RNA id: XM_039809074.1


Basic Information

Item Value
RNA id XM_039809074.1
length 2377
RNA type mRNA
GC content 0.48
exon number 12
gene id LOC120564231
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 35732968 ~ 35739670 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCGAACAGGGATCCATATGCGCCATTTTGAGTGTGGAAATGCGCTGCGGGTGTGACAGCGGGTTTAATTCACGCACCTAATTAAAACGCATCGCTCGACACGGCGCAGGAAGCAGAATCGCACGTTCCCAACAGACAAACCCCGGATGTCTTTAGTATAATTAAGTTTCCAGTTCTATAAGCAGTCCAACTTTGGTTGCATAAACTCCCACGCGTTGCGCAACTTATAGGTCGTGCATTGCCTCCAGTGTATTTTGCCTCACCTGTCATGGAGGAAAAGAGCTCCTACGTTTGCCGTTACATATCCCTGTGACGTTGCAACCGGCGAAATATTACTTAAGCGACTTTTATAGCTCACCTCTACCGCAGAAAAGTTATCGCAGCATCAGATTAAAGCCACCAGccggcagaaaaaaaaagCCTACAGTATGGCTCTCAGAGGTGCCGTCACCCGCCTGCTCTCCAACAGCCAAAAATGTGCTGCTGTCACGGTGTCTAGAGCCCAGGGCACAGCTGCTACCGCTGCCAAAGATgctgaagaaaataaaaagccaACGAAGGAACCCAAGGTGGCCTTCAACTGGCGGGATGCACTGAATCTGGAGGGCCAGCTGACCGAGGAGGAGATCATGATCCGGGACTCTTTCCGCGACTACTGCCAGGAAAAACTCATGCCCCGCATCCTCATGGCCAACAGACACGAACATTTCCACCGTGAGATTGTCTCAGAGATGGGAGAGTTGGGCGTCTTAGGCCCAACTATTAAAGGGTACGGCTGTGCAGGCACGAGTTATGTGGCGTACGGCTTGATTGCCAGAGAGGTTGAGCGAGTGGACAGCGGGTATCGGTCGGTCATGAGTGTCCAGTCTTCACTGGTCATGCACCCTATCAATGCTTATGGCACTGAGGCCCAAAAGGAGAAGTACCTGCCCCGGCTTGCTCGGGGAGAAATCCTGGGCTGCTTTGGCTTGACGGAGCCTAACCACGGCAGTGATCCCAGCAGTATGGAGACCAAGGCCAAATACAACCCATCCAGTGGTACCTTCACCATCAGTGGAGCCAAGACCTGGATCACAAATTCCCCCGTGGCAGACATCGCAGTGGTGTGGGCCAAGTGTGAAGATGGTAAGGTGCGGGGTTTCATCTTGGAGCGTGGGATGAAGGGGTTGGCCACCCCCAAGATTGAGGGCAAGTTCTCGCTGAGGGCGTCCGCCACCGGCATGATCCTGATGGACGAAGTGGAAGTTCCCCAGGAGAACCTGCTGCCCAACGTCTCTGGTCTGGCTGGTCCTTTTGGCTGTCTGAACAACGCCCGGTATGGCATTGCATGGGGAGCTCTGGGAGCTGCTGAATTCTGCTTCCATGCTGCACGGCAGTACACGCTGGACAGAATCCAGTTTGGGGTGCCACTGGCCAGGAACCAGCTGATGCAGAAGAAAATGGCTGACATGCTGACAGAGATCACCCTTGGGCTGCAGTCCTGTCTGACCCTGGGAAGACTTATTGATCAGAAGAAAGCAGCACCAGATATGATCTCCATGCTAAAGAGGAATAGCTGTGGCAAGGCTTTGGATATTGCCAGACAAGCCAGAGACATGCTGGGAGGAAATGGCATCGCAGATGAGTACCACATAATCCGTCACGTCATGAACCTGGAGGCCGTCAACACATACGAGGGAACTCACGACATCCATGCCTTGATCCTGGGCAGAGCCATCACTGGACTGCAGTCTTTCACTGTTGGAAAGTAAAGGTTGAAATGGACTTGATGTGGATTAGTGCCGTGCTACCTGTTTGCCATTGGGCAAACTCATGTGTATAGAAACATAAAGTGCACTTAATCTGTCTCACATTATGAGCGTTGGCTGGTGGGATGAATCTCAAATGGCTcattacattttatgttttcaaACTAGCGATATGAGCCGTCTGTTACTGTCTCTGTTCGGTGTCTTTGGTGAATATCTAAGGTCAACCTAACTAAGCATTGCGTCCAACTGGGATGACATTTATAGTTAGGATGCCTAAAATATACTTCACATACTGACTATGAAGGGTGCATGTAAATGTTGTGGCATTATGTTGGTTTATTTTGTGAtaattaaatatgtaaataaatggcTTTGAATGAGAAATATATTGAGTGTAGCTGAGATTCAGTATGTACAGATCCCTTGATACAGACTACAAATCTCTTCTGTTGTCATATTACATTATCATGTTAGTTACTGTAGGTCTGAATAACTCTCATTTAAGTGTTGGTGTAAAATGTTAAACACCTGAGAGCAAAATAACATGGTTTATTTTGTCCTTGTTGTACTTGTATTTATTAAATCAACGGATGCTGGAATTGAACATACATTAAAACATGGAttcag

