RNA id: XM_039807726.1


Basic Information

Item Value
RNA id XM_039807726.1
length 3595
RNA type mRNA
GC content 0.58
exon number 18
gene id LOC120563519
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 4827103 ~ 4850574 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCCCTTTCCTTTTTTGTGCTCcgcagtgctgctgctgtgtgagcTGACAAACCGCTGGGAGCTGCAGGAAGCGCCTTTACTTTTTACACTTCTCTCAactcttctttttcctcttcatctccttctttctccccctatcttcttcctccttttctctctctctctctccccctgtctgtgtttgtctccatGCGGGTCTCTGCCCCGCACCGACGCAAACAAACAGCGGGCCTTCCTGTAGCCGCCGCCCCGGCCTCCCTCGCCCTGCGGCCGGCGGAGCCTCGCAGCTGAGCCCCGCTGAGGTGGCCTGGTTCCCCGGTGTGGGGGGGCAGAGATGCTGTAAAAGCAGCCCGGCGGAGGAGATGCATGTTCCGGACTGAATGGAGCAGAAAGCAGCGAAGGAAAGCAGGAAGATGTCCGGCAGGACGCCTCTGACCCCGGTGAGCGAGAGAGAGTCTGACCAGCCGAAGACTTCAGACGGCCTCCCCGAGCCGCCGGCCCCGCCCACCAAGTCATCGAGCCGCCACAGTCTGCTGCCGTCTCGCAGCGCCGGGTCGGCGGCCGCGGACGAACAGCCGCACGTTGGCAACTACCGGCTGCTGAAGACGATCGGCAAGGGCAACTTCGCTAAAGTCAAACTGGCCAAGCACTCGCTGACCGGCCGAGAGgttgCCATCAAGATCATCGACAAAACTCAGCTGAACCCCACAAGTCTGCAGAAGCTCTTCAGGGAAGTCAGCGTGATGAAGATCCTCAACCACCCTAACATCGTGAAGCTGTTTGAGGTGATCGAAACGGAGAAAACTCTGTACCTGGTGATGGAGTACGCCAGCGGGGGTGAAGTCTTTGACTACCTGGTTGCTCACGGACGGATGAAAGAGAAGGAGGCCAGGGCCAAGTTTCGCCAGATTGTGTCAGCGGTGGAGTACTGTCACCAGAAGAGGATAGTACACCGAGACCTCAAGGCAGAGAACCTCCTGCTGGACGCCGACATGAACATAAAGATCGCAGACTTTGGCTTCAGTAACGAGTTCACGCTGGGCAGCAAGCTGGACACCTTCTGTGGCTCTCCTCCGTACGCAGCGCCGGAGCTCTTCCAGGGGAAGAAGTACGACGGGCCCGAGGTGGACGTGTGGAGTCTGGGGGTCATTCTGTACACGCTGGTCAGCGGCTCGCTGCCCTTCGACGGGCAGAACCTCAAggagctGAGGGAGCGTGTCCTCCGAGGAAAGTACCGGATCCCCTTCTACATGTCCACTGACTGTGAGAACCTGCTGAAGAAGCTGCTGGTGCTGAACCCGGGGAAGAGAGGCAGCCTGCAGCAAATCATGAAGGACCGATGGATGAACGTCGGCTACGACGAGAAGGAGCTGAAGACGTACAACGAACCGGAACAGGACTTCAACGACCTCAAACGCATcgAGCTGATGGCGACGATGGGCTTCCCTCAGGAGGAAGTGAAGAAGGCGCTGGAGGGTCAGAAGTACAACGAGGTGACGGCCATCTACCTGCTGCTGGGGAGGAAGGCTGCTGAGGGCGGCGACTGCGGCGGCGAGTCTGTGTCCGGCGGTAACCTGCTCCACAGGTCCCGCCCCAGCAGCGACCTCAACGGCTCCGGCCAGTCCCCCGCACACTCCCGCAGCGCCTcggccaatcagaagcagcGGCGCTTCAGCGACCACGTGGCGCCCTCCATCCCCCCACCTGTCGCCTACACCAAGCGTGGGCACGCCAACAGCGTGGAGAGCGACAGGAAGGACGAGTCGGCGTCGCCCAGCGGAGCTCCGGACCGCCGGAGGTCAGCCACCGCCTcagggagcATAACTCGGAGGAACACGTACGTCAACGAGAGGACGAGCACTGAACGCCATTCGGCGGCTGTTCCCAACGGGAAGGACGGCAGTCTCCCCGAGGTACCTGCAGCTTCCCCGTCCTTATCGCCGGCGGCGACCGTCTCCTCCGCGCGCCCCCGCCACGTGAAGTCCATGTCGGCGTCGGGACATCCCATGAAGTCCTGCCTGCCCCCCATCGACGACAACGTAGAGTACCAGAGCGCCCCCCAGCAGCCGCCGTCCTCCCCCTCGGCCTTCAGcgtcaccagcagcagcagcggcgccACGCCGGACCGGACCCGCTTCCCCCGCGGCTCCTCCAGCCGCTCCACCTTCCACGGCGCTCAGCTCCGAGACCGGCGGCCCGCCACCTACAACGGCCCGCCGGCGTCGCCCAGCCTGTCCACGCACGCCGCCGCTTCGCTGGCCACGCCCCGCCGCGGCACCTCCACCTCCATCATCGGGAAGATCACCTCCAAGTTTGGACGCAGGAGTTTATCGGGTGAGCCCaaagaggaggggcgggactcCAAGCCTCGGGCGCTGCGCTTCACTTGGAGCATGAAGACCACGTCCTCCATGGAGCCGGGGGACATGATGAAGGAGATCCGGAGAGTCCTGGACGCCAACAACTGCGACTACGAGCAGCGCGAGCGCTACTCTCTGTTCTGCGTGCACGGCGATGCCCGGCAGGACAGCCTGGTCCAATGGGAGATGGAGGTGTGCAAGCTGCCCCGCCTCTCGCTCAACGGCGTGCGCTTCAAACGGATCTCCGGCACGTCCATCGCCTTCAAAAACATCGCCTCCAAAGTGGCCAACGAGCTCCGGCTGTGACGGAGGATACCTCGCTAACTGCTGTAGGACTGGGAGGAGGAAACCACCTTATTATACTCAACACTTAACTATTTAATGTTCTCACTAAATGTTTGCCAGTGAAACCAAATATTAGAGCTGATGGGGCGGACGTTCAGTAGGTTGGTTCAACCCCTCGGCGCCGTCACTTCCTGCCGCAGCGAGAAGTTAGCGTTGGTTCATCACTGTTTACGTGCACTTCAGATTTTTACAAAACCTCGGAAACGTCACGTAGAGAGAAACTGAATCTGTCGAGTctttaaaggagacctattGTGCTTTTTATGTATTTCCTGTCAGATCtataatgttggattttcaagttaaaagcccagttcagaccaaggATTTGGAGCGAGCTAAAACCGTTTTAGAACGTCGCAGAGTAAAGAacataagagacgtctcctgtttcaacagccgatagagaagtcagctggtcgaaaggattttgagaacggaaacacacagagagaggaaggtaaAGGACAAACGCACCAGATGTCAGGCCTAATCCTGGAAATGTGCTTCCGAGTTTAGTccgtagtctatatccacgacattccacttccgggaacAAAAAACGAGTAAACCAAATTCAAAACACcgtcacattttgtttttttgcaatttcATATTTTAGGTTTTTCTTTTGAAGAAAGAAATCAAGACAGATGACGTAGTAGTAAAAGTAAATATGAaaaatagtctatatcctcgacattccacttccaggattgcacCGGTGCCGCCGGATATTCTGCCAGATGTCCCTGATTTAGGCCAGAtgtgcgtccccttcctctgtctctgtgtcggggttctaacctccggctgatttgtgaggactatggttaactgctcctcagatctctgcagggtaaatccagacagctagctagactatctgt

