RNA id: XM_039810110.1



Basic Information


Item Value
RNA id XM_039810110.1
length 6227
RNA type mRNA
GC content 0.47
exon number 7
gene id cnnm2b
representative False

Chromosome Information


Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 16460435 ~ 16508353 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


TGTCGCCTGTCTCGGGGACATCAGGGGAGGCACGAGTTGGCCCATAAGCCTGCGTTCGCGAGTCATCAGTGTCGGACACGTAGTGGGAACGAGCAGGTCCCGATGCACAAGTCACGGCAACCCTCGGCGGAGATGAAGGCGGACTCCGACTGGCTCTGATTTTTAAAAGCCCTTTTCATTCAGGAGGTTGGTTGCCAGTGGTTATCAATATGGCAGAGCCGTCATCCCAAGCACCCACCGCTGCAAAAATGGCGTCACTTAACCGGTTCCGAGCTTTGGCGATGATTTTCTTAACTGTCACCGGCTGTTGTGTCACCCCGACAAGTGGCAAGGAAGGGTCCGAGGAGACCGTCATCATAGGGCTCCGACTGGAGGACACGGACGACATTTCCTTCATGGATAGGGGCTACCTGCGGGTGAGTGAGCGGTCTCGGGTAAAATTAAGGGTGTACGGGCAGAACATCAACAACGAGACCTGGTCCAAAATCTCTTTCACGGAACATGAGCGCAGCCGGACTGTAGGGAGCATTGACAGCTCCTCGGGGGATAACCAGAGCCAAGAGGACTGGTCCGGCTTGCATCCCTGCGGTATTAGGACTTCGGATATAATTATATTGCCCAACATCATTCTGAATCGAAAGACGTCCGGAATAGTTGAAATTGAGGTCAAACCTCTGCGAAAGACAGAGAGGAGTAAAGCTTATTACCTTTGCATCGCCACCGCAACACCGGCCGTAGCCGGGATGCACGACCTGTGGACGGAGAACACCTGGATCTACCACGACGGGGATGACACCAAAGTGATAGtggtggaggaaaaaaagtttcTGCTGCCTTTCTGGCTCCAGGTCATCTTCATCTCCATGTTGCTTTGCCTCTCGGGAATGTTCAGCGGGTTGAACCTGGGGCTCATGGCTCTGGACCCCATGGAGCTCCAGATAGTCCAGAACTGTGGCACGGAAAAGGAAAAGAATTACGCCAAAAAAATAGAGCCGGTCAGGAGCCAAGGGAATTACTTGCTTTGCTCGCTTCTGCTTGGGAACGTGTTGGTGAACACCACGCTGACCATCCTGCTGGATGATATCGCCGGTTCGGGCTTGATTGCGGTGGTCATGTCCACCATTGGAATAGTCATCTTTGGAGAGATCGTGCCCCAGGCCATCTGCTCCAGACACGGCCTCGCTGTCGGGGCCAACACCATATTCCTCACCAAGTTCTTCATGCTGCTCACCTTCCCTGCTTCTTACCCGGTGAGCAAGCTGCTCGACTACCTTCTGGGACAGGAGATAGGAACCGTGTACAACCGGGAGAAGCTTCTGGAGATGCTGCGCGTCACGGACCCTTACAACGACCTGGTTAAGGAGGAGCTGAACATCATCCAGGGCGCGCTGGAGCTCAGGACTAAGACCGTGGAGGACGTGATGACGCCGCTAAGAGATTGCTTCATGATCCCCGGGGATGGCACCCTCGACTTTAACACCATGTCCGACCTCATGAAGAGCGGCTACACGCGCATCCCAGTCTTCGAGGGCGAGAGGTCAAACATAGTGGATCTGCTCTTTGTCAAGGACCTGGCGTTTGTGGACCCGGATGATTGCACCCCTCTCAAAACCATCACAAAGTTTTACAGCCACCCGTTACATTTTGTGTTCAATGACACCAAGTTGGACGCAATGCTGGAGGAGTTTAAAAAAGGAAAATCCCACCTGGCCATAGTTCAGAGGGTGAACAATGAGGGTGAGGGAGACCCTTTCTATGAAGTTCTGGGTATTGTCACCCTGGAGGACGTTATTGAAGAGATCATCAAGTCAGAGATCCTGGACGAGACTGACTTGTACACTGACAACAAGACGAAGAAGAAAATCACCCATCGGGAAAGGAAGCAGGATTTCTCGGCCTTCAAGCCTACCGACAATGAAATGAAGGTTAAAATATCACCTCAGCTTCTGCTGGCTACCCTGCGTTTCCTAGCAACAGAGGTCGAGCCGTTCGCACCGGCGCAAATGTCAGAAAAGATTCTGCTGCGCTTGCTGAAGCACCCCAACGTCATCCAGGAGCTGAAATATGATGAGAAGAACAAGCGGGCACCGGAGCACTACCTCTTCCACAGGAACAAGCCCGTTGATTATTTCATCCTCATAATGCAGGGGAAAGTGGAGGTGGAGGCAGGAAAAGAGGGGATGAAGTTTGAAGCGGGGCCGTTCTCCTTCTATGGGATGCTGGCTCTGACAGCCTCGCCAGAAAATAAATCTCCTCCACGGCCGTTCGGACTCAACCACTCAGACTCCCTGAACAGGAGTGACCGTATAGACGCCATCACCCCGACTCTCGGCAGCAGCAACAACCAGCTCAACTCCTTCCTGCAGATCTACGTACCTGACTACTCAGTCAGAGCGCGCACAGACCTGCAGTTTATAAAGGTAACACGCCAACAGTACCAGAACGCGGTAATGGCGTCACGGATGGACAAAACTCCCCAATCGACAGACAGTGAGTTCACTAAGATCGAGCTCACGCTGACGGAGCTGCACGATGGAGTGGAGGCCCCCGCGGTCGTCACCACCACAGCCAGCACCACTGGCACCACCCCTGCCGTGTCCGTATCCGTGGCCAACGAGACTTCCTACCTGCTCAACCAGCAGCAGAACTGTGTGGGCCTCAGCAGGAGCAACCACAGCGCCCACAACGAGGGACCCATCTAGCCCCCGCCGAGCCCGGTGGAGACCCCGACCCTCCACCCTGTCTCGTGGACACACGGAGCGGTGGCGTAGATGGAGATGAGGGAAAATGGGGGAAGCGAAGGCGGGTGGAGGGTTCTGCTCCAACCAGTAGCCCccggtcagtcagtcagtcagtcagtcagtcagtcagtcagtggaACCCTTTCATGGAGGGGCAGTGGGGAAGACGGGTGCTGCGTCACCCTGAACGCCCCAACCTGAACGCTGTCAGAATCCCTGCTGTACTACACCCTCTTACAGAGGGTGCACTCGGACAGTACCTGTGACTGAGCTTCTATTTTGGGACAATCTGACACTTTCATAGCGGTGACTTGGACTAGAGGACGACAGAGTGCATGCAAACCCTGTCCCTTTCCCctaaacacaaccacacacacacacacacaacgtaaCGCAACACTCGCTGTATTTTCTCCTCAGGCCAAAGACTTTGGTCCCCCCTTCTAACACTGGACACAGACTGTTttcgctcacatacacacatattcaaaCAGTCACATtcccatatacacacacattcgcacacgaacacgcacacacacacacacacacacacacacaaatgcagctTCCCCACCCGTGAGTCTTTCAGGGATGCTCAGTCATTGTTGATCCCATCAGCGAGGACTCAAACCCAAACAAGCAGAGAGAACGGTTGGTCAAAGACTGCACCAAAAACCGCTTTGAAAGAATCCGTTAAACCACGAACCAAGAATGTTttcctgtatttatttattttataatattgtatgtatatatgtatgcgtGGAGACATGATATGACATAAAGTGGCATACGAGCATGCACAAGCATGTACACAAAGGTGTACGTGGGGCAAACGTGTCATATCAAAAAGGACATGCTACATATATGGAGACAAACATCCATTCATGTATATGAGGGGGTGAGGGTCTtttacagatacagtatgtatattACAGATCTTGTTATTTTTACTATTATCCTAAATCAGGCTTATGGTACACTATCTTTTTCACCTTTTAAACAATCACACTATTGCCTTTAAGAGAAATCatataattaattattttaacaAAGTGCAATGAACAGAAATTTATTTAAGAGAtgattatgataaaaaaaatcactgtaTTATAAATTGACAgatatatttgtatgtatgtactgtatgtatatgtatatttgttttttgaaaaatgcTAAACTGCAGCCATCCACAAGCAAAATTGTCCTTAgtcagtctctctttctccttgtctctttcaTGTTTTTGACCTCAAACACGTCTACTATACGTTCATGTGGGAGTAATGATGCCTGGACTATTCACCACGGtgtaggggggtggggggggggggctaccAGGTGGTGGAAGTGTCAACAAAGCACCTATGCATGTGGAGGCTATgtgtcttattttttatttttttttgccaattttAAGCATAATCAAACTTGATAATTGCACAGTATTAATGACCTCATCTAACATGTTGAGCATCATCAACGTCACAAAAAGTAACCTCGACATTAAACATGTCCATGAATGATACACAGCTATGCCTTTCcactgtttatgtgtgtgaacgtgtttttttattttattttttattttgcatgtgtgtctacaAAGCATAGGCCGGCAGTTCAGTTCATATAAAGGCTATTTTTTGACAGCAGTGAATGTGAAAGAAACTAGACTTTACTTGTTTTGGCTCCCCACACAATGCAGATAATCCATGTTTAATAATTCTTGAGTTAATTCAGATCAAAATCTAAAATATTCCTCACAAATGTTATGTTATTAAACAGATATTTATACTGATTTTATCTTAGAAACACTGTAGCCATATATGCTTATTTTTCTCACAATTTCAAGATCACACAATTAAAGAGTAGTTTGACATTACTGGAAATAAGCTAAATTGCGTTCTTGCTGACAGacaagaagattgataccactctcgtTTCTCTACTTTACGTTATGAAGCTACAgtcagcagccagttagcttagcctagcataaaaactaggggggggggggtccaccGGTTTAAATAAATCCACCTACCACCATCTCTAAAGCTCATTAATTAgtccaggaagtcactgctccgggccaagaaatagtctggcacaTAACCCCCTCGAAAAACCACaacttgttgtttttaaacttaATGTTCTGCACATAAAAAGTTGTGATTTTTACAGTGTTACATGACTATTTCTTGGACTTCTGGAGAGACTGGAGTAGTTAGTAATCTTTTAGTCTGTATATGCTAAActgagctaagctaagctaacatcTCCTGGCTACtgcttcatatttaacatacAGACATTAGAGTGGTctcaatcttcttatctaactctagacaagaaagcaaataagtgtaaaTGTTAAactactcttttttttatttttattttattagattttttttttttttttgctttagtaCCTTCTTGCCCTTATTGTTTTACCTCATAAAGACAGGAATGATTTTGAAGATACTGTATTGCTTGGAATTTTTCCtaaagctacacacacacacacacacacacttctgtagGGGTGTAGAATTTTAATTATTTCGCTAAACAATTACTTTGATTGCACTTCCAGGCCTGTTCATTAACATTCTATGTACTACTGTGTGCTGGAAGTTTTCTGGCCACCTTACAGACAGCTGAATTCTTTTAATATTCAGTTGCAGTTTGTAACCACTGGTGGTCGCTGTTTCCACATGTaatccaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaaaggccCCCTGAAAACAGCACACATGGAAAAACAGCCTTTCCATCTGCTCAGCCATTAGGGGCGTCTCGGTTGTATAACCAGACAGAGAGTACTTCTGCATTGTTTGCAGCTGTGTTCGTTGTTGTTAATTGTTCACTTGAAAGTGCTCCGATGCAGCAGGCCCGCTCCTGCTCTGCAGGGACAATCGCTCCAGAGGTACAGCCAATGAACGAGGATCAGATTGTTAAGATTGTGCTTGGGacactcatactctgcttcacAGACTTCAGTGCCTGACAGGAGAACAAGAGGCACGATGAAAGTACAAAAGCCCAGGAACAGGAAACACATCCGCTAGCTGTGACTGGGTTATTTCAATATtctgttacacacacattatctttttcctctcacacacacttcatcCTCGGCTGAACACAAGATTATCATCCTTCCATTATGTGAATGCTTTGCAGGCGTGTGTTTGACTGGTCTTTTTGTCCATCCCAATGCTGCTATTGTACCCATGTGTTGTCCATAATGCTTCTTCTACCTTACGACAACATTCCCATTGCCTCCTCCAGCTGgtggtttaataaaaaagtgaATGATTAACAGACA

