RNA id: XM_039807930.1


Basic Information

Item Value
RNA id XM_039807930.1
length 1731
RNA type mRNA
GC content 0.41
exon number 7
gene id LOC120563624
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 5401561 ~ 5407181 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TATAAGGGCCTGTgactctcttttccctccaaaCCAGACCAGGCAGAACAAAGAGTATTGATTTTCTTTCAGTGACAGTCATCAGcttgttcttcttctctgtGTCAGCCAATCACCACCTCAGCAAAGATGACATCAGTCTTTCCGTTTGCTTTGTTGCTCTGTTTGTCCAGTGGACTGTTAGCTGCATATGGTGAACCTGCCTGCCCTCCTGGTTGGACTCAGTTTGACACTCGCTGTTTCGCTTTCTACATGCAGAGAAAGACCTGGCTCGATGCAGAGACCTTCTGCCAGACCGCTGGTGGGCATCTGGCTTCCATCTACTCAGCTGAGGAAAATACATTCCTCCAAGACTTCATTTTCCAAGTGACCGGTGCACATACAACTTCCTGGATTGGAGGCACTGACACAGACAAGGTGGGTACATGGATGTGGAGTGATGGATCCAGATTGAAATACAAAAGCTGGGCTGCGGGGGAGCCTAACCTGCCTGGAGTGGAGGACTGTCTTCTGATGAACTGGGTTGgatTCACCAGCTGGTTCGACTGGGTTTGTACCAACCAGGCTTCTTTCGTCTGCTCCAAGAACAGCGTGTAACTCTACCACGCCATCATGATGCCTCTACAGCTCATCTATAATCTCTATCATTGATTCACTTTCAGTTTGTTCGGCAGACAGAAacagctctctgctctctgatgACTTACTTTCACTTGTTTATTATCTGAAGAGTTAGGGAACAGTTCACATTTGGGTTTAAAATTAGACAGAAACTGGCTCACTGAGCTGGACAAAAACATCAGTACATCTTTTCCATTTTAGTTTACTGAATATAATCTGTTATAAACAGCGCCCActcatctgataaaatattaaCATAATAATTAGATTTCTCTCTGAGACTTATTGTTCAGATCGATACAACTCTTGTGTGTGCGCTAACTATGAAGTTCCCTCGAGCAGATGTTAGctcagcataaagactggaaacagggggaaacagctagcatagcttagcataaagactggaaacggacagaaacagctagcttagcttagcataaagactggaaacagcgtGCCTGACTCCGtccaaatgtaaatgtaaaaacaaataagTAATTGGACTTAAATCTATAGTAAATAACACaatgaaatacagaaaacatttgaatactCACACATCTTTTCCATTTTAGTTTACTGAATATAATCTGTTATAAACAGCGCCCActcatctgataaaatattaaCACACTAATTAGATTTCTCTCTGAGAGTTATTGTTCAGATCGATACAACTCTCATGTGTGTACGCTAAAGATGAAGTTCCCTCAAGCAGGCGTTAGCCttgtttagcataaagactggaaacagggggaaacagctagcctagcttagcataaagactggaaacagctagcctgactcCATCCAAAGGTAAACCTACCAGACATGAGTGGTGACGATCTTTTTATCCAAAATGGCCatatagaaaataaaagtgtatatTTTGTCGGACCTTTCTGTGATACAAGAGGAGAATGCAACTATAATAACACTTCataataactattaataattcaTATAGTCCACTGGTTTAATGAACTAGCTCCTTTTTATTCCTAAAACCGATATGTTGTGTTCTTTATTCAGCAGATTCTCTtcactatatactatatactcaAATAagcattcaaaaataaaagacatattgtcacaaaaacagtg

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0009072 aromatic amino acid family metabolic process biological_process
GO:0006520 cellular amino acid metabolic process biological_process
GO:0044421 obsolete extracellular region part cellular_component
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component

KEGG:

id description
ko00360 Phenylalanine metabolism
ko00380 Tryptophan metabolism
ko04146 Peroxisome
ko04610 Complement and coagulation cascades

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2855 lncRNA downstream 23775 5375492 ~ 5377786 (-) True G2034
TU2819 lncRNA downstream 48409 5231497 ~ 5353152 (-) False G2010
TU2818 lncRNA downstream 48409 5276050 ~ 5353152 (-) True G2010
TU2816 lncRNA downstream 48409 5288339 ~ 5353152 (-) False G2010
TU2809 lncRNA downstream 55239 5320067 ~ 5346322 (-) False G2009
TU2872 lncRNA upstream 8155 5415336 ~ 5415888 (-) True G2047
TU2883 lncRNA upstream 51600 5458781 ~ 5459073 (-) True G2056
TU2898 lncRNA upstream 94872 5502053 ~ 5507095 (-) True G2064
TU2904 lncRNA upstream 168671 5575852 ~ 5624485 (-) True G2070
TU2911 lncRNA upstream 282782 5689963 ~ 5692475 (-) True G2076
XM_039807985.1 mRNA downstream 125865 5243915 ~ 5275696 (-) True LOC120563650
XM_039807848.1 mRNA downstream 251149 5148516 ~ 5150412 (-) True LOC120563591
XM_039808807.1 mRNA downstream 266256 5114020 ~ 5135305 (-) True LOC120564103
XM_039807374.1 mRNA downstream 335371 5037606 ~ 5066190 (-) True LOC120563200
XM_039807733.1 mRNA downstream 550987 4827103 ~ 4850574 (-) False LOC120563519
XM_039807835.1 mRNA upstream 62882 5470063 ~ 5471326 (-) True LOC120563585
XM_039807973.1 mRNA upstream 64265 5471446 ~ 5472005 (-) True LOC120563643
XM_039808022.1 mRNA upstream 69364 5476545 ~ 5499993 (-) True LOC120563672
XM_039808067.1 mRNA upstream 324258 5731439 ~ 5736986 (-) False LOC120563692
XM_039808051.1 mRNA upstream 324258 5731439 ~ 5736986 (-) True LOC120563692
TU2814 other downstream 96396 5288076 ~ 5305165 (-) False G2010
TU2812 other downstream 96396 5288339 ~ 5305165 (-) False G2010
TU2392 other downstream 251142 5149923 ~ 5150419 (-) False LOC120563591
TU2375 other downstream 303927 5097369 ~ 5097634 (-) True G1726
TU2366 other downstream 316043 5076606 ~ 5085518 (-) True G1722
TU2877 other upstream 88857 5496038 ~ 5499938 (-) False LOC120563672
TU2878 other upstream 88857 5496038 ~ 5499938 (-) False LOC120563672
TU2879 other upstream 88857 5496038 ~ 5499938 (-) False LOC120563672
TU3000 other upstream 703958 6111139 ~ 6111592 (-) True G2146
TU2942 other upstream 795145 6202326 ~ 6206890 (-) False LOC120563747

Expression Profile