RNA id: XM_039809861.1


Basic Information

Item Value
RNA id XM_039809861.1
length 1714
RNA type mRNA
GC content 0.46
exon number 13
gene id LOC120564677
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 15395835 ~ 15401445 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGGTGCTGCAGGATATAAAAGCCTCTGTCGTGATTTGGGGCTTTGTTGCGTTTTTGTGCTGTCGTTGAAGGTAGAGAGAAAAACACGCAAAGATGGGCTTCTATTTCTCCACTGAGACATGGACCCTCCTGGTGGCTTTCATCACACTGACCTTTGTGTATGTCTGCTGGCAATTTGGAACATTTAAGAAGATGGGCATCCCTGGTCCCAGACCAATCCCTTTTTTCGGCACTATGCTAGCATATAAAAAGGGATTCACCATCTTTGATGAAATGTGCTACAAGAAATATGGGAAAACATGGGGCATTTTTGATGGCCGTCAGCCCGTGCTGTGCATTGCAGATCCTGCCGTGATCAAAACTGTTCTGATAAAGGAGTGTTACTCTCTCTTCACTAATCGTAGAAACTTCCGGCTGAACGGACAACTGTACGATGCCGTGTCCATCGCTGAGGATGATCAGTGGAGGAGGATCCGAAgtgtcctctctccttcctttacCTCAGGAAGACTGAAAGAGATGTTTGGCATAATGAAGCACCACTCTGCTAACCTGATCAGCAGCATGAAAAAGAAGGCAGACAAGGATGAGCCCTTAGAGCTGAAGGAGTTCTTTGGACCCTACAGTATGGATGTAGTAACCAGCACAGCCTTCAGTGTCGATATAGACTCACTCAACAACCCCTCAGACCCTTTTGTCACTAACATCAAGAAGATGCTGAAGTTTGACTTGTTTAACCCTATCTTCCTCATTGTTGCTTTCTTCCCCTTTATGGGTCCTATTTTGGAGAAGATGGAGTTTTCCTTTTTCCCTGTGGCTGTCACAGACTTCTTTTACGCTGCACTGCAGAAGATCAAGTCTAATCGAGAACAAAGCAAGCAAAAGAGTCGGGTGGATTTCCTTCAGCTGATGATTGACTCCCAGAAAAACAATGACCTCAGTAAAGTGGAACAGGATAAAGGTTTAACTGATCATGAGATCCTCTCTCAAGCAATGATTTTCCTCTTTGCTGGCTATGAAACAAGCagcagctctctctctttcatggcTTACAATCTGGCCACAAACCCTCATACCATGAAACTGCTGCAGGAGGAGGTCGACTCCACCTTCCCTGATAAGGGTCCTGTTGAATACCAGGCTCTGATGCAGATGGAATATCTAGACTGTGTCATTAACGAGTCTCTCAGATTGTACCCCATTGCCCCACGCATTGAGCGTGTAGCCAAGGCGACTGTGGAGATAAATGGCCTTGTGATACCAAAAGGTATGATTGTCATGGTACCCACATGGCCCCTGCACCGGGACCCTGATCTGTGGTCCGAGCCGGAGAAGTTCAAACCTGAGAGGTTCAGCAAGGAAAACAAGGAGACTATTGATCCATACACGTACATGCCTTTCGGGGCAGGACCAAGGAACTGCATTGGGATGCGATTTGCTCTGGTGATGATGAAACTAGCAATGGTGGAGATCCTCCAGAGATACAGCTTCTCTGTGTGTAAGGAGACTGAGATCCCCTTGGAGATGGACATCCAGGGCCTGCTGGCCCCAAAACGACCAATCAAACTGAAGCTGGTGCCACGTTCTGAACCCTCAAACTAAATCAACAACAAGATAAAGAATAATCATTTTAGCTATGTTGTATACAGACCTACTGTGAATAAAAAAGATGTCAATTTGTTCATGGTAATATTAAAGTTATGTTTACATCTGTA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0005506 iron ion binding molecular_function
GO:0070330 aromatase activity molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K17689 CYP3A4; cytochrome P450 family 3 subfamily A4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6420 lncRNA downstream 66544 15328188 ~ 15329291 (-) True G4729
TU6407 lncRNA downstream 74452 15278258 ~ 15321383 (-) False G4722
TU6408 lncRNA downstream 74452 15319305 ~ 15321383 (-) True G4722
TU6397 lncRNA downstream 132403 15199745 ~ 15263432 (-) True G4713
TU6391 lncRNA downstream 241689 15153544 ~ 15154146 (-) True G4710
TU6511 lncRNA upstream 329210 15730655 ~ 15730956 (-) True G4797
TU6512 lncRNA upstream 333910 15735355 ~ 15735682 (-) True G4798
TU6513 lncRNA upstream 334344 15735789 ~ 15736178 (-) True G4799
TU6529 lncRNA upstream 379952 15781397 ~ 15781753 (-) True G4815
TU6580 lncRNA upstream 592159 15993604 ~ 15994085 (-) True G4860
XM_039809839.1 mRNA downstream 2162 15377200 ~ 15393673 (-) True foxk1
XM_039809847.1 mRNA downstream 2163 15377200 ~ 15393672 (-) False foxk1
XM_039797266.1 mRNA downstream 81930 15312432 ~ 15313905 (-) True LOC120557175
XM_039804872.1 mRNA downstream 83876 15310698 ~ 15311959 (-) True LOC120561684
XM_039810761.1 mRNA downstream 96997 15293871 ~ 15298838 (-) True zgc:77849
XM_039811990.1 mRNA upstream 9053 15410498 ~ 15414963 (-) True gpank1
XM_039810016.1 mRNA upstream 17807 15419252 ~ 15424386 (-) False LOC120564766
XM_039810008.1 mRNA upstream 17807 15419252 ~ 15424350 (-) True LOC120564766
XM_039803969.1 mRNA upstream 26911 15428356 ~ 15685639 (-) False sdk1a
XM_039803962.1 mRNA upstream 26911 15428356 ~ 15685639 (-) True sdk1a
TU6236 other downstream 491626 14901150 ~ 14904209 (-) False ubl5
TU6167 other downstream 676733 14712203 ~ 14719102 (-) True LOC120555938
TU5715 other downstream 1828569 13531753 ~ 13567266 (-) True G4168
TU5472 other downstream 2355601 13037280 ~ 13040234 (-) True LOC120560438
TU6504 other upstream 25099 15426544 ~ 15429556 (-) False sdk1a
TU6856 other upstream 944325 16345770 ~ 16347922 (-) True LOC120558720
TU7590 other upstream 2309201 17710646 ~ 17713898 (-) True LOC120560175
TU7616 other upstream 2429247 17830692 ~ 17835761 (-) False epn3b
TU7631 other upstream 2442491 17843936 ~ 17845404 (-) False LOC120556682

Expression Profile