RNA id: XM_039806705.1


Basic Information

Item Value
RNA id XM_039806705.1
length 1046
RNA type mRNA
GC content 0.52
exon number 5
gene id cldnd1b
representative False

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 29222264 ~ 29230841 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTAGTGCGCCGAACCACCGTCAAAaatcaaaaggaagaagaaaaccTATCAACATAGAAGAAGAGGGCGGAGGCCTGCTTGAAATCCAAggagcagaaaaaaataacGCTAATATTGAGAAGTTTTGTCCATCGATGAGAAAGCAGTTCCTTCTTGTAAACACAACCTCAAATCAAGCTGTCTTCATCTAGACCATGGTAGACAATCGCTATGCCACAGCTCTGGTCATCGGCTCGGTGCTGAGCCTGCTGGCGACAGTGTATCTCTCCGTGGCTGTGGGGACGCAGCACTGGTACCAGTACAGCTGTCCACCAGTCAAACATGAGGGGAGCAACGCCTCCAAGCTCGAGTTCCTCTATGGAGAGTTTGATGAGAAGACTTGCAGTGAAACCATGTTCCGCCTGAACGGCACCCTGGGATTGTGGTGGAGGTGCATCCTGGTGCCCAGCCAGCCCTACTGGTTCAAAGCGCCAGAGCCGAAGATGGAGACGCAGTGTGTGAGCTTCACTCTTCCTCAGCAGTTTAGTCCAAAGTACAAATACCCTAGAATCCATAACAACGAAGAGGATCTGCTGAGAACATACTTGTGGAGGTGCCAGTTTCTCCTACCCTTGGTGTCTCTGGCTTTGGTGTTCCTCGGTGGCCTTGTTGGGGTCTGCGCCTGCCTGTGCCGAAGCTTCACCCCCACCTTGGGTGTGGGAGTGCTCCATCTACTCGCAGGTCTTTGCACTCTGGGCACCGTCTGCTGTTTCCTGGCCGGTGTGGATTTGCTCCAACAGTATTTGCCACCACCAGAAGGGGTGGAGGGCTCGCTGGGCTGGTCCCTCTACCTCGCCCTTATCTCCTTTCCTCTGCAGATGATGGCAGCTGCTTTGTTCCTGTGGGCGGCCAGGAGTCACCGCAAAAACTACACCCGCATGACTGCTTACAGGGTAGCCTAAAGAGAGACTACTACGACAACTTCCCTCAAAACAGCTCAAAACAGCCTACTGGTCTGAggactttctttaaaaaaaaaaatctggtctTATTTCTGGTTAAGGACT

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11600 lncRNA downstream 624 29221212 ~ 29221640 (-) True G8572
XR_005639809.1 lncRNA downstream 119940 29097909 ~ 29102324 (-) True LOC120562689
TU11494 lncRNA downstream 205278 29012425 ~ 29016986 (-) True G8486
TU11432 lncRNA downstream 306445 28915567 ~ 28915819 (-) True G8438
TU11402 lncRNA downstream 363193 28820304 ~ 28859071 (-) True G8417
TU11603 lncRNA upstream 10771 29241612 ~ 29241838 (-) True G8575
TU11610 lncRNA upstream 51991 29282832 ~ 29283044 (-) True G8582
TU11613 lncRNA upstream 59459 29290300 ~ 29290813 (-) True G8584
TU11646 lncRNA upstream 133625 29364466 ~ 29366481 (-) True G8609
TU11647 lncRNA upstream 139760 29370601 ~ 29371339 (-) True G8610
XM_039806648.1 mRNA downstream 15556 29199407 ~ 29206708 (-) True tacr3l
XM_039806638.1 mRNA downstream 27360 29182061 ~ 29194904 (-) False primpol
XM_039806619.1 mRNA downstream 27360 29182061 ~ 29194904 (-) True primpol
XM_039806629.1 mRNA downstream 27451 29182061 ~ 29194813 (-) False primpol
XM_039806572.1 mRNA downstream 70822 29149523 ~ 29151442 (-) True helt
XM_039814935.1 mRNA upstream 587 29231428 ~ 29240352 (-) True glb1
XM_039798227.1 mRNA upstream 78849 29309690 ~ 29339847 (-) False rnf24
XM_039798236.1 mRNA upstream 78849 29309690 ~ 29330453 (-) False rnf24
XM_039798219.1 mRNA upstream 78849 29309690 ~ 29329733 (-) False rnf24
XM_039798238.1 mRNA upstream 81377 29312218 ~ 29329850 (-) False rnf24
TU10756 other downstream 2643459 26567067 ~ 26578805 (-) True smim14
TU10758 other downstream 2643459 26567614 ~ 26578805 (-) False smim14
TU10760 other downstream 2643459 26567614 ~ 26578805 (-) False smim14
TU10761 other downstream 2643459 26567614 ~ 26578805 (-) False smim14
TU10744 other downstream 2686528 26533852 ~ 26535736 (-) False LOC120566984
TU11635 other upstream 75180 29306021 ~ 29339824 (-) False rnf24
TU11633 other upstream 75207 29306048 ~ 29339824 (-) True rnf24
TU11778 other upstream 358467 29589308 ~ 29593623 (-) True G8701
TU12128 other upstream 1740547 30971388 ~ 30974612 (-) True G8975
TU12451 other upstream 2708880 31939721 ~ 31948554 (-) False znf827

Expression Profile