RNA id: XM_039807758.1


Basic Information

Item Value
RNA id XM_039807758.1
length 2539
RNA type mRNA
GC content 0.57
exon number 6
gene id btbd3a
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 5361351 ~ 5371770 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGGCTGCAGAGCTGTATCCCGCCAAGAAGCTGGTCCCCTCCGCCTCAGCGAGcagcacctcctcctcctccatccagGACCAGTACCAACAGCAGAACCTCGCcaacaacaacagccacagCGCCGCCGCGGCCACGCAGGGCTGCTGCAACTGGCAGGGCCTGTACCCCACCCTCCGGGAGAGGAATTCAGTCATGTTCAACAACGAGATGATGGCGGATGTTCACTTTGTGGTCGGGCCGCCTGGCGGGACGCAGCGAGTACCGGGacacaagTACGTCCTGGCTGTCGGCAGCTCCGTGTTCCACGCCATGTTTTACGGAGAGCTGGCCGAGGACCAGGAGGAGATCCGGATCCCTGACGTGGAGCCTCCTTCGTTCCTGGCCATGTTGAAGTACATCTACTGTGACGAGATCGACCTGTGCGCCGACACCGTGCTCGCCACCCTCTACGCCGCCAAGAAGTACATCGTGCCTCACCTGGCCCGGGCCTGCGTCAACTTCCTGGAGACGAGCCTGAGCGCCAAGAACGCCTGCGTCCTGCTGTCGCAGAGCTGCCTGTTCGAGGAGCCCGACCTCACGCAGCGCTGCTGGGAGGTGATCGACGCGCAGGCCGAGCTCGCCTTGCGCTCCGAGGGCTTCTGCGACATCGACGCGCAGACCTTGGAGAGCATCCTGCGCCGCGAGACGCTCAACGCCAAGGAGATGGTCGTGTTCGAGGCGGCGCTGAGCTGGGCCGAGGCCGAGTGCCAGCGGCGCGACCTGGCGCCGACGATCGAGAACAAGCGCCTGGCTCTCGGCAAAGCCATCTACCTGATCCGAGTCCCCACCATGCTGCTGGAGGACTTCGCCAACGGCGCGGCGCAGTCGGGCGTGCTCACGCTCAACGAGACCAACGACATCTTCCTGTGGTACACCGCGGCCAACAAGCCCGAGCTGCTGTTCTGCACGAAACCGCGCAAGGGCCTGGCGCCGCAGCGCTGCCACCGCTTCCAGTCGTGCGCCTACCGCAGCAACCAGTGGCGCTACCGCGGCCGCTGCGACAGCATCCAGTTCGCCGTGGACAAGCGCGTCTTCATCGCCGGCTTCGGCCTGTACGGCTCCAGCTGCGGCTCGGCCGAGTACAGCGCCAAGATCGAGCTGAAGCGCCAGGGCGTGTCCATGGCGCACGTCATCAAGTACTTCTCGGACGGCTCGAGCAGCACGTTCCCCGTGTCCTTCGACTACCCCGTGCAGATCGAGCCCGACACCTTCTACACCGCCAGCGTGGTGCTGGACGGCAACGAGCTGAGCTACTTCGGCCAGGAGGGCATGACGGAGGTGCAGTGCGGGAAAGTGACCTTCCAGTTCCAGTGCTCGTCGGACAGCACCAACGGCACCGGCGTGCAGGGCGGCCAGATCCCCGAGCTCGTCTTCTACGCCTGAGAGACGCGCGGAGATTCTCACTGCTTCACCGCTAGGGGTTGGGCATCGAGGAACCGGTTCCTACTACCTCGTTTTGGAGGatttttggtttcaaatccgatcactGGGTTACGAATTTCAACGTGCGCAAGTCTGGGTTTCCGTAGCGGGCCGGGCGCTTGTTGCGTTGCGGCCTCGGAGCACGGTAAGCGGCGCTCCTAGCTACGTTGGAAAAAGCCCCCGTCTGCATtgaatcaaaatcaaactttccCTCTTATTCGTGAAAATAGGCACGTGCGACCCGCTTCAGCTCCACCCGCTCAaagaatcgagaatcgatgagaaccggaatcgaaaaggAAGGATCTGAATCCGAATGgttaatatccaaacgatgcccagcccTGTTCACTGCCACCACCACGCGGACTTTTATGTGTTAAGTGTTGGAGACGAGTTCTCAGGAAGCTGGTTCGAGGAGAGATGGACGGActgagtagggctgcacgatatggcCGACCGATCTCACGAAGTGGCGTTGTGtgtgacacgccaattcgtattagaggtgtgaatcttcgcCGATCTCCCGATTTAGATTACGATTATCAAGTcagcgattcgatatctcgatgcgtcAAATGCATGTTCCTAATTAAAGCCACGTAGGATATTTAAATCGTAGCTTTTCAAGCTTGTCCACATCTGTTTTATCGAGAGAgagttcatctcacttcaattttgttgctgcaaaaatgggtagggctgctccctcttagtcgattagtggactaatcggtcgttttgatCTTAGTCAACATGGTTGTTGTGTGCTGCGATGTAGCCCTAAAGCAGCTCGCGGATAGGTTGACAAACTGAGACCCCGATATTAACCCTCTTCTTGTCTTCGGgccaaatttaaaattttattttttttggtcgTCACTATAGCTTCGGTCgtcttttttttctacactttttgtcacttttcctggAGTTTATGTTGATTTCTCCTAgcgctgctccctcttagtcgactaatcggttgttttggtcttagtcaacttagatctctttactccattagtcatgtctgatgctgttttcatgctgaatgacttatttccaagaaacg

