RNA id: XM_039810220.1


Basic Information

Item Value
RNA id XM_039810220.1
length 3689
RNA type mRNA
GC content 0.43
exon number 11
gene id LOC120564947
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 34390148 ~ 34400994 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAAGGAGGAGCAAACTGCACCTATTCATAAGGACAGCCTGGTAGGCCACTGCACAGTCTATGCTGcacccacacatacactgtAGGCTATTATTGTACATACGGCAGAAACATGGCTGTACTCGGGAGTTACTCGGCACCTTTACTTGGAATCAGCATCTTCATCGCTACTCTGACCTACATCACCTACAAGCTGCTCAGCGGTTACCTGCACAAATGGTTCACGATGAAGCCTATTCCTCAGGCCGACGGAACACATATCTTTATTGGAAATGCATTCCAGTTCAAATACAATGCgggagatttcttTCAGCAAATTATGGACTTCACCCGTGACTTCGCGAACGCTCCGCTATTTAAACTCTGGATCGGACCAATCCCATTTGTGATCCTGTTTCATCCTGAAACAGTTGAGACGGTTCTGACCAACGCTGTTCACATGGAGAAATCCTATGCGTACAAATTCCTCCACCCTTGGCTTGGAACTGGCCTTCTTACTAGCACTGGCCTTAAGTGGCGTCAGCGGCGGAAGATGTTGACCCCCACCTTCCACTTCTCCATCCTGACGGACTTCTTGGAAGTGATGAACGAGCAGGCAGAGATCCTGGTGCAGAAGCTGGAGAAGCAGGTGGGGAAGGGTCCATTCGACTGCTTCAGCCACATAACCCTGTGTGCCCTGGACATCATCTGTGaaactgcaatggggaaaaaaatttaTGCCCAGAGTAATTCTGACTCGGAGTATGTTAAGTGCGTGTACAAAATGAGTGACATTGTCAGCCGCAGACAGAGGTCTCCTTGGTTTTGGCCTGACTTTGTGTACAGCTACTTTGGTGAGGGTCGGAAGCATGACAAGACCCTCAAGATCCTGCACTCCTTTACATACAAAGTGATCCATGAAAGAATGGAGAACATTTCCTATAATGAATCAGACAGCGACTCTGACAAGGGCACGAAGAAAAGACGAGCATTTCTGGACATGCTCTTGAAGACCACATATGAGGATGGCAGCAAAATGAGCCATCAGGACATTCAGGAAGAAGTGGACACCTTTATGTTTGAGGGACATGATACTACAGCAGCCTCTATGAACTGGACCATACATCTGCTGGGCTCCCACCCTGAGGCGCACAGGAAAGTTCAACAAGAGCTTCAGGAGGTCTTCGGTACATCTGACCGGCCCGTAAACGTAGAGGACCTGAAGAAGCTCAAATACCTGGAGTGTGTGATCAAGGAGGCGCTGCGACTGTTTCCCTCTGTGCCTTTCTTTGCCCGCAGCATCGGTGAAGACTGCCacatcaATGGTTTCAAGGTACCCAAAGGTGCCAATGCCATCATCATTACCTACTCTCTCCACCGTGACCCGCGGTACTTCCCTGAGCCCGAGGAGTTCAGGCCTGAGCGCTTCCTGCCTGAGAATTCAGTGGGAAGGCCTCCGTATGCATACATCCCCTTCTCCGCTGGACTCCGCAACTGTATCGGTCAACGTTTTGCACTTATGGAAGAAAAGGTGATCTTGGCGTCCATTCTGCGTAACTTTAGCGTTGAAGCTTGTCAGACACGTGAAGAGCTGCGGCCGTTAGGAGAGCTCATCCTGCGACCAGAGAAGGGCATCGTGATCAAACTGGAAAAGAGGACACCCCCAACTTCATCAAACTAGCAGCTGCTCAGGTTCACAGAAGCTATTTTCTAGATTCCCCTTCCTTCGTGGCCTTTATTCACAGAACATCCTGCCCAATTCTAATGGTGGTGGATACTGTGATCGTTTCTAAATACTCTTAGTAGTgaccagggttcaaaattaactttttcgtccaccagccaaatggctagtgaatgctTACTTTTTACCAGCCAATCAATAgataagggactgttcgttactTATTTAAGGGGCTACCGTAGGAGTTACGAtatctttagtcaaaatagacttgaccctcccttTGCCAGCGatacatttttctatgaccctttCTATGTTTGGGAAAAGAGGCATCCCCAATAATTTAttgatgccttctgtactggttcGAGCTTGGCAAAGATGTACAGATAGCCACTGCTTTTTTTACAATCATGACATATGCCTTACCaccaatttccaccaactgcggaacgtctgcggatctgctccggaacggcggcggagtcaataggtttccattaaagtcaatgtgtgtattttcactgaCTGCAGAATGAGTCCATTAAGCAAAGCACAATGGGTAacaaattcaacacacaaactggttgctatggactcgtcactaggcttcctcagtcattgtatattttagcatatagGTAAATAGGTAAAGCTGCcaaagctgaacattatccaaaactccatttctcagacgATCGTCAATTTGGGAGCCtgcatgctaccactccttccttctcaaattccttgaaaaggctgtcgtttgcacaatttctcaaaacatgttgggtgaccctcccctcaataaagaataaacagacatgaccctcccctattttcctccggtggtccattccataaatactgaACAGTCCCtaagcatttttgttttttgggttggtgagtgaagcaaatctaccagccacttgcatattttaccagcatttggctaggaGATGGTGATCATTTTGAACCCTGGTAGTGACCATGGTGTTTAAACTTTAGAATCTACTCATCATTGTGGTCATAATTACATAATTACAAAAACTGAATCACATGAAAATAAATTGAGATATATCTTAATATAGTTTTAGGGAAATAACTACTGTGCATTGCATATTCTGATACACTATTCTGGGTCCGTATGTCAACAACTCTGCACTCTAGAAAAAAACTATTCAAATATGTTATTTAGTGTAAGTAATGAAATGCTTTAAACAGCTAAGCAATGATAGCATTTGGGTATCAAATGAAAAGCCTTAAAAATATAGCATTTGCAGAGTAAGTGTGTGTTAGCTTAAGAAAACGACCTGGTCATTTTAAAACTCATTAGTGACATGAATGGTGTTAATTTCATTCATTGCAATgccttaaaatgttttatttttttaatttgaagaaAGAGTGTATGGTATATGGATGATTATGAGATACATTTTGTGCAGAGTAGGGCTTAATAACAATCATTCAcaattttacatacagtattcaTTACATTTACAAACTCCACAAGAAAGACAAGCCTTTCATTTGTGCAGCATTTCCTCTGAATGTTCATTTTCAAACATCTAGCTGCAGTTTTTGCTTGTATGACCTCATACTCAGCTACTACAGTTTTCTTTATGAATGTATTGTGTATGATATGTTTGATAGATCATCTACGTACAGTACTGTTTatctctctgtattttttttgtgtaagtCCAACTGGGAAGGACAGTTTGTGTAACTGAAGAAGTgtgatgttggaaaaaaaattatatatatatatataaacaattaAATGTTGCTCACACTTGTATTTCCAATTCAATCCAAAAGCTGTGTTCATTGACATAGAATAAATCCCAAACCAACTCCCAGAATCCCGAACCCTGACAACAATTGACTCATAACGCTGCTATGTCTGATGTGTTAGCAAAAATGCCAACGTACtgtacacatccagcagacacaaaaCAGCAGTTTCCTCCCATTGGAGTTCTCACTggacttttaaaataaaatatctgggtcttaaatca