Function

GO: NA

KEGG:

id description
K00252 GCDH, gcdH; glutaryl-CoA dehydrogenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13682 lncRNA downstream 30376 35698632 ~ 35702592 (-) True G10143
TU13606 lncRNA downstream 80797 35651972 ~ 35652171 (-) True G10091
TU13562 lncRNA downstream 159524 35562913 ~ 35573444 (-) True G10063
TU13721 lncRNA upstream 59951 35799621 ~ 35843137 (-) True G10174
TU13750 lncRNA upstream 181185 35920855 ~ 35921076 (-) True G10198
TU13752 lncRNA upstream 189079 35928749 ~ 35929260 (-) True G10200
TU13754 lncRNA upstream 191929 35931599 ~ 35931855 (-) True G10202
TU13960 lncRNA upstream 422346 36162016 ~ 36166879 (-) False G10349
XM_039795211.1 mRNA downstream 41940 35688489 ~ 35691028 (-) False LOC120555967
XM_039795205.1 mRNA downstream 41940 35688489 ~ 35691028 (-) True LOC120555967
XM_039796360.1 mRNA downstream 104076 35623904 ~ 35628892 (-) True prdx2
XM_039822414.1 mRNA downstream 146355 35584541 ~ 35586613 (-) False LOC120572869
XM_039809928.1 mRNA downstream 191969 35493057 ~ 35540999 (-) False grk4
XM_039807351.1 mRNA upstream 76102 35815772 ~ 35825168 (-) True nfil3-5
XM_039807405.1 mRNA upstream 89085 35828755 ~ 35831299 (-) True LOC120563277
XM_039807489.1 mRNA upstream 89085 35828755 ~ 35831289 (-) False LOC120563277
XM_039807596.1 mRNA upstream 104617 35844287 ~ 35848461 (-) True klf1
XM_039812943.1 mRNA upstream 205460 35945130 ~ 35969266 (-) False micall1a
TU13574 other downstream 146386 35584470 ~ 35586582 (-) True LOC120572869
XR_005640911.1 other downstream 255608 35477231 ~ 35477360 (-) True LOC120569607
TU13477 other downstream 332494 35398640 ~ 35400474 (-) True G9997
TU13113 other downstream 1275333 34452850 ~ 34457635 (-) True G9740
TU12854 other downstream 2214845 33497160 ~ 33518123 (-) False stox2a
XR_005640401.1 other upstream 204378 35944048 ~ 35969266 (-) False micall1a
XR_005640904.1 other upstream 471458 36211128 ~ 36211215 (-) True LOC120569591
XR_005640910.1 other upstream 472876 36212546 ~ 36212627 (-) True LOC120569604
TU13981 other upstream 495113 36234783 ~ 36243319 (-) False slc5a10
XR_005640907.1 other upstream 542337 36282007 ~ 36282095 (-) True LOC120569597

Expression Profile