RNA id: XM_039807351.1


Basic Information

Item Value
RNA id XM_039807351.1
length 4321
RNA type mRNA
GC content 0.48
exon number 2
gene id nfil3-5
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 35815772 ~ 35825168 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agagagagactctcgcGCGAGAGAGATAGAGGACAAAAACGTGACGAAGCAGCCGAAGAGCTGTTATGCAACCGCTGACCTACTAACACATATTTCTAGAAAGGGAGCCAGAGAAACTGGAGCAAAGTGTGCGgcagcacacaacacacaggcaGACCGAGccaagagacagagaaacagcatCCATCCGACCCACTGACTCAACCACAACTGTCCCGAGCACCGAAAGCAGGAGAAGAAAACTTTTcgggttttttttgttggggaGGTTTCTTCTAAAGGGCACAAGGAAAGGAGGAAACGGGAGCGAGACAGCTTTTGTGTCGGGGGAAGcctgaatcttttttttcccctccctcctccaggACATGAAAAGtTAGTTGTCAGCAAACAGCAGCACTGAAGCCGGATCCTCAGGGAGCCCCCAGAGTAGACGGACTGACCTACACCCTCTCTAAGACACTAAAAGAAGCAGTGCAGCAGCCTGACAGGCATCAAAACTCTGCTGAAGACTGGGGAAGAAGCTGATAAACTCAAAATCACCTCCAACAAGACAGCTGGAGGACTCTTtgctgaaaaaaatacaaacgtgtttctttttttaggtTCAGAACACTAGTTCAATGTCTGAGGTTTTTGGGGAGTTCCACCTTTTTCTAATCTTCTTGGCTAATATGGACACTTGAATGTTTTGATCgtgaaaaataacaaaaggaaATCAATGAGGCTACCCCTTCAAGGAGCACAAATACCTCATCAAGAAGTTTTTGCCGATCCTGCGACTTTGAATCTGCTTAACAACAAAGCAGAAAGCTCATATAGTTTTAAATTTTTCCCTTCTCCCCTTTGCCCTTTGCTAGAGTTACACTCTGGCCCCCAGCTGGGACAAAATGGAAAGTCTAAGTCTACACCTCCCGAACACCAGCAACAAAAATGCCATGGAGGTCGACACGTTTTCCTCCTACAGTGGCAGCATCCCATCCCCTACTCCTGGAAGTGGAGAACGCATCAGCCGCCAGTCTAAAGGTTCCAAGGCTAGTGCGAGCTGCCGTCGCAAGCGAGAGTTTATTTCCGATGAGAAGAAAGATGCTTCCTATTGGGAAAAACGGAGGAAGAACAATGAAGCAGCCAAGCGCTCAAGGGAAAAGCGTCGCCTCAATGACATGGTGCTAGAGAACCGGGTCATGGCACTGAATGAGGAGAACGTACGTGTGAAAACGGAGCTTCTTCAGCTCAAGTTGCGCTTTGGCCTCATCAGCACAGCCTCCTACATGGAGAAAAGTCAGCAGATCTCCAACAGCGCTGCTGGTGGCAACAGTAGTAGTGGGAGCAGCAATGGCACCTCAAATGGTAACGCCTACCTCTCAAGCAGCGGCTACTCCAGTGCATCCCAGGTGATGCTGAATTCGGACTCTTCTGAAACTGAGCAGTCGAGCCGTGGCGAGCGCCACAACCTGCTCCACCAGTACTCTCCCCGGGGCTCCTTCTCCGACATGTCTGATGGCTCCTCCAGAGACAGCCCGGAACCCATGGGCTACAAAATAAAGACCGAGCCCTCAAGTATGGAGATGGCCGGACTGGAAAGCAACAGGATGCCCAATGGTATGCCGAGTGGGGCTTACCATGGCAGCCACACTGCTCTGGTTTCTCCTCACCAGCAGAACGACCCATTGGCTGAAAGTGCCATGGACTACCAGCAccaccaacagcagcagcagcagcagccgcagtGCCACATGGAGGCCTCCAGTCCCGCTCCTCAGGCCACATCTGCACAGAGGAGCGTCATCTTGTACCGCTCCAGCAGCGGCTGTTACCCCATGGAGACCCAGAGGCCGGAGGACCAGCAGTCCCAGCAGAACAGACCACTACAGCATGGCCAGCACTCCTTAACCTCCAAGTTCTCTGACGGCTCAGTGACCATCACAGAGGTTTCTGAGAAACTAGAGAGGACAAAGACAATGGACTCGCCTCAGTACGAATACACTAATGGTTATGCTGAGTCgacagaggagctgcagcaaaggTACAATCCCAATGCCCAACAACAGCGTGAGAGCCATCATGGACACTGCAGCTACCAGGGTCAGGAGAGTAGTCCTCAGAACCCCTTTGCCCCTAATCTGATCCACAACACTGAGGAGGGCAAGTCCTCCTTCCCACAGCACAACGGCTACCTCAACACACTGGACGAAGAGCCCCCGGTGCTCACCTACGAGGGAGGCCCCGGAGCTGGCGGTTTGTACCAGGAGAACTCCTCTGCTAAAGACACCTCATCCAGTGACGGGGAGCCCCGTAGCTCGGACAAGGAGGGCTCCACAGACGACGAGTCcccctcctcgtcctcctcagACATTAGCAGCTACCACCAGAAGGCGGTGGGAGCTTCCGGCTCGAATGGCGAGTTCCAAGCCGAGGTCAAAGCCACTGCCCTGCCCCACAAGCTCCGCCTCAAGTACAGAGCTCTGTCCAACGGGGCAGCAGCAGGGCAGATGGAGGGAACAGTCAACACCTCCATGTCCCCCTCTCCCACTCTGCCTCAGCACCCTTACTTAGCTCTACCCAGCAACCCTAACGGCACCCAGGCCAACAGGGAGAGCAAAGAGGCGGACAATGAGATTGAGTATGCGCAAGAGGTCAATCCTTTGAATGAGAGTGCGGACGCTAAAGACGAGGTAGGGAGAAAGGGATCCAGCAGCAGCTGGACTGGGCACAATAAGAGGCGAGATTAGGGACAAACTTTCCTGTCacctctctgtcatcttcagCAGACATTTACAGACAACACAACTATGACTCACATCGGCACCGTAACAAGGCAGAGAAGAAGCCGGTGATCTGTGCGAGGTGCAGTTAGGATGGGATTTCACCAAGTTCCACTGTGTCACCTGATCCTCTTTCCTTTGCTCTCTCCTACCTCCCATCTATCCCTCCAATTAAAATGATAGATCACTTAATGAGGAAGAGGACAGAATGAAACTCTCCAGAAACATTATTCAATTATTCATTATTGTAAACTGCCTTGGTGGCTGGCCAGCATTTTTATTGTGGCATTATGGTAACATTCCTTTGACCAAAGAATACACATCCTTCCTTTAGTGTCTCCCTTTTTGGCATCAAGAGTTACATTCTTCCTCCCTCTGATCACACATGTCCCATTTGATCACCCACTCTCTTACCATCTGTACACACCCCAAGTCCCCTTCACTTCTGAAGCACTTAGATTGTATATTACTGTGACATATAAATTTGCATATAtggaatatatattttaagaagaaaaatgtggtgaaaacaaaaaaaaattaaagcagTGGGTTGCGGAAGTCGTAGACTTAAAAGTGATCGTTTTTCTCTCGTTGTTATACTTTGTACAGTCGCTCTTTGTCTAGAAAACGTCTCAAAGATTTTCTTTGAACTAAAAGAACGGGCCACAACTtagttgggaaaaaaaacaagaaaggtACACTTTTTCCAGATTTATGGATGAGATCGGGGGTCTCATTCAGGTGATCTGAGCTCTTTGACACTCAAAGCTGTCAAAACAGTCACGGCCAGTTATCCGCATATCAGTCAAGGCTATGCAGTCACACATTGCTGTTTGCAAAACCTGACAAGCACAAGGCAGGCCTCGCCTGCCAGCCCTTCAGCGTAAATCAATACAGCTACATTTCCAGACAAATATTGCTTGTCTAATAAATGAAATTTCGACTCTCCAGTCGCAAACAAGCAAAGCTGCTCTCtcttcataaggtgcctctttATTGTGTTGTCCCTCGTCCCCACTTTGGCCAATGTCTTAACGGTCCCACTCACCTCTGCACTGAGTTGTTTTAGCTGCAGTAGCTCATACAGTCTGTACAAGTTTAACTGTTTCACTCCCCGGTGCCTGCCTCTGGCCACTATGTATAAATGTAAAgttgtctctctatctcttgtATACTGCTgtcattgttttattattattttattaatattgttaTTTTCTATTATATTTGGTTATTATTTTGGCTATTATTATGTGCATATTTCTGTCATCTTGTTGTGTCATTTTGCTCTATGCTCTTCCTGGTTGTGCTGTGTATTTACCCATGCTGCCCTTTGCCCCAGTTTCCATTTGTACTCTGTCTTACCGTATAACCTTGTTGTTTGCCGAAAGgcttttctgaaaatgaaagaaaaaaaaattgaataaggCTTGTCCAGAAGTGGTTATGTATTGCTATACTTCACGTGGGTATGCAAAATGGttacaaaaacacttttttttttattgtgaaagaatgaaaatggagaaaaaaataaaaggttgtTACATTTA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13682 lncRNA downstream 113180 35698632 ~ 35702592 (-) True G10143
