RNA id: XM_039809499.1


Basic Information

Item Value
RNA id XM_039809499.1
length 992
RNA type mRNA
GC content 0.45
exon number 2
gene id LOC120564476
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 5606454 ~ 5607801 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGGAGACACAGGACGGAGCAGAGCTCTGCTTTCCACAACTCTTCAACACCTCCTGCAGGAAGGTGACATCTCCTTGGTTTGAAGTGATGCTCATTCACATTTTGCTCTTCTCAATTTCTCTGCTCACTGTAGCTCTCAACCTGCTTGTCATCATCTCAGTCTCCCACTTCAAgcagctccacacacccaccaacatcctcctcctctctctggctgtctcagacCTTCTAGTGGGCCTCTTGGCAATGCCGGGAGAAATCGTCCGAAGaacatcctgctggtttcttggtgactttgtgtgttttctttataattATCTTTCAACCATCATTTTCGCATCCTCAGTAGGTGACATGGTGCTCATATCAGTTGACCGTTATGTGGCTATTTGTGACCCTCTGCATTACAACAACAGAATCACTGTCAACAGAGTtaaactctgtgtttgtctgtgttggctcTATTCTGTTTCCTACAGCTTTCTCTTTGTGAAGGATGAACTGACTCAACTGGGGAGGTATAAATCCTGCTACGGAGAATGTGTGTTGGTCGTTGACTATGTCTTGGGAGCTGTAGATGTTGTTTTGAGCTTTATTATTCCTTTTACTGTCATCATAGCTCTGTATCTGAGAATATTtgccgtggctgtgtctcaggctcgtgccatgcgctctcacattacagctgtcacactccagcattcagagactccaaaggcaaagaaatcagagctgaaagcagccaggactcTTGGTGTTCTTGTAGTTGTGTTCCTACTATGTTTCTGCCcatatttctctgtctctcttgcagGTGACAGCTTGGTCAATGCTTCATCTGCATCCTATGTTCTCTTTGTGTTGTATTGtaactcttgtctaaaccctgtgatctatgccttgttttacccctggtttagaaaatCAGTTAAACTCATAGTTACTCTTCagatactgcagcctggctcctgtgagaccaacatgctgtagag

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2508 lncRNA upstream 118705 5483542 ~ 5487749 (+) True G1792
TU2506 lncRNA upstream 130789 5474433 ~ 5475665 (+) True G1791
TU2453 lncRNA upstream 135045 5468671 ~ 5471409 (+) False acaa1
TU2530 lncRNA downstream 29899 5637700 ~ 5651160 (+) True G1813
TU2535 lncRNA downstream 82168 5689969 ~ 5692473 (+) True G1817
TU2489 lncRNA downstream 158173 5765974 ~ 5779474 (+) False G1787
TU2493 lncRNA downstream 158173 5765974 ~ 5779474 (+) False G1787
TU2495 lncRNA downstream 158173 5765974 ~ 5779474 (+) False G1787
XM_039809476.1 mRNA upstream 15446 5589669 ~ 5591008 (+) True LOC120564466
XM_039809144.1 mRNA upstream 88346 5501032 ~ 5518108 (+) True ndufaf5
XM_039808012.1 mRNA upstream 137576 5387393 ~ 5468878 (+) False acaa1
XM_039807758.1 mRNA upstream 234684 5361351 ~ 5371770 (+) True btbd3a
XM_039807772.1 mRNA upstream 278537 5306988 ~ 5327917 (+) True LOC120563544
XM_039808416.1 mRNA downstream 182496 5790297 ~ 5803234 (+) True LOC120563910
XM_039808423.1 mRNA downstream 182496 5790297 ~ 5803234 (+) False LOC120563910
XM_039808496.1 mRNA downstream 268746 5876547 ~ 5882423 (+) True snrpb2
XM_039808449.1 mRNA downstream 431410 6039211 ~ 6058589 (+) True prokr1a
XM_039808345.1 mRNA downstream 481051 6088852 ~ 6093726 (+) True LOC120563871
TU2438 other upstream 231547 5372617 ~ 5374907 (+) True G1775
TU2415 other upstream 278697 5235346 ~ 5327757 (+) False LOC120563544
TU2407 other upstream 383710 5218068 ~ 5222744 (+) True G1756
TU2210 other upstream 567740 4977783 ~ 5038714 (+) False G1600
TU2539 other downstream 268807 5876608 ~ 5916374 (+) False snrpb2
XR_005641751.1 other downstream 777801 6385602 ~ 6402640 (+) True LOC120573424
XR_005641779.1 other downstream 777801 6385602 ~ 6402640 (+) False LOC120573424
XR_005641746.1 other downstream 777801 6385602 ~ 6402040 (+) False LOC120573424
XR_005641785.1 other downstream 777801 6385602 ~ 6402040 (+) False LOC120573424

Expression Profile