RNA id: XM_039806397.1


Basic Information

Item Value
RNA id XM_039806397.1
length 2577
RNA type mRNA
GC content 0.41
exon number 10
gene id LOC120562596
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 28995088 ~ 29000920 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGCCTTTAAGAGGCTCACATTTAAACAAACATCTTGTGAGTTTGTGATATTGTTCTCTGAGTTTCACTCCAAATTGGAAGTGTTGTATCGTTTATTCTGAAGATGAAGTTTGAAAATGTGTTGGCAGAGGTGAATGGCTTTGGGAAATTTCAATTAAGGACAATCCTCTTGACTGTAATTCCTCGTGTGACTTTGCCTTTTCACTTTCTGCTGAATAATTTCATCGCCGTTATTCCATGCCACCACTGCAACATCAGCTCACTGGATGATGGAGGTGTTTTTAGGAATTTGTCGCAGGCAGAGAGGCTTGTTGTTAGTATTCCACTCCAGGCAGATGGGACTCCAAACTCCTGTCAGATGTTTGCAGAGCCTCAATATCATCTGCTGCTCAACTCATCCAACATGACTGACCTACCCACAGTGCCATGTCAGAATGGATGGGTATACGATAACAGCACCTTCAAGTCTTCACTGGCCACAGAGTGGGATCTGGTTTGTGATAAGAGAAGAGTTAACCGAGCCACGGCCACTATCTTCTTCGTGGGGGTCATGCTTGGAGCAGCAGTATTTGGCTATCTTAGTGACAGGTTTGGCAGGAAAATAACACTTCTTGTGTCCTATGTGACAACCACCTTCTTTGGATTTGCAAGCGCTTTCTCAAATAATTTCGCCATGTTTGCCGTCATGAGGTTCTTTACTGGATTTGGACTTTCTGGAATAAGCATTATCACCATAGTGCTTAGTATTGAATGGGTGGATATCAAGCATCGAACTGCAGTAGGTGTTTTAACAAGCATGGACTGGAGTGTTTGTACTGttctgctacctgttgtggccTATTTTGTGAATGACTGGAGGTACCTCACAGCCACAGCTACCACCCCGCTGTTTCTGGCAATGATCTGCTGGTGGTGGCTACCTGAGTCTGCCAGATGGCTGATAAGTAATGGAAAGGTCAACAGTGCTCATTTCTACTTGAGCAAGTGTGCAAAAGTCAACGGCAGAGAGCAGTCCATGGCTGACATAAAGCCTGAGACTCTGTCCAAAGTAATACTtatagaaaatgaaaacagaaaatattcctATTTGGACCTTGTGAGGACCCCCAAAATGAGGAGACTGGCTCTACTTACTGGAATTGTTTGGTTTGGAGTGGCCTGTACGTATTACGGAATCAGCTTGAATGTCAGTGGATTTGGTGTGAACATTTATCTCACACAGTTCATCTACGGCGCAATTGAACTTCCGGCAAAAGCATTTGTCTTTTTCACTTTGAACAAAATAGGCCGAAGGTTGTGTCAGACTGGAACACTCGTTATGACTGGACTGTGTATATTCTGCAACATGTTTGTCCCTCGAGATAACGCGATGTTTCAGACAACTGTGGGAGCTTTGGGCAAGATGTTCGCAGAAGCATCTTTTACAACTGTATTTCTGTACACAACAGAGCTTTACCCCACAGTAATGAGGCAAAATGGATTGGGTTACTGCTCCTTCATGGCCCGTGTAGGCGTGTCTGTTTCCCCTCTGATCATGCTTCTTGAAGAAGTGTGGGGCCATTTACCGAGTACTATCTTCTCCCTGGTGGCTGTTGCTGCAGGGCTGTCAGCTTCTCTTCTTCCTGAGACACAAAACATCCGTCTACCAGAGACTATTGAGGATGTGGAACACACAAGAAGAAgatcaatctccacctctgacgAGAAATCTCAACCCTAAATTTTTTCTTCACTGCAACCAAAAGGCATTTGGCCTTGAGTTGCAGGGCATATCAGTGGTggtaatatgttttaaataataaaagaagaaacaagTGTTTCTTAGATAACCACAACCTGTATAACATTTTTTCAATATAATATTTCAATAAATGTGTGAAATATTTTATAGTACCACTGATTAATGATTGATTTGTTTTGTACAGTGcgatttgttttgttgtttcgGGTATTTTTCTCTTACTTCCCAACAAACTGTCAGCTGCTTATGGTGCATTCATTCAATTGAAAATAAGATGTGAGTTAaaagatactttattgtcatcCATCTGTGTAAAGTGCAGTAAAGTTCATAGAGGAACAAAATTGTGTTTCTCTTGGTCCATAACAAAAAGATAAATGATGCAACATTCATTGAAAGTGAAGCAAACATTTAGACTACACTTAAGGCACAAACATGTAGTGCAATAACAgacaaataaatataagtagTGTAAGCATAAAGTGAGGTAGAGCAGTAGTAACATTAAAAGCAGTTTGTGAAGATATTTATGTATGCAtgattgtacagtatgttgtaaGGTACAAGTAGTCAGACAGTCCAGTATAGTGAGGTAGGGTATGACAGGTTCAAGTTTTCATCCACGTAGTGCTTAGTGGTCACCTAAGTGCCCATAAATTCATCCATCTTGCCAAGATAGCATTCACTGTTTTATCTGGTATATATCATTAATTCATCCATGAATTGCCTAGTGTTGTACTCATCTATTCATGCCTCATTGCAATCATTCATTTATTCCTATCCTCATTAATTATGTGTGTATCATTAGTAGGTAAATAAACATTTGATTGATAAAG

