstream 35032 23130518 ~ 23135775 (-) False LOC120556418
TU9411 lncRNA downstream 35032 23130518 ~ 23135775 (-) True LOC120556418
TU9408 lncRNA downstream 36493 23130518 ~ 23134314 (-) False LOC120556418
TU9410 lncRNA downstream 36493 23132890 ~ 23134314 (-) False LOC120556418
XR_005638858.1 lncRNA downstream 36624 23130454 ~ 23134183 (-) False LOC120556418
TU9441 lncRNA upstream 76578 23250195 ~ 23253876 (-) True G6947
TU9498 lncRNA upstream 234660 23408277 ~ 23409202 (-) True G6986
TU9506 lncRNA upstream 253895 23427512 ~ 23429145 (-) True G6993
TU9508 lncRNA upstream 334657 23508274 ~ 23508560 (-) True G6995
TU9616 lncRNA upstream 393143 23566760 ~ 23570673 (-) False LOC120555765
XM_039814978.1 mRNA downstream 172827 22993868 ~ 22997980 (-) True mchr1a
XM_039794020.1 mRNA downstream 336343 22785495 ~ 22834464 (-) True stx8
XM_039793817.1 mRNA downstream 449992 22692787 ~ 22720815 (-) False pik3r5
XM_039793753.1 mRNA downstream 449992 22692787 ~ 22720815 (-) True pik3r5
XM_039811136.1 mRNA downstream 487070 22667122 ~ 22683737 (-) False LOC120565362
XM_039782309.1 mRNA upstream 246663 23420280 ~ 23431271 (-) True LOC120546964
XM_039782118.1 mRNA upstream 257320 23430937 ~ 23438268 (-) False znf207b
XM_039782055.1 mRNA upstream 257320 23430937 ~ 23438267 (-) True znf207b
XM_039782181.1 mRNA upstream 257320 23430937 ~ 23438265 (-) False znf207b
XM_039782428.1 mRNA upstream 265214 23438831 ~ 23501859 (-) True rhbdl3
TU9396 other downstream 5870 23088500 ~ 23164937 (-) True G6924
TU9329 other downstream 182307 22981925 ~ 22988500 (-) True G6881
XR_005640901.1 other downstream 1131656 22039009 ~ 22039151 (-) True LOC120569580
TU8945 other downstream 1460995 21708540 ~ 21709812 (-) True G6592
unassigned_transcript_59 other downstream 1785964 21384771 ~ 21384843 (-) True trnar-ccg_1
TU9432 other upstream 40239 23213856 ~ 23242290 (-) True G6943
TU9627 other upstream 399088 23572705 ~ 23573049 (-) True G7065
XR_005638947.1 other upstream 538210 23711827 ~ 23714086 (-) False LOC120557242
TU9637 other upstream 578409 23752026 ~ 23768841 (-) True G7071
TU9657 other upstream 601108 23774725 ~ 23810964 (-) False palm3

Expression Profile