RNA id: XM_039805730.1


Basic Information

Item Value
RNA id XM_039805730.1
length 3344
RNA type mRNA
GC content 0.40
exon number 2
gene id npy2r
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 34516787 ~ 34521757 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATTGCTGTTGTCTTTTGAATAGCACAGGAAAGAGAAGAAGCATTACAAAAGCTTTTACGAAACTTTGCTGGAGGCAGAAACAATGAGAGGAATCTGAAAACATCTGCAGATGGAGAGTGACTTCTGGAGACTGTCCGCCATGGATTCAGCAGATCAACTCAACATGACTCAAGTGGAAGAATTCCAACTTGAACCTAAATCTTCCAACTGCTGCTCAACTACCGGCACAGTAAATGATGAGccctttttgaagctggatgaCAGCACAAAGCTGGTTGGAGTTCGAGTAAGTCTCATTCTTGCTTACAGCACAATCATATTGTTTGGAGTCATCGGAAACTCCTTAGTGATATACGTTGTCTGCAAGTTTAAACATCTACGGACTGTCAACAATTTCTTCATTGTAAACTTAGCTGTGGCAGACTTGCTGGTGAATGCGCTGTGTTTGCCTTTCACCCTTGTCAACACTCTGTATGGCGAGTGGAAGTTTGGTCAGGTGTTGTGCTTCATGCTGCCCTACTCTCAAGGCCTGGCCGTGCACGTGTCCACCATCACCATGAACGTCATCGCCGTGGACCGCCACAGGAGCATTGTCTACCACATGGAGACCAAGATGTCCAAAGACATGTGCGCTGTGGTCATTGTCATCACATGGGCTGTCAGCGCCCTTTTGGCCAGCCCGCTTGCCATCTTCAGGGAGTACGGGACGTTCGTCATACTACCACACCTGTCTATTCAGGTGTGTACGGAGCATTGGCCGGGAAGCAGCGCAAACGGAAGCATCTACAGTATATCAGTGCTTCTGGTTCAATGCGGTTTACCTCTGGCTATCAACTGCGTTGCATACATCAGCATCTGGAATAAGCTGAATAATCGTGTGGTTTACATAGGTCGAAATGACCGCCGTCTGCACAGGAAGAAGACCACTAAGATGCTGGTGACCATGGTTGTGGTTTTCGCTGTCAGCTGGTTGCCTTTACATGCATTCCAGTTGGCTGTTGACATTGACAGCACGTTGTTGTTTATGAAGGATTTCAAGCTGCTTTTCACGGTGTTCCACATTGTGGCAATGTGCTCGACGTTTGTCAATCCCATACTGTACGGGTGGATGAACAACAACTACAGGGTGGCCTTTTTGTCCGTGTGTAAGTGTTACCATCCCTTCAGTTCACAGTTAGGACACTCCAAAagcagagagacacaaaaaaaTGAAGACGGGGTTTGTACAGATTGCAAATCAACAAATGTCTAAGTTGCACATACAAAGAAGGTTCATTGGTAATCATTTGCAGAAATGCACGATTTGTATTTCGGTTTGTGTGGATATTTTCAGGGATGATGAAAACTACATATGGGTTGGAAGAAATTAttgaaatgtttgaaaaagGGCCTCAACTTTAAAGTGACTAAATTAAAACTGCGACAAAAGGGGGGTCATGCTAACTCTCATTCCAATCAATACTTGACAACTCACTCACAAGTATTATGAGTAAAACCATGATGGATATTCTTCTTTGTTGATGCAGTTTTTCTGTTTGGCTTGTTTCTCATTTTTCCAACAAGTCCGCGAAACCGTACGACCACATAGGTCAATTGTTCTCTGCCCTCTACTGCGACCCATAGGGCTTTTTTTCTGTCCTCATACCTAAAGGTAATGGTAGCTTTTTTAAACACTACATTGTGAAgtggtcgcagtttggttaagTTTGGGCACAAAAATTTGGTTAGGTTCAGGAAACAATTGTGACCTTAAGCATACACAGTATAATTTAGTCAAAATATCTCTATCAACCATTAAATCAGCTGTAAAAGGGGGACTAAATTATTTTACCTCATTCTCCACTTAAGTTGAATTCTGGAAATGATTGTTTTAAATATCCTTTTATATCTTATTATCTAAAAAGGTCAGCACTGTATTCAGAGTATACACTTAACTGCTGAAAACCATCACTGTGGGGAGAAAATACAACACAATAATCTGCTAACAATACaaaagataataattatttacaagaggacaaaacaaaacacccaCATAAGTCACCCATATACAGTTTAAACAATAATGGTGGTGGCTAATCCCGTTTCTGACATGAAAAGTTACTAACCTGTATGgtctatatatataatactaatTATGAGTATTTAGATTCCCCTCTAACCCTCATTTTCCAGGTTGATTTTGAAGCATCTAAAAACACATGACTATGCTGAAATTGTGACTATGATACCTGTCAATAATTGAAGATGATATCTTTTAAACGTCTTTCCAAAATTCATTGTAATAATTACTTAGCAACTTTCTGGCCTATTACTTTCATTTGGGCAAAATTAAGAGGAGAGCCTATTTAAATTGGTGCCCTTTTAAAGTCGCATCATCTGCAATCATATCAGTTATATAATCATATATGTTTCACAACTACAAAACCTCAGTGTTTGTCCCTTGTATGATGTACATGTTACAGTGTACATCTCTTGAGGTTGTTCTGTGCTATTCATGAGTAGCTCAACCTACCTGACATACTTGATTATGATATTGTTACCACCGCTAGTATCATATAAAGTcataacaacttttgaatgtattttcgatgtatatctatatctatatgtatatgaaCAATAAGAAGGCAGGGTTTTGTTTTTCATACTCGCGTTGTTGCTCCTTTTTAGAACAATTCATAACTGGAAAATGATGTCATAACTAGAGCATTTGTAGATATTTGGACATATTAATGTGCTGAGGAAACTTCATTTTGTCTATTGTCTATGATATGTTATATAAGTAAAATCTACAGCTGTTAACAATCAGGAATTTACTGctttcaaaaaaagaaaggtaAATCACGAACGTCCATAGAGGGACCAGACAGGGATGCCATCTTTCCTCTTTGCTGTTTGTACTGGCCCTGTAATCAAGTTATAGACATAATTCCTTTTTCAGAACAACCTGTGCTATCAAGATATATATGCTGCAGGGATGCCACATGAATGTATAAAGTGTTATATGAATATTAagacaaaaaactaaacagaaaatgttttcccaAATCTTGGCAATCAAGAGgggcaataaaaaaaacactaactagCACGAAGAGGTAGAGTGGCTTGTCCTCTGATCGCATGGTTGTCGGTTCCAAAACTCTGTCCACATGTGGGCAAGACAATGGTCCAGCAGTTTGCATGGTAGACTGCCGCTATTGGTGTATTAGAGTCGTGGGTGAATGAGAGGCATATTTGTGAAGTGCTGTATAAATGCAGTCCGTTTGCCATTTACTAAGACGTCATTTCTCTGGGTGGTGATggagtggatatgacacatgcctttggtgtgggagatc