Function


GO:

id name namespace
GO:0030554 adenyl nucleotide binding molecular_function

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU6854 lncRNA downstream 107967 16350067 ~ 16352468 (-) True G5079
TU6857 lncRNA downstream 110452 16348266 ~ 16349983 (-) True G5081
XR_005639169.1 lncRNA downstream 114240 16345718 ~ 16346195 (-) False LOC120558720
TU6844 lncRNA downstream 134589 16325521 ~ 16325846 (-) True G5069
TU6843 lncRNA downstream 135112 16325015 ~ 16325323 (-) True G5068
TU6910 lncRNA upstream 140692 16649045 ~ 16651526 (-) True G5125
TU6930 lncRNA upstream 254015 16762368 ~ 16792849 (-) False G5140
TU6929 lncRNA upstream 280192 16788545 ~ 16843003 (-) False G5140
TU6927 lncRNA upstream 282038 16790391 ~ 16792849 (-) True G5140
XR_005640647.1 lncRNA upstream 408721 16917074 ~ 16920726 (-) True LOC120568012
XM_039785719.1 mRNA downstream 28351 16427498 ~ 16432084 (-) True inab
XM_039799762.1 mRNA downstream 50422 16403910 ~ 16410013 (-) True taf5
XM_039799748.1 mRNA downstream 58032 16383786 ~ 16402403 (-) False pdcd11
XM_039799732.1 mRNA downstream 58032 16383786 ~ 16402403 (-) True pdcd11
XM_039799739.1 mRNA downstream 58036 16383786 ~ 16402399 (-) False pdcd11
XM_039810171.1 mRNA upstream 548 16508901 ~ 16516400 (-) False as3mt
XM_039810163.1 mRNA upstream 548 16508901 ~ 16516400 (-) True as3mt
XM_039810142.1 mRNA upstream 8147 16516500 ~ 16537516 (-) True wbp1lb
XM_039810150.1 mRNA upstream 8147 16516500 ~ 16531383 (-) False wbp1lb
XM_039810131.1 mRNA upstream 29302 16537655 ~ 16545278 (-) True poll
TU6856 other downstream 112513 16345770 ~ 16347922 (-) True LOC120558720
TU6504 other downstream 1030879 15426544 ~ 15429556 (-) False sdk1a
TU6236 other downstream 1556226 14901150 ~ 14904209 (-) False ubl5
TU6167 other downstream 1741333 14712203 ~ 14719102 (-) True LOC120555938
TU5715 other downstream 2893169 13531753 ~ 13567266 (-) True G4168
TU7590 other upstream 1202293 17710646 ~ 17713898 (-) True LOC120560175
TU7616 other upstream 1322339 17830692 ~ 17835761 (-) False epn3b
TU7631 other upstream 1335583 17843936 ~ 17845404 (-) False LOC120556682
TU7664 other upstream 1371515 17879868 ~ 17881759 (-) True LOC120556582
TU8084 other upstream 2376615 18884968 ~ 18890220 (-) True G5930

Expression Profile