Function

GO: NA

KEGG:

id description
K10478 BTBD3_6; BTB/POZ domain-containing protein 3/6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2428 lncRNA upstream 15452 5340592 ~ 5345899 (+) False G1772
TU2429 lncRNA upstream 15452 5340592 ~ 5345899 (+) True G1772
TU2430 lncRNA upstream 20880 5335347 ~ 5340471 (+) True G1773
TU2431 lncRNA upstream 20880 5335347 ~ 5340471 (+) False G1773
TU2432 lncRNA upstream 20880 5335347 ~ 5340471 (+) False G1773
TU2480 lncRNA downstream 3808 5375578 ~ 5377774 (+) True G1786
TU2479 lncRNA downstream 5193 5376963 ~ 5377774 (+) False G1786
TU2433 lncRNA downstream 6370 5378140 ~ 5379118 (+) False G1774
TU2434 lncRNA downstream 6370 5378140 ~ 5379265 (+) True G1774
TU2435 lncRNA downstream 6370 5378140 ~ 5379118 (+) False G1774
XM_039807772.1 mRNA upstream 33434 5306988 ~ 5327917 (+) True LOC120563544
XM_039807615.1 mRNA upstream 164234 5180196 ~ 5197117 (+) True LOC120563443
XM_039807610.1 mRNA upstream 164234 5180196 ~ 5197117 (+) False LOC120563443
XM_039807626.1 mRNA upstream 164234 5180196 ~ 5197117 (+) False LOC120563443
XM_039807623.1 mRNA upstream 164234 5180196 ~ 5197117 (+) False LOC120563443
XM_039808012.1 mRNA downstream 15623 5387393 ~ 5468878 (+) False acaa1
XM_039809144.1 mRNA downstream 129262 5501032 ~ 5518108 (+) True ndufaf5
XM_039809476.1 mRNA downstream 217899 5589669 ~ 5591008 (+) True LOC120564466
XM_039809499.1 mRNA downstream 234684 5606454 ~ 5607801 (+) True LOC120564476
XM_039808416.1 mRNA downstream 418527 5790297 ~ 5803234 (+) True LOC120563910
TU2415 other upstream 33594 5235346 ~ 5327757 (+) False LOC120563544
TU2407 other upstream 138607 5218068 ~ 5222744 (+) True G1756
TU2210 other upstream 322637 4977783 ~ 5038714 (+) False G1600
TU2209 other upstream 322637 5034565 ~ 5038714 (+) True G1600
TU2062 other upstream 900947 4455207 ~ 4460404 (+) True G1487
TU2438 other downstream 847 5372617 ~ 5374907 (+) True G1775
TU2539 other downstream 504838 5876608 ~ 5916374 (+) False snrpb2
XR_005641751.1 other downstream 1013832 6385602 ~ 6402640 (+) True LOC120573424
XR_005641779.1 other downstream 1013832 6385602 ~ 6402640 (+) False LOC120573424
XR_005641746.1 other downstream 1013832 6385602 ~ 6402040 (+) False LOC120573424

Expression Profile