RNA id: XM_039809928.1


Basic Information

Item Value
RNA id XM_039809928.1
length 4853
RNA type mRNA
GC content 0.43
exon number 16
gene id grk4
representative False

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 35493057 ~ 35542083 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTTGGAGGTGAAAAAGAGGTGGAGGAGGGAAGAGGAATGGTCGCAGTAAGAAATGGAAGGAGATGCTAAAACTCCCCCACATCAGCCAGTGTGAGGAGCTACGCCGCACTATCGAGAGGGACTACACCAGTCTGTGTGAGAAGCAGCCCATTGGTCGGCTGTTATTCCGTCAGTACTGTGACACCAGGCCAGAGCTGAAGCGCTGCATCGAGTTTATGGATACTGTGGCCATGTACCAGCTCGCTCCTGACGAGAAGAGGAGAGACTACGGACTGAATGTTTTAGACACATACTTTAATAATGGGTCGGCAGCCCATCTGCCAGCCGTACCCCCCGATGTGGTCGCTGGGTGTCGGGAGAGGCTGGAGCAGAGTCCATGTAAGGATCTCTTTAATGACTGCACCAAAATAGTTCGTGATTATCTGAGTGGAGCTCCATTTTCCTCCTACCACGAGTCCATATACTTCTCTCGCTTCCTGCAGTGGAAATGGTTGGAGAGGCAACCAGTAACCAAAAATaccttcagacattacagagtACTAGGAAAAGGTGGATTTGGCGAGGTTTGTGCCTGCCAAGTACGTGCCACCGGTAAGATGTACGCCTGTAAAAAGCTGGAAAAGAAACgagtgaagaaaagaaaaggtgaaGCAATGGCACTAAACGAAAAACGCATTTTAGAAAAAGTTAACAGTAGTTTTGTAGTTAGTCTAGCATATGCCTATGAGACCAAGGATGCGCTGTGCCTGGTGTTGACCATAATGAATGGCGGTGACTTAAAGTTCCACATCTACAACATGGGCAACTCTGGCTTCGACGAGCAGAGGGCCATCTTCTATGCTGCTGAGATCTGCTGTGGCCTTGAGGACCTGCACCGTGAGAGGATAGTCTACAGGGATTTGAAACCTGAAAACATCCTTCTGGATGATCGTGGACACATCCGAATTTCAGACCTGGGCCTTGCTGTTCAAATCCCTGAAGGGGAGACGATACGAGGGAGAGTGGGCACTGTTGGATACATGGCTCCCGAGGTGATCCAGAACGAGAGCTACACCGTCAGCCCGGACTGGTGGGGGCTGGGCTGCCTGATCTTCGAGATGATACAGGGCCAGTCGCCCTTCCGCAAGCGCAAGGAGCGTGTCAAGCGGGAGGAGGTGGACAGACGAGTGCGCGAGGACCCAGAGGAGTACTCTGATAAGTTCGCAGAGGAGGCGAAGGACATCTGCAGACAGCTCCTGGCTAAGGACCCCAAGGAGCGACTGGGTTGTCAGGGTAGAGGGGCTATAGAGGTCAAGCAGCACCCCATCTTCAGAAACATCAACTTCAAACGGCTGGAGGCCAACATGCTGGACCCTCCCTTCAGCCCCGATccccGGGCCGTGTACTGTAAAGACGTCCTGGACATTGAGCAGTTCTCCACTGTCAAAGGCGTGAACCTTGACCCCACGGACGACGACTTTTACCACAAGTTTGTCACAGGCAGTGTCTCCATCCCGTGGCAGAACGAGATGATTGAGATGGAGTGCTTTAAAGAAATCAACGTCTACGAGACTGACGGGACGCTGTGCTCCGATCTGGATGTGAACCGGCCTAATCCTCCACCAAAGAGAGGCTTCTTCTACCGCCTGTTCAGAAGAGAGGTCTGTTTTAAGAGCGGTTACAGTGACGACGAGATCGAAGAGCCCTCGCGACTTTAAACCACTCCCTCCACCTGCCTCctcttcccccccctccccctcgcCGCTGAACTTCACCACAAACTCCAAGCAAGCGCAAATCTTAGGAACTCAGTGAATGTTGACCTGTATTTATGAGCTGTATTAAAAGTGTAttataattaaagaaaaaagtatgaGTTTAAAGATTTTGTACATTTGTACTTGAATTTATGTCTAGATGTATATTTTCACTAAAGGTTGTATTGTACAAAAAGCCATAAAAGTACCACTTGAAtgcatacattacatttttatttcctttattttattttggaatGAGTATGgacaatttgttgtttttttttgttttttttaagaagcaCAGTaccagtagtttttttttttcttcttctttcttttttttctcaatgtaGCATAAggcctttttgtttttacatgtgCTGTATGTTTGTCATTGATTTAGCCAACGTGACGTGTTGTTAGCATATCAGATCCACCTGGTTCCCAAACTAACCCTTAGCCTCTGCAGGCTCAGGTAGATCTGAATGATGTGCATAGATCCAAATGGTATTGGTGGAAAATAAATCCAGTCTAGCATTGCTGTGTTGATGCTATGCTGCTAAAGCCTTCCCCATATGTTTCCAAGATCTGCCACTTTGATTTAAATTAGTTTGAACGTGATAATCCACATCTTTCCCTCAGCCCAGTTAGGCAGGTTGCACTGGACTGTATGACGTGTAGTGAACTGTCTCCAAGGGGCCTTTACCAACTTAATTCTAGTAGAGATGGCATGGATCAGCATGTGCAACAATTAGTATTTTAAGGAAATATTGCGGAGGCTTTTTGTTTTGGTAATACAAGGCCTGATCATTATCATTCCTGGACCTCTCAAAAATCTCATGAGCTGCAAAAGGCTCAGATCGTTATTTTAGATGCCAGACTGTTTCCTTCGGGAGAACAGCATGTTAAGTAAATGTCTGTTACATTATTCACTCAGGCAAAACAATTTTTTGGTTGTTTATCTTTATTCCTCAAACTTggttttctgcttctttttgtgTAATCTGTCACCCataatttttttgtgtaccAGAAAGCCTAGGACAGGTTGAGTTGGAACATAGAGacttatgatgatgatgatgatgatgatgatggcacTGTATAAGAGATCTGACCTGGGGCTGAAAACAAATTGCCATTGCATTAAACAAGCTTACAATGATTCAGCTGTCAGCATCCTCTGCGCTGACTTGAGATACAGCCTGCTTTGGCCTCTGTGCCTGTTGATCATAGATAGCACAAAGCCGGTCGGCCACATGTCCTGCTAGTAGACCTCCAGTTAGACCCTGTGGCTTTAGCTGTGTTTGTACTAGATGAAAATAACCTTTCTTAATCATAATAGCAGCTGCCTTTAACTATTCCATTGAAATCTTGTATGTTCTGTCATAAGAATGACTTGAGACCGTTGCTTGTATGTGTGTAGACAGGGAGGAACAGGGGCATaatggttattattattattatcctgCCTGCAGAGTTACTATCATCCAGTGTACAAAAACACTCGCCACTTGCAGTTGTGCACTTTTGTTTCATCATAGAAATGTTTCCAAATTAACCGATCCtgaacaaatacattttctgtacATTTCCCAGCATGTTCCAATCGTTTGTTTTCATTGGCATTTCAGAGGCTTTTGAAGCCATATTGCTTTTGAATTTTGGTTTTTAGTCAGTTGCTGTTTACTCCCACCACCACCTGTTTTTAATGCTGTGAATACCCAATCTGGACGTGACAATACAATAGCTAGAAATCATGTAAGGACTTGAATGTCACTTAATTGATTTTCCAACCCTTCAAGACCGCTTACATTTAAAATGGTACGCGTGGAATTCCCCATCTCATTTACTAATTTGGAGACTTGGCCTGTTCTATAATATTGTCGTCCCCTGTTGCACATTCCATTTATCAAAAATCAGGATTCGAATGTGTGCATCTGTTGCCGGCTTGACGTCACCCGAGTGTCTGTTcgtttttttgttgctcttGGGCACATTTTGAAGCAGATTTCTCTTGCCTATGTAGATTTTAGCCTTTTAGCTCTTTAGCCTCAAAAAAACCTTGTAAATGATGTATTTCTAACATGTAACTAAGCTCtaacacacattcattcactcTCACAGGGAAACTAAACTGTGTTTGCCACCCATGCCTCTGCCATTGAACTTTACTCTTATACCATCCATACAGCAGTAAAGATATTCTGTTTAGTTTCATTGCACTATGGTGTGTTTTGACAATGACTTTAGGAAGTGTCTTTAACTATTTTTGCCAATGATACCAAAAGCAACATTAAGTAAATCAAACTTGTCTTGTGATCGGAAACATTTACTGAAGAAAGACTGACCGCCTTTATTGTATGTGCCAATTACCAAGTTCAGTTCTGACACCCCGCCTTTTTTCCACCTCTTTATCATTCCGTCCATTCTGAGAGAAATTCCTTCACATAAAGGAACTTTAAACAACTCAACAGTTTTGAATGTCCGCACTAAGTGCATTGTAAtgcctgtttaaaaaaaaaaaaaaaaaatacatatgttttattaCTCAAGCATGTATCGGTTTGTAATACTTCAGGTTCCTTGTATATGTAAATGATGACCTTCTAGTGCCAACATATCTCACTGGTATCTGAGGACAACTTTATAAATGGCAAGGTGACCAGCTGAGTTGGCCCTGTTTGAATGCATGACATGCATTCCTTCTCTCCTGCCTTCCTCCAAGGCGGTGATGGTGAGTCTTCCCCCTTAAAACTGGGATGGCGCTCACCAATGATGTTTAGAAGTGAGAGATCCTCAGTTCcttgatgtcacttgagtctaGTTTTGGGATAAATGCCTGGAGGTTTTCCAGGGTTTCATACTCTTCTGTCCAGATTATATATCGGATAAGTGATATTTTCAAAGAAGGGAGGAACAACAAATGCATTATTGGTATTCAAACGTGGCCTGGGACTTCttgatttttcttcttttttttgtatctgtacAGTCATGTCGTTCAACCACTGCAGTCATTGTTAATTCTTGTACAAGTTGTATCACTGGTTGTTGTACCATATCTGACATTTGTAATTATGAAATAATACACTGCCATTTGTATAAAAATA

