RNA id: XM_039810183.1


Basic Information

Item Value
RNA id XM_039810183.1
length 1416
RNA type mRNA
GC content 0.48
exon number 5
gene id fgf8b
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 16550243 ~ 16554220 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCTTATAGAGGGACAGCTGTAGCATCACAGCTTAAACTGCACACCAGCAGACCAATATATCCGTGTTGGTACTTGTGGAATTCAttcaacattttctttctttaatcactttttattattattttttttaattttttttaggaAATTCACAGCGCGCATCTGCCCGCTGATGCGTAAAGATCTGTGCGTAAATAATCGCCACTGCTCTGTCATAGAATGTCAGAGAGGATTTATTTCGACTTGAAACCCCAATCAAGAGCTTCATTACATGACCGAGTGATTGACATGGAGAGGATTTGATGGAGGTGGTTTGGTGACAGGggctttttatatatttttttcttccggACTTTCAGTTTGGATTGGCACCGCAGCGCCTTTTAAAccttttggacttttttttaatatttcagtAGAGAGGAGAGTGGATCCTGTATCTGCACGGGACCCTGACAGTTCGGGATCTCTTGATTGTCACGGCTATCACCTTCTATGTGTCACAAGAGGGGGATTAAACTGAGCTGAAATCACCCATCAGGAAGAACTTTATTTCCGAGAGCTTCCAGCAGCGAATCAGTGGAGTATTCATGAAGCAATATTTGAACTATTACAAGATGAGGCTGAGAACATCGAGGTTAGGTTATCTGTTACTTCAGTTCACGGCGCTTTGCTTTTACGCACAGAACACTGTGCAGTCCCCTCCTAACTTCAAGCACCATGTCACCGAGCAGAGCCGGCTGTCGGACCGGATGAGCCGCAGGTTGACACGAACCTACCAGCTGTACAGCCGCACCAGCGGGAAACACGTCCAGGTCCTGGCCAACAAGAGGGTCAACGCCAACGGAGACGACGGAGCGGTTCACGCTAAACTGGAGGTGGAGACGGACTCTTTTGGAAGTCGTATTCGCATTAAAGGGGTGAAGACAGGATACTACATATGTATGAACAAGAGGGGGAAGCTGATCGGCAAGCGGAAAGGACGAGGCAAAGACTGCATCTTCACCGAGATTGTTCTGGAAAACAACTACACGGCGCTGCAGAACGCCAAGTACGAGGGCTGGTACATGGCTTTCACACGCAAGGGCCGTCCGAGGAAGGCCTCCAAGACCAAGCAGCACCAGAGGGAGGCCCACTTCATGAAGCGTCTACCCAGGGGGCACTTGCTGGGCGAAAGGAGACCGTTTGATGTCCTTCCTCTCCGTGTCCCCGCACACCCTTTGAGCAAGCGGACTAAACATTCCCATCACCAGCGCCCAGGGGGCCGCTGAGGACTGAAACCACTGAGGGAGAACTGTGGACGAACCAACACAGAGAAACCACTACAAGGGAAAACAAGTGCTCTCAGAGAAATTAACTTTTACAGTCAAGTGCCCATACACTTTTTGCCTCATTTTGTGACCTTTGTGTAATTCTTTG

Function

GO:

id name namespace
GO:0008543 fibroblast growth factor receptor signaling pathway biological_process
GO:0005576 extracellular region cellular_component
GO:0005104 fibroblast growth factor receptor binding molecular_function
GO:0008083 growth factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6854 lncRNA downstream 197775 16350067 ~ 16352468 (-) True G5079
TU6857 lncRNA downstream 200260 16348266 ~ 16349983 (-) True G5081
XR_005639169.1 lncRNA downstream 204048 16345718 ~ 16346195 (-) False LOC120558720
TU6844 lncRNA downstream 224397 16325521 ~ 16325846 (-) True G5069
TU6843 lncRNA downstream 224920 16325015 ~ 16325323 (-) True G5068
TU6910 lncRNA upstream 94825 16649045 ~ 16651526 (-) True G5125
TU6930 lncRNA upstream 208148 16762368 ~ 16792849 (-) False G5140
TU6929 lncRNA upstream 234325 16788545 ~ 16843003 (-) False G5140
TU6927 lncRNA upstream 236171 16790391 ~ 16792849 (-) True G5140
XR_005640647.1 lncRNA upstream 362854 16917074 ~ 16920726 (-) True LOC120568012
XM_039810131.1 mRNA downstream 4965 16537655 ~ 16545278 (-) True poll
XM_039810142.1 mRNA downstream 12727 16516500 ~ 16537516 (-) True wbp1lb
XM_039810150.1 mRNA downstream 18860 16516500 ~ 16531383 (-) False wbp1lb
XM_039810171.1 mRNA downstream 33843 16508901 ~ 16516400 (-) False as3mt
XM_039809573.1 mRNA upstream 22994 16577214 ~ 16595649 (-) True slc2a15b
XM_039809583.1 mRNA upstream 109619 16663839 ~ 16667306 (-) True krt94
XM_039804776.1 mRNA upstream 137467 16691687 ~ 16695377 (-) True LOC120561619
XM_039804739.1 mRNA upstream 148742 16702962 ~ 16705385 (-) True LOC120561596
XM_039817358.1 mRNA upstream 156544 16710764 ~ 16717109 (-) True LOC120569500
TU6856 other downstream 202321 16345770 ~ 16347922 (-) True LOC120558720
TU6504 other downstream 1120687 15426544 ~ 15429556 (-) False sdk1a
TU6236 other downstream 1646034 14901150 ~ 14904209 (-) False ubl5
TU6167 other downstream 1831141 14712203 ~ 14719102 (-) True LOC120555938
TU5715 other downstream 2982977 13531753 ~ 13567266 (-) True G4168
TU7590 other upstream 1156426 17710646 ~ 17713898 (-) True LOC120560175
TU7616 other upstream 1276472 17830692 ~ 17835761 (-) False epn3b
TU7631 other upstream 1289716 17843936 ~ 17845404 (-) False LOC120556682
TU7664 other upstream 1325648 17879868 ~ 17881759 (-) True LOC120556582
TU8084 other upstream 2330748 18884968 ~ 18890220 (-) True G5930

Expression Profile