RNA id: XM_039810150.1


Basic Information

Item Value
RNA id XM_039810150.1
length 3594
RNA type mRNA
GC content 0.44
exon number 4
gene id wbp1lb
representative False

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 16516500 ~ 16537516 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agaaagagagggaggcagggagagggagtgagagtaTGTTTGAGAGCTGTTTGACTTCTTTTCTGGGATAATGACCCAGGAGGTTGGAGGGACTTGTCTGGGATTTTTGGACCCTGGATCATCATGCCTCACAATCTGGGACCTGTGCTGAGCCTACTGCACTGTGAAGGTATTAACAACCAGAGCTACGTCTGTGAGTCCGGACACTGCTGTGGGAAGTCCCAGTGCTGCAGCTACTACTATGAGCTCTGGTGGTTTTGGTTGGTATGGGCAATCATCTTCATTTtgagctgctgctgtgtgtgtcacCATCGCCGCACCAAACACCggctgcagcagcaacaacggCAGCATGAGATTAACCTCATCGCTTACCGCGAAGCACACAACTACCCCTCTGTGCCCTTCTACTTCAGGTTTCTGCCAAACTACCTCCTGCCTGACTACGAAGAGGTGGTCAACCGGCCACCGactcctccccctccctacaGTGCCTTACACACAGGCCCATCATCAGTGGCTTCTAGTCCACTGGCTCCTGAGCAGCAGGGGAGACACTGTCCAACCATCCAGCCCACTCCGGTGCCCCCGGTCTCTGACAGTCTGTGTTGCAGACCCAGCACAGAGGAACCACAAACCCCCACCTTAGACTTGAGGCCAAAGCCTGACAACAAGCCCATGCAGACAGCACAAGATTCAGGCATGATACTGCTGTCAGATGGGCTCAGTAGGGAGGGACTTACCAGCCAGGAGAAAAGAAGTGAAAGTGGGGACGACTCCTGCAAGGACCACCTGCTAAAGGACCCGTCAGAGGGTTCTGCTGAGGACAAAGACCGACTCCCCAATGGAAGGAGGAGGCGATTCACAGGTGACTCTGGgattgaggtgtgtgtgtgcggcacACGTGGGAGCAGCGGTTTTAGTGGAGCTGGAGGGACAGGCCAGGAAGGCAAGGAGTTGAGGGAGCTAGAGAGCCTGCTGGGGCACGAGGGAGACgacaaagaggaggaggaagaggagggggaggaggcggGCGACTTCTGCGACAGCTGTGGCCATCGTGCCTCCTTCAgtggggaggaggagcaggCGCTGGGCGGGCTGGAGAGGCGGGTCGCACGTGGGCCGTCAGGATCTCCTCAACCGGCTCAGCAGATAGGCAGCGCCTCGCTCCACCCTCCAGTgtgcctcctcctccacaccATCAACGAGCAGGAGGGACCGCACCACAGCACCAGCACTGAGCCGCAAGGCTGAAACACAGTCAGCACACCTTTGTTTcatagagagaaggagagagagcacTTGAGACAGAGAATGGAGGCATATGCGTTTGTATCTGAGCAAATGTTTTATGACTAAATACTTTCTGAGTGAGTAtttttatgaatgtgtgcatCTTTGATAAAACAGGGGTGGGAGCAGGCGGGGGAATGTCAACTAAATATGAGTCAGATCCAAAGGTTGAGAAAGCCTTCTCCTCCCCACACTGGAACAGTGGCCTTAACCTGTGTATTATGAGTTATGTTTGGGCAATTGAAGCCCTTTAACAGCCTGTGTCAattgagaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagagtgtctTTCAGTTGTCCGTCTCATGCAACGGAAGCTACTGACACAGTCTGAAGCTGTGACGACAGGACATTAGGTGCCCAGGATGAATGCAGCCTTCCTCACCGCCGGGTGCTTGCAACAGTTCTGCAAAGCAGTTCTCTGCAGGCTACACCTACACTACAGTACgtagtgacaaaaaaacatagcaGGAACATTTTGGATAAGTGCAATGTGCATTTACCACAGTGTGTGCTTATGCAAACTGATACTGTACAGGGACACTAGAACAAGACTGTGTGGGATGTCCCGTACATACTTCTAGTGCTTTTCAGCGTTTAAAAAACCGCTCTGCCTTGGCTGTTTTTGTTGCTCTCTATTTGCCCTGCTAGTGATAGAGAAGTATAAGTGCATTTACAAATCTTGATGTGAGCAGTTCCTATTTTGCACAAAGTGTATTTATCTTTATAAATGAGCTTTTAGctaaacaaatcaaaacagaAAATGCTTTCATTAATTCAGTCTTAAATCGCAGTACATGATTTAGTGTGTTAGGGTTTTGTTACATCTGTAAGAAATGGACCTCTGTTGATTGTTATGGAATGCAACCGATTCACTTTGTACacaatcattttaaaatgaatgactCTTTGTAGTATGACTACccagaaaaatgcagaactTTGATGAACAATGATAAGTTTCTTAGAGATTATAACTGAGATGGGCAACTTCAGACCTCAAACTTTGGTGTCACAAATAGTTTACCGCCTAAACCCACTATACAGTATAAAATGCTCCTCCTCCTGTTGAGTTGACAAATACATCTTACGGGACTTAAGTTTTAGTTAATTTagtttgaattaaaaaaacacagaaaaaaagcataGATTCAGATAAGGTAATAAAATAAGTTTGATAGTTGTCCTTGGCTTTTCTTAATATCCAAATATCTATAAATAAAGAGTTTTGCACAACAGGTTTTTTGTTTTATGGACAAACAATACAATAAGTTAACAAGCAATATTTATAATGTTATATACCAAATAGTTCTGTTAATGTATCTTCTCTGGAAGACTTAGTTTGAAACGCCTTTAAGAgcttaaatgttttaaatccaACCTTAATCCAAATCTTACAGGGGCTGTTATAGATTAGATGTTGATGATGAATGGGCCATGGAAAATGCTATGAGCGTGCTGTGTGAAACTTACAAATTAAGTGAAATTGTAGTTTTCCCACTCTCTGAAATTAATTGGAACTTGGTGATGCTACATTTCATTGTCATGCACGTGTTCTTTTTTCCGATTTCCTCGTAGCACCCTAAAAAATGCACACATTGCAATGTCTGCAAAGCACAAATGTTTCAGTCATTGGTCTCACAGATTTCTATATAGTTGAAAATGTAATGTGAACTTTATGTATTAGCAGTAAGATGATTGAATCTTACACATCAATGTCTGAACACACTCTAAAATTCTTTATATGTTAATGCTTTTTGTgagctagaaagtaatattgtGTGATTGTGGTACATGTAACCAAGACAAGCTATTTTCATATCAGCtgaatcctttaaaaaaaatattggaaCTGTATACAATTTTAGAACCActttatatttgaaaatgtgTATAATGTTCTGTCACATGTTTGCGAACCAAATAGTtgctttcatattttttatgaaaTCATTAGCTTTATTGTTATGGtcggattttttttctcatggttatttttttctgttagaaaaagattttttttaaataacttatcCTTAAGTTGTGTGAAGGGTACGTTTTGACTAGTAGATAACTTGTTAACTTGTCAGGGGCATCTTgccaaagacacgttttctttcTTCACCAGTGTGTGTAAGGTGGTTTTGCACATGTCCTTTGAATGTTCTGATCATAACATAAGCCATTTATTACAGCAAccaatatggatgtattttcAATAAACATGCCCTTTTAAATTCA