Function

GO:

id name namespace
GO:0007218 neuropeptide signaling pathway biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004983 neuropeptide Y receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13121 lncRNA downstream 38337 34474172 ~ 34478450 (-) True G9747
TU13118 lncRNA downstream 48604 34462958 ~ 34468183 (-) True G9745
TU13102 lncRNA downstream 151509 34365016 ~ 34365278 (-) True G9732
TU13100 lncRNA downstream 161461 34355008 ~ 34355326 (-) True G9730
TU13050 lncRNA downstream 186822 34329717 ~ 34329965 (-) True G9695
TU13146 lncRNA upstream 8586 34530343 ~ 34532004 (-) True G9770
TU13256 lncRNA upstream 158784 34680541 ~ 34685004 (-) False G9836
TU13257 lncRNA upstream 160413 34682170 ~ 34685004 (-) True G9836
TU13259 lncRNA upstream 184101 34705858 ~ 34706062 (-) True G9838
TU13262 lncRNA upstream 201223 34722980 ~ 34723718 (-) True G9841
XM_039811009.1 mRNA downstream 105426 34405052 ~ 34411361 (-) False tlr3
XM_039810998.1 mRNA downstream 105427 34405052 ~ 34411360 (-) True tlr3
XM_039810220.1 mRNA downstream 115793 34390148 ~ 34400994 (-) True LOC120564947
XM_039799815.1 mRNA downstream 911655 33592642 ~ 33605132 (-) True frg1
XM_039812116.1 mRNA downstream 927746 33580853 ~ 33589041 (-) True asah1b
XM_039804103.1 mRNA upstream 5296 34527053 ~ 34529098 (-) True LOC120561135
XM_039798458.1 mRNA upstream 35216 34556973 ~ 34560875 (-) True LOC120557822
XM_039824665.1 mRNA upstream 119447 34641204 ~ 34664220 (-) False fam193a
XM_039824733.1 mRNA upstream 119447 34641204 ~ 34664220 (-) False fam193a
XM_039824635.1 mRNA upstream 119447 34641204 ~ 34664220 (-) True fam193a
TU13113 other downstream 59152 34452850 ~ 34457635 (-) True G9740
TU12854 other downstream 998664 33497160 ~ 33518123 (-) False stox2a
TU12774 other downstream 1232707 33283078 ~ 33284080 (-) True G9488
TU12680 other downstream 1381867 33092460 ~ 33134920 (-) False G9418
TU13477 other upstream 876883 35398640 ~ 35400474 (-) True G9997
XR_005640911.1 other upstream 955474 35477231 ~ 35477360 (-) True LOC120569607
TU13574 other upstream 1062713 35584470 ~ 35586582 (-) True LOC120572869
XR_005640401.1 other upstream 1422291 35944048 ~ 35969266 (-) False micall1a
XR_005640904.1 other upstream 1689371 36211128 ~ 36211215 (-) True LOC120569591

Expression Profile