RNA id: XM_039805913.1


Basic Information

Item Value
RNA id XM_039805913.1
length 3431
RNA type mRNA
GC content 0.51
exon number 19
gene id sec23b
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 16064549 ~ 16078343 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AACACGTCATTCTAGTAAAGTGCAGGAGCCGGCTGATGGAGTGATCCCCTCACCGACTGTCGTCTGTCTGTCCTGTACATCCGTCTGCTTTTATCTCCAAATGCTCTAATTTATTTTGAACATAGCAGTTCATTTCGCCCTTGTCTAAACCGGAGGACAACCTGATACACAGTACAAGCTCGGTGATGGCGACCTACCAGGAGTTTATCCAACAGAACGAGGACCGGGATGGGGTGAGATTCAGCTGGAACCTCTGGCCCTCCAGCCGCCTGGAAGCCACCAGGCTAGTGGTCCCAGTCTCCTGCCTCTTCACACCACTCAAGGAGAGGCCTGACCTGCCGCCGGTCCAGTACGAACCAGTCCTGTGCAGCCGGGCCAACTGCAAGGCAGTGCTCAACCCACTATGTCAAGTTGACTTCAGAGCAAAAATATGGGCGTGCAACTTCTGCTTTCAGAGAAACCCAttCCCTCCCTCTTATGCAGGCATATCCGAAGTGAACCAGCCAGCTGAACTCATGCCACAGTTTTCTACCATTGAGTACATAGTACAGCGTGGACCCACGCCCCCTTTGATCTTCCTTTATGTGGTGGACACGTGTTTGGAAGAAGAGGACCTCCAGGCCCTTAAGGAGTCCCTGCAGATGTCCCTTAGCCTGCTGCCGCCCAACGCCCTGGTGGGCCTCATCACCTTCGGACGCATGGTTCAGGTTCACGAGCTCAGCTGTGAGGGGATCGCCAAGAGCTACGTGTTCAGGGGCACCAAGGACCTCTCCTCCAAACAGATCCAGGAGATGCTGGGTTTAACAAAGGCAGCCGCATCAGGACAACAGGGTCGCCCACAGGCACCTCAGGATGCTGCAGCCTCTTGCAGGTTCCTTCAGCCCGTGCACAGAGTCGATATGAACTTGACTGACTTGCTGGGTGAGCTTCAGAGAGACCCGTGGCCTGTCCCTCAGGGCAAACGGCCCCTCCGCTCCACTGGTGTTGCACTGTCTGTTGCTGTTGGTCTGCTGGagGGTACTTTCCCCAACACAGGGGCTCGTGTGATGCTGTTCATCGGAGGGCCCCCCACCCAGGGCCCAGGCATGGTGGTGGGAGACGAGCTGAAAACCCCCATCCGCTCCTGGCATGACATCCAGAAAGACAACGCTCGCCATTTGAAGAAAGCCACCAAGTACTATGAAGCCATGGCCAACCGCTCAGCAGTAAATGGCCACTGTATCGATATCTACGCCTGTGCCCTGGACCAGACGGGACTGCTGGAGATGAAGTGCTTATCTAATCTCACCGGGGGGCACATTGTGATGGGAGACTCCTTCAACACCTCCCTGTTCAAGCAGACCTTCCAGAGAGTCTTCAGCAAAGACTACAACGGAGACTTCCGCATGGCCTTCGGCGGCGTCCTGGAGGTCAAGACATCACGGGAAGTGAAGGTTTGCGGGACCATTGGACCGTGTGTTTCACTCAACGCCAAGGGTTCCTGCGTTTCAGAGAATGAGATGGGTATCGGTGGCACGAGCCAGTGGAAAGTGTGCGGTATCAACCCCTCCACCACTTTGGCCCTTTATTTTGAAGTGGTGAATCAGcACAACGCACCAGTCCCCCAGGGTGGCCGAGGGGTGATCCAGTTTGTAACCCAGTACCAGCACTCCAACACACAGAGGAGGATACGGGTCACTACCATCGCCAGGAACTGGGCAGACGCACAGTCCCAAATCCAGCACATTGAGTCGTCATTCGACCAGGAGGCGTCCGCAGTGCTCATGGCTCGCCTGGGAGTCTTCAGAGCCGAGTCGGAGGAGGGGCCGGATGTCCTGCGATGGCTTGACAGGCAGCTCATCCGCCTGTGTCAGAAGTTCGGCCAGTTCAACAAAGATGATCCTACATCCTTCAAACTGTCCGAGTCTCTGTCCCTCTACCCACAGTTTATGTTCCACCTGCGGCGGTCGCCGTTCCTGCAGGTGTTCAACAACAGCCCCGATGAGTCGTCCTATTACAGACACCACTTTGTCAGGCAGGACCTGACCCAGTCCCTGATCATGATCCAGCCCATCCTCTACTCGTACTCCTTCCACGGGCCACCAGAGCCCGTTCTCCTGGACAGCAGCAGTATCCTGCCAGATCGAATCCTGCTGATGGACACTTTCTTCCAGCTGGTTATCTACCATGGAGAGACCATAGCCCAGTGGCGGAAGGCCGGCTACCAGGAAATGGCAGAGTACGAGAACTTCAAACAGCTGCTGCTGGCTCCACTGGATGACGCCCAGGAGATCCTACAGACTCGCTTCCCCATGCCGCGCTACATCGACACGGAGCACGGAGGCTCACAGGCTCGCTTCCTGCTCTCCAAGGTCAACCCCTCGCAGACCCACAACAACCTCTACGCCTGGGGACAGGAGACAGGGGCCCCGATCCTGACTGACGACGTCAGCCTGCAGGTCTTCATGGACCACTTGAAGAAACTGGCAGTTTCCAGCTCTGCGTAGACGACGCCTCTATTCCACCACAAAGAGAGAAGGAGTGATCTGACATTCCCGTTCTGACATAAGGATCCATTAACATTTCCCCTTAACAGGAACCAAACCCAGACAGTCTACTGTATGTGTCTTTTCTGGAGTCATGTGTGACATATCCATGCTACAAAATGAAcaggaaaaaaagggggggggggtagcaCATTCCTAATAAGAACACATTTCTACTCATTTTCATTAACATGCTATTTATGAGAAACGGCTTCAGTACTCCAGACTGTCCTCGTAAGCAATATCAAATCCTCTATTTCTCTTTTTATATTTGATATTACCTCTGAAACGCAGAATGATTAGACTAATtattcttgttttctttttgtttgtttgtcctaAAAATGTGTCTACTGCATCAGACTTAGTTGAAGACGCTGTTTGAATAGGCCTCTTTTATGTGTTTGCTTTGTCTATAGCTAAAGATGAAATGCCCAGAGTTTTCTCATTAATAAATTATAATGGTACTTCTGATGCTGATTTAAGAAATGTTCACAGGGCTAATCGGTCTTCACACTGATGACTTGTTAACCACAGTTTATTTGacatatacatttaaaatcCTACGTGGATTATACCTTTTTAAGCGTTTTCCAAGAAAATTCCCTCTGAATAATGAGGATTAATGTTCTGAGGAATGGAAGTCGATCACATCAAGTCAACCGAGAGTGACTCTGTTTTCAATGACGAACATTTCGCTTTATTTTAACTTGATAGGGCACTGTAGTTCAGTCCTCTCATCCCGTCTCATCACCATCTGGTATTTTGCACCCGATGATTGCCCAAGTGTCTTTGTAATCAAACTTTAATATACTTTAAGACTGTATAAAAGGGACAGTAGTTTGATTTAGATCCTGTCTGGATGCTTAACGCTATCCATATAAAGCCCTGTCGGCAGGAAAcaag