Function

GO:

id name namespace
GO:0006261 DNA-dependent DNA replication biological_process
GO:0006281 DNA repair biological_process
GO:0003887 DNA-directed DNA polymerase activity molecular_function
GO:0003677 DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6854 lncRNA downstream 164032 16350067 ~ 16352468 (-) True G5079
TU6857 lncRNA downstream 166517 16348266 ~ 16349983 (-) True G5081
XR_005639169.1 lncRNA downstream 170305 16345718 ~ 16346195 (-) False LOC120558720
TU6844 lncRNA downstream 190654 16325521 ~ 16325846 (-) True G5069
TU6843 lncRNA downstream 191177 16325015 ~ 16325323 (-) True G5068
TU6910 lncRNA upstream 117662 16649045 ~ 16651526 (-) True G5125
TU6930 lncRNA upstream 230985 16762368 ~ 16792849 (-) False G5140
TU6929 lncRNA upstream 257162 16788545 ~ 16843003 (-) False G5140
TU6927 lncRNA upstream 259008 16790391 ~ 16792849 (-) True G5140
XR_005640647.1 lncRNA upstream 385691 16917074 ~ 16920726 (-) True LOC120568012
XM_039810171.1 mRNA downstream 100 16508901 ~ 16516400 (-) False as3mt
XM_039810163.1 mRNA downstream 100 16508901 ~ 16516400 (-) True as3mt
XM_039810110.1 mRNA downstream 8147 16460435 ~ 16508353 (-) False cnnm2b
XM_039810131.1 mRNA upstream 6272 16537655 ~ 16545278 (-) True poll
XM_039810191.1 mRNA upstream 18860 16550243 ~ 16554220 (-) False fgf8b
XM_039810183.1 mRNA upstream 18860 16550243 ~ 16554220 (-) True fgf8b
XM_039809573.1 mRNA upstream 45831 16577214 ~ 16595649 (-) True slc2a15b
XM_039809583.1 mRNA upstream 132456 16663839 ~ 16667306 (-) True krt94
TU6856 other downstream 168578 16345770 ~ 16347922 (-) True LOC120558720
TU6504 other downstream 1086944 15426544 ~ 15429556 (-) False sdk1a
TU6236 other downstream 1612291 14901150 ~ 14904209 (-) False ubl5
TU6167 other downstream 1797398 14712203 ~ 14719102 (-) True LOC120555938
TU5715 other downstream 2949234 13531753 ~ 13567266 (-) True G4168
TU7590 other upstream 1179263 17710646 ~ 17713898 (-) True LOC120560175
TU7616 other upstream 1299309 17830692 ~ 17835761 (-) False epn3b
TU7631 other upstream 1312553 17843936 ~ 17845404 (-) False LOC120556682
TU7664 other upstream 1348485 17879868 ~ 17881759 (-) True LOC120556582
TU8084 other upstream 2353585 18884968 ~ 18890220 (-) True G5930

Expression Profile