Function

GO: NA

KEGG:

id description
K12132 prkC, stkP; eukaryotic-like serine/threonine-protein kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2297 lncRNA downstream 921 4821726 ~ 4826182 (-) False G1664
TU2298 lncRNA downstream 921 4821726 ~ 4826182 (-) True G1664
TU2309 lncRNA downstream 11457 4807904 ~ 4815646 (-) True G1675
TU2300 lncRNA downstream 25133 4799876 ~ 4801970 (-) True G1666
TU2287 lncRNA downstream 77740 4747595 ~ 4749363 (-) True G1657
TU2344 lncRNA upstream 183931 5034505 ~ 5036525 (-) True G1705
TU2372 lncRNA upstream 225394 5075968 ~ 5096624 (-) True G1723
TU2385 lncRNA upstream 268175 5118749 ~ 5123419 (-) False LOC120564103
XR_005639998.1 lncRNA upstream 349633 5200207 ~ 5200828 (-) True LOC120563682
TU2819 lncRNA upstream 380923 5231497 ~ 5353152 (-) False G2010
XM_039807296.1 mRNA downstream 34060 4785365 ~ 4793043 (-) True LOC120563156
XM_039807862.1 mRNA downstream 44332 4774817 ~ 4782771 (-) False LOC120563598
XM_039807664.1 mRNA downstream 65646 4695160 ~ 4761457 (-) True LOC120563484
XM_039807374.1 mRNA upstream 187032 5037606 ~ 5066190 (-) True LOC120563200
XM_039808807.1 mRNA upstream 263446 5114020 ~ 5135305 (-) True LOC120564103
XM_039807848.1 mRNA upstream 297942 5148516 ~ 5150412 (-) True LOC120563591
XM_039807985.1 mRNA upstream 393341 5243915 ~ 5275696 (-) True LOC120563650
XM_039807930.1 mRNA upstream 550987 5401561 ~ 5407181 (-) True LOC120563624
XR_005639982.1 other downstream 43187 4774817 ~ 4783916 (-) True LOC120563598
TU2240 other downstream 70966 4742500 ~ 4756137 (-) True G1623
TU2024 other downstream 481017 4345547 ~ 4346086 (-) True G1464
TU1727 other downstream 1154565 3648688 ~ 3672538 (-) True G1242
TU1725 other downstream 1178873 3581218 ~ 3648230 (-) True G1240
TU2366 other upstream 226032 5076606 ~ 5085518 (-) True G1722
TU2371 other upstream 226032 5076606 ~ 5077554 (-) False G1722
TU2375 other upstream 246795 5097369 ~ 5097634 (-) True G1726
TU2392 other upstream 299349 5149923 ~ 5150419 (-) False LOC120563591
TU2814 other upstream 437502 5288076 ~ 5305165 (-) False G2010

Expression Profile