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K08204 SLC22A7, OAT2; MFS transporter, OCT family, solute carrier family 22 (organic anion transporter), member 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11432 lncRNA downstream 79269 28915567 ~ 28915819 (-) True G8438
TU11402 lncRNA downstream 136017 28820304 ~ 28859071 (-) True G8417
TU11354 lncRNA downstream 182869 28809429 ~ 28812219 (-) False LOC120562398
TU11356 lncRNA downstream 183176 28809429 ~ 28811912 (-) True LOC120562398
XR_005639773.1 lncRNA downstream 183300 28809425 ~ 28811788 (-) False LOC120562398
TU11494 lncRNA upstream 11506 29012425 ~ 29016986 (-) True G8486
XR_005639809.1 lncRNA upstream 96990 29097909 ~ 29102324 (-) True LOC120562689
TU11600 lncRNA upstream 220293 29221212 ~ 29221640 (-) True G8572
TU11603 lncRNA upstream 240693 29241612 ~ 29241838 (-) True G8575
TU11610 lncRNA upstream 281913 29282832 ~ 29283044 (-) True G8582
XM_039806364.1 mRNA downstream 1150 28989216 ~ 28993938 (-) True LOC120562580
XM_039806373.1 mRNA downstream 1150 28989939 ~ 28993938 (-) False LOC120562580
XM_039806386.1 mRNA downstream 15360 28977373 ~ 28979728 (-) True LOC120562590
XM_039806292.1 mRNA downstream 45765 28940561 ~ 28949323 (-) True LOC120562550
XM_039806239.1 mRNA downstream 109910 28879021 ~ 28885178 (-) True rps6
XM_039806416.1 mRNA upstream 2350 29003269 ~ 29007156 (-) True LOC120562611
XM_039806486.1 mRNA upstream 51341 29052260 ~ 29054086 (-) True fabp2
XM_039806519.1 mRNA upstream 66353 29067272 ~ 29083007 (-) True gucy1b1
XM_039806500.1 mRNA upstream 83009 29083928 ~ 29093918 (-) True gucy1a1
XM_039806507.1 mRNA upstream 83009 29083928 ~ 29093558 (-) False gucy1a1
TU10756 other downstream 2416283 26567067 ~ 26578805 (-) True smim14
TU10758 other downstream 2416283 26567614 ~ 26578805 (-) False smim14
TU10760 other downstream 2416283 26567614 ~ 26578805 (-) False smim14
TU10761 other downstream 2416283 26567614 ~ 26578805 (-) False smim14
TU10744 other downstream 2459352 26533852 ~ 26535736 (-) False LOC120566984
TU11635 other upstream 305102 29306021 ~ 29339824 (-) False rnf24
TU11633 other upstream 305129 29306048 ~ 29339824 (-) True rnf24
TU11778 other upstream 588389 29589308 ~ 29593623 (-) True G8701
TU12128 other upstream 1970469 30971388 ~ 30974612 (-) True G8975
TU12451 other upstream 2938802 31939721 ~ 31948554 (-) False znf827

Expression Profile