RNA id: XM_039807947.1


Basic Information

Item Value
RNA id XM_039807947.1
length 1678
RNA type mRNA
GC content 0.40
exon number 7
gene id LOC120563624
representative False

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 5401561 ~ 5407181 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAGAACAAAGAGTATTGATTGACAGTCATCAGcttgttcttcttctctgtGTCAGCCAATCACCACCTCAGCAAAGATGACATCAGTCTTTCCGTTTGCTTTGTTGCTCTGTTTGTCCAGTGGACTGTTAGCTGCATATGGTGAACCTGCCTGCCCTCCTGGTTGGACTCAGTTTGACACTCGCTGTTTCGCTTTCTACATGCAGAGAAAGACCTGGCTCGATGCAGAGACCTTCTGCCAGACCGCTGGTGGGCATCTGGCTTCCATCTACTCAGCTGAGGAAAATACATTCCTCCAAGACTTCATTTTCCAAGTGACCGGTGCACATACAACTTCCTGGATTGGAGGCACTGACACAGACAAGGTGGGTACATGGATGTGGAGTGATGGATCCAGATTGAAATACAAAAGCTGGGCTGCGGGGGAGCCTAACCTGCCTGGAGTGGAGGACTGTCTTCTGATGAACTGGGTTGgatTCACCAGCTGGTTCGACTGGGTTTGTACCAACCAGGCTTCTTTCGTCTGCTCCAAGAACAGCGTGTAACTCTACCACGCCATCATGATGCCTCTACAGCTCATCTATAATCTCTATCATTGATTCACTTTCAGTTTGTTCGGCAGACAGAAacagctctctgctctctgatgACTTACTTTCACTTGTTTATTATCTGAAGAGTTAGGGAACAGTTCACATTTGGGTTTAAAATTAGACAGAAACTGGCTCACTGAGCTGGACAAAAACATCAGTACATCTTTTCCATTTTAGTTTACTGAATATAATCTGTTATAAACAGCGCCCActcatctgataaaatattaaCATAATAATTAGATTTCTCTCTGAGACTTATTGTTCAGATCGATACAACTCTTGTGTGTGCGCTAACTATGAAGTTCCCTCGAGCAGATGTTAGctcagcataaagactggaaacagggggaaacagctagcatagcttagcataaagactggaaacggacagaaacagctagcttagcttagcataaagactggaaacagcgtGCCTGACTCCGtccaaatgtaaatgtaaaaacaaataagTAATTGGACTTAAATCTATAGTAAATAACACaatgaaatacagaaaacatttgaatactCACACATCTTTTCCATTTTAGTTTACTGAATATAATCTGTTATAAACAGCGCCCActcatctgataaaatattaaCACACTAATTAGATTTCTCTCTGAGAGTTATTGTTCAGATCGATACAACTCTCATGTGTGTACGCTAAAGATGAAGTTCCCTCAAGCAGGCGTTAGCCttgtttagcataaagactggaaacagggggaaacagctagcctagcttagcataaagactggaaacagctagcctgactcCATCCAAAGGTAAACCTACCAGACATGAGTGGTGACGATCTTTTTATCCAAAATGGCCatatagaaaataaaagtgtatatTTTGTCGGACCTTTCTGTGATACAAGAGGAGAATGCAACTATAATAACACTTCataataactattaataattcaTATAGTCCACTGGTTTAATGAACTAGCTCCTTTTTATTCCTAAAACCGATATGTTGTGTTCTTTATTCAGCAGATTCTCTtcactatatactatatactcaAATAagcattcaaaaataaaagacatattgtcacaaaaacagtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2855 lncRNA downstream 23775 5375492 ~ 5377786 (-) True G2034
TU2816 lncRNA downstream 48409 5288339 ~ 5353152 (-) False G2010
TU2872 lncRNA upstream 8198 5415336 ~ 5415888 (-) True G2047
TU2883 lncRNA upstream 51643 5458781 ~ 5459073 (-) True G2056
TU2898 lncRNA upstream 94915 5502053 ~ 5507095 (-) True G2064
TU2904 lncRNA upstream 168714 5575852 ~ 5624485 (-) True G2070
TU2911 lncRNA upstream 282825 5689963 ~ 5692475 (-) True G2076
XM_039807985.1 mRNA downstream 125865 5243915 ~ 5275696 (-) True LOC120563650
XM_039807848.1 mRNA downstream 251149 5148516 ~ 5150412 (-) True LOC120563591
XM_039808807.1 mRNA downstream 266256 5114020 ~ 5135305 (-) True LOC120564103
XM_039807374.1 mRNA downstream 335371 5037606 ~ 5066190 (-) True LOC120563200
XM_039807726.1 mRNA downstream 550987 4827103 ~ 4850574 (-) True LOC120563519
XM_039807835.1 mRNA upstream 62925 5470063 ~ 5471326 (-) True LOC120563585
XM_039807973.1 mRNA upstream 64308 5471446 ~ 5472005 (-) True LOC120563643
XM_039808022.1 mRNA upstream 69407 5476545 ~ 5499993 (-) True LOC120563672
XM_039808067.1 mRNA upstream 324301 5731439 ~ 5736986 (-) False LOC120563692
XM_039808051.1 mRNA upstream 324301 5731439 ~ 5736986 (-) True LOC120563692
TU2814 other downstream 96396 5288076 ~ 5305165 (-) False G2010
TU2812 other downstream 96396 5288339 ~ 5305165 (-) False G2010
TU2392 other downstream 251142 5149923 ~ 5150419 (-) False LOC120563591
TU2375 other downstream 303927 5097369 ~ 5097634 (-) True G1726
TU2371 other downstream 324007 5076606 ~ 5077554 (-) False G1722
TU2877 other upstream 88900 5496038 ~ 5499938 (-) False LOC120563672
TU2878 other upstream 88900 5496038 ~ 5499938 (-) False LOC120563672
TU2879 other upstream 88900 5496038 ~ 5499938 (-) False LOC120563672
TU3000 other upstream 704001 6111139 ~ 6111592 (-) True G2146
TU2942 other upstream 795188 6202326 ~ 6206890 (-) False LOC120563747

Expression Profile