TU13606 lncRNA downstream 163601 35651972 ~ 35652171 (-) True G10091
TU13562 lncRNA downstream 242328 35562913 ~ 35573444 (-) True G10063
TU13750 lncRNA upstream 95687 35920855 ~ 35921076 (-) True G10198
TU13752 lncRNA upstream 103581 35928749 ~ 35929260 (-) True G10200
TU13754 lncRNA upstream 106431 35931599 ~ 35931855 (-) True G10202
TU13960 lncRNA upstream 336848 36162016 ~ 36166879 (-) False G10349
TU13961 lncRNA upstream 336848 36162016 ~ 36166879 (-) True G10349
XM_039809084.1 mRNA downstream 76102 35732968 ~ 35739670 (-) False LOC120564231
XM_039809074.1 mRNA downstream 76102 35732968 ~ 35739670 (-) True LOC120564231
XM_039795211.1 mRNA downstream 124744 35688489 ~ 35691028 (-) False LOC120555967
XM_039795205.1 mRNA downstream 124744 35688489 ~ 35691028 (-) True LOC120555967
XM_039796360.1 mRNA downstream 186880 35623904 ~ 35628892 (-) True prdx2
XM_039807405.1 mRNA upstream 3587 35828755 ~ 35831299 (-) True LOC120563277
XM_039807489.1 mRNA upstream 3587 35828755 ~ 35831289 (-) False LOC120563277
XM_039807596.1 mRNA upstream 19119 35844287 ~ 35848461 (-) True klf1
XM_039812943.1 mRNA upstream 119962 35945130 ~ 35969266 (-) False micall1a
XM_039812818.1 mRNA upstream 119962 35945130 ~ 35969266 (-) True micall1a
TU13574 other downstream 229190 35584470 ~ 35586582 (-) True LOC120572869
XR_005640911.1 other downstream 338412 35477231 ~ 35477360 (-) True LOC120569607
TU13477 other downstream 415298 35398640 ~ 35400474 (-) True G9997
TU13113 other downstream 1358137 34452850 ~ 34457635 (-) True G9740
TU12854 other downstream 2297649 33497160 ~ 33518123 (-) False stox2a
XR_005640401.1 other upstream 118880 35944048 ~ 35969266 (-) False micall1a
XR_005640904.1 other upstream 385960 36211128 ~ 36211215 (-) True LOC120569591
XR_005640910.1 other upstream 387378 36212546 ~ 36212627 (-) True LOC120569604
TU13981 other upstream 409615 36234783 ~ 36243319 (-) False slc5a10
XR_005640907.1 other upstream 456839 36282007 ~ 36282095 (-) True LOC120569597

Expression Profile