Function

GO:

id name namespace
GO:0038032 termination of G protein-coupled receptor signaling pathway biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004703 G protein-coupled receptor kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13476 lncRNA downstream 45787 35446928 ~ 35447270 (-) False rgs12b
TU13467 lncRNA downstream 88408 35403414 ~ 35404649 (-) True G9993
TU13464 lncRNA downstream 88408 35403464 ~ 35404649 (-) False G9993
TU13465 lncRNA downstream 88408 35403678 ~ 35404649 (-) False G9993
TU13430 lncRNA downstream 221005 35263045 ~ 35272052 (-) True G9967
TU13560 lncRNA upstream 16549 35557548 ~ 35558158 (-) True G10061
TU13562 lncRNA upstream 21914 35562913 ~ 35573444 (-) True G10063
TU13563 lncRNA upstream 21914 35562913 ~ 35567916 (-) False G10063
TU13565 lncRNA upstream 29907 35570906 ~ 35573444 (-) False G10063
TU13606 lncRNA upstream 110973 35651972 ~ 35652171 (-) True G10091
XM_039816470.1 mRNA downstream 698 35456939 ~ 35492359 (-) False htt
XM_039816420.1 mRNA downstream 698 35456939 ~ 35492359 (-) False htt
XM_039816398.1 mRNA downstream 698 35456939 ~ 35492359 (-) False htt
XM_039816389.1 mRNA downstream 698 35456939 ~ 35492359 (-) True htt
XM_039816482.1 mRNA downstream 699 35456939 ~ 35492358 (-) False htt
XM_039822414.1 mRNA upstream 43542 35584541 ~ 35586613 (-) False LOC120572869
XM_039796360.1 mRNA upstream 82905 35623904 ~ 35628892 (-) True prdx2
XM_039795211.1 mRNA upstream 147490 35688489 ~ 35691028 (-) False LOC120555967
XM_039795205.1 mRNA upstream 147490 35688489 ~ 35691028 (-) True LOC120555967
XM_039809084.1 mRNA upstream 191969 35732968 ~ 35739670 (-) False LOC120564231
XR_005640911.1 other downstream 15697 35477231 ~ 35477360 (-) True LOC120569607
TU13477 other downstream 92583 35398640 ~ 35400474 (-) True G9997
TU13113 other downstream 1035422 34452850 ~ 34457635 (-) True G9740
TU12854 other downstream 1974934 33497160 ~ 33518123 (-) False stox2a
TU12774 other downstream 2208977 33283078 ~ 33284080 (-) True G9488
TU13574 other upstream 43471 35584470 ~ 35586582 (-) True LOC120572869
XR_005640401.1 other upstream 403049 35944048 ~ 35969266 (-) False micall1a
XR_005640904.1 other upstream 670129 36211128 ~ 36211215 (-) True LOC120569591
XR_005640910.1 other upstream 671547 36212546 ~ 36212627 (-) True LOC120569604
TU13981 other upstream 693784 36234783 ~ 36243319 (-) False slc5a10

Expression Profile