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport biological_process
GO:0048821 erythrocyte development biological_process
GO:0051216 cartilage development biological_process
GO:0048702 embryonic neurocranium morphogenesis biological_process
GO:0030127 COPII vesicle coat cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K14006 SEC23; protein transport protein SEC23

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6617 lncRNA downstream 14920 16049388 ~ 16049629 (-) True G4886
TU6610 lncRNA downstream 15669 16047844 ~ 16048880 (-) True G4881
TU6580 lncRNA downstream 70464 15993604 ~ 15994085 (-) True G4860
TU6529 lncRNA downstream 282796 15781397 ~ 15781753 (-) True G4815
TU6513 lncRNA downstream 328371 15735789 ~ 15736178 (-) True G4799
TU6646 lncRNA upstream 116931 16195274 ~ 16257571 (-) True G4915
XR_005639170.1 lncRNA upstream 233586 16311929 ~ 16315887 (-) True LOC120558721
TU6843 lncRNA upstream 246672 16325015 ~ 16325323 (-) True G5068
TU6844 lncRNA upstream 247178 16325521 ~ 16325846 (-) True G5069
XR_005639169.1 lncRNA upstream 267375 16345718 ~ 16346195 (-) False LOC120558720
XM_039804834.1 mRNA downstream 6196 16050764 ~ 16058353 (-) True LOC120561637
XM_039795602.1 mRNA downstream 29934 15994372 ~ 16034615 (-) True nomo
XM_039804658.1 mRNA downstream 165148 15816338 ~ 15899401 (-) True LOC120561525
XM_039803969.1 mRNA downstream 378910 15428356 ~ 15685639 (-) False sdk1a
XM_039803962.1 mRNA downstream 378910 15428356 ~ 15685639 (-) True sdk1a
XM_039813974.1 mRNA upstream 168061 16246404 ~ 16283686 (-) True LOC120567135
XM_039799790.1 mRNA upstream 274298 16352641 ~ 16356941 (-) True wfikkn1
XM_039799845.1 mRNA upstream 278720 16357063 ~ 16362428 (-) True LOC120558696
XM_039799777.1 mRNA upstream 286922 16365265 ~ 16381421 (-) True LOC120558661
XM_039799768.1 mRNA upstream 286922 16365265 ~ 16367912 (-) False LOC120558661
TU6504 other downstream 634993 15426544 ~ 15429556 (-) False sdk1a
TU6236 other downstream 1160340 14901150 ~ 14904209 (-) False ubl5
TU6167 other downstream 1345447 14712203 ~ 14719102 (-) True LOC120555938
TU5715 other downstream 2497283 13531753 ~ 13567266 (-) True G4168
TU5473 other downstream 3024315 13037280 ~ 13040234 (-) False LOC120560438
TU6856 other upstream 267427 16345770 ~ 16347922 (-) True LOC120558720
TU7590 other upstream 1632303 17710646 ~ 17713898 (-) True LOC120560175
TU7616 other upstream 1752349 17830692 ~ 17835761 (-) False epn3b
TU7631 other upstream 1765593 17843936 ~ 17845404 (-) False LOC120556682
TU7664 other upstream 1801525 17879868 ~ 17881759 (-) True LOC120556582

Expression Profile