RNA id: XM_039807399.1


Basic Information

Item Value
RNA id XM_039807399.1
length 1071
RNA type mRNA
GC content 0.49
exon number 5
gene id LOC120563312
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 7777862 ~ 7784253 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACACAGAGCTGCAAACTTCCATCAACTACGAAAGGTTATCCTCTACTTGGAACAACGTTTGAACCAAACCGTTGACATGAAGTTTGGGTTGCTGGTGGTATTGGCGGTGGCCGTTCTGGTGCCCAGCCTGTCCGAGGGCCGGATCGTCTCCAGATGCGAGCTGAGAGAAAAGCTCGGGCACGCGATCACGCTGCCCCCACGTCTTAAAAAGTTCAAGCAACAATACCTGGCAATAGTTATCTGTGAGGTGAACAGCCGGTCCCATCTCAACACCGGCCTGGTCAAGGTGTTCGGCAAACGCAGAACTACAACCACAGCCACGCCAACGACTCCGgtcacaacacaaccaaataccaCCCAAACAACTACCACCCAATCAACAACTAGAAAACCGACAACCACCCAACCGACTACCACTGCTCCAACGACCACTCAACCAATCCCAACAGGTGCCACAAAAGCAACCCTAGGCACAAACGGAACCAGAGCTTGCATCCACAGAAGAAAGCGCGAGGCAATCAGCGAGGAGTCTGACTCGGCAGAGATGGACTCGGGGCTGGAGGAACTGCTGAACTGGCGCAACGAGACGGCAGATGAAGACGAGTCTGAGGAAGACGAGGCTGAGGAAGCTGGGGAACGTAAGAAGCGATCCAGTGAGGAGACCAAGCAGTCGTCTCTCGGCCTTTACGGGATCTTCCAGCTGTCTGATGAGACCTTCTGTAATTCCGGTTATCGCTCCTCCAAAAACAAGTGCAACACATCCTGCAATGCCTTCATTGATGACAAAATTACGGACGACATTAATTGCTTTGTGAAGACTGATCAGTGGAGGTATAGTTTGTCTTCCGCCTCGAGCGAGTGCAAATATAACACCAAGCACTTCTTCGACAAATGTTAAAAAGAAGCTGACACGTTCTCCACCTGCTACTGAAGCTCACACCAACAATCATTTCTTCTACCTTCaatgtgacctttgaccctcaTGGTTTCATCTCAAACATTGTGGAGCATGTCacagtttttcattttaattaaccAGTGAGATTTctttaataaagttattttgttTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639929.1 lncRNA upstream 2936 7770713 ~ 7774926 (+) True LOC120563307
TU3525 lncRNA upstream 117767 7659400 ~ 7660095 (+) True G2524
TU3524 lncRNA upstream 118839 7658404 ~ 7659023 (+) True G2523
TU3510 lncRNA upstream 174271 7602033 ~ 7603591 (+) True G2512
TU3497 lncRNA upstream 186786 7588643 ~ 7591076 (+) True G2505
TU3558 lncRNA downstream 129499 7913752 ~ 7917581 (+) True G2545
TU3578 lncRNA downstream 179004 7963257 ~ 7965276 (+) True G2561
TU3580 lncRNA downstream 186536 7970789 ~ 7971223 (+) True G2563
TU3579 lncRNA downstream 190020 7974273 ~ 7975034 (+) True G2562
TU3581 lncRNA downstream 191416 7975669 ~ 7975881 (+) True G2564
XM_039807384.1 mRNA upstream 12471 7757686 ~ 7765391 (+) True LOC120563293
XM_039807381.1 mRNA upstream 33868 7718956 ~ 7743994 (+) True LOC120563246
XM_039807383.1 mRNA upstream 33868 7740391 ~ 7743994 (+) False LOC120563246
XM_039807380.1 mRNA upstream 51326 7718956 ~ 7726536 (+) False LOC120563246
XM_039807382.1 mRNA upstream 51326 7718956 ~ 7726536 (+) False LOC120563246
XM_039810774.1 mRNA downstream 16924 7801177 ~ 7803946 (+) True LOC120565219
XM_039807413.1 mRNA downstream 26521 7810774 ~ 7817275 (+) True LOC120563316
XM_039810834.1 mRNA downstream 43336 7827589 ~ 7833507 (+) True LOC120565228
XM_039805410.1 mRNA downstream 81999 7866252 ~ 7873600 (+) True LOC120562006
XM_039810942.1 mRNA downstream 91749 7876002 ~ 7888374 (+) True LOC120565283
TU3532 other upstream 78322 7699265 ~ 7699540 (+) True G2530
unassigned_transcript_51 other upstream 564306 7213485 ~ 7213556 (+) True trnae-uuc_49
unassigned_transcript_50 other upstream 564828 7212963 ~ 7213034 (+) True trnae-uuc_48
unassigned_transcript_49 other upstream 565857 7211934 ~ 7212005 (+) True trnae-uuc_47
unassigned_transcript_48 other upstream 568420 7209371 ~ 7209442 (+) True trnae-uuc_46
TU3574 other downstream 157294 7941547 ~ 7948253 (+) True G2557
TU3609 other downstream 305560 8089813 ~ 8091505 (+) True G2590
TU3639 other downstream 625604 8409857 ~ 8410935 (+) False LOC120565323
TU4189 other downstream 1107195 8891448 ~ 8893493 (+) False zbtb45
TU4342 other downstream 1687847 9472100 ~ 9527214 (+) False G3091

Expression Profile