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0004497 monooxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K07427 CYP4V; docosahexaenoic acid omega-hydroxylase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13102 lncRNA downstream 24870 34365016 ~ 34365278 (-) True G9732
TU13100 lncRNA downstream 34822 34355008 ~ 34355326 (-) True G9730
TU13050 lncRNA downstream 60183 34329717 ~ 34329965 (-) True G9695
XR_005639709.1 lncRNA downstream 119684 34264560 ~ 34270464 (-) False LOC120562219
XR_005639708.1 lncRNA downstream 119684 34264560 ~ 34270464 (-) True LOC120562219
TU13118 lncRNA upstream 61964 34462958 ~ 34468183 (-) True G9745
TU13121 lncRNA upstream 73178 34474172 ~ 34478450 (-) True G9747
TU13146 lncRNA upstream 129349 34530343 ~ 34532004 (-) True G9770
TU13256 lncRNA upstream 279547 34680541 ~ 34685004 (-) False G9836
TU13257 lncRNA upstream 281176 34682170 ~ 34685004 (-) True G9836
XM_039799815.1 mRNA downstream 785016 33592642 ~ 33605132 (-) True frg1
XM_039812116.1 mRNA downstream 801107 33580853 ~ 33589041 (-) True asah1b
XM_039787194.1 mRNA downstream 838591 33548703 ~ 33551557 (-) True sart1
XM_039787275.1 mRNA downstream 838621 33548703 ~ 33551527 (-) False sart1
XM_039810334.1 mRNA downstream 842765 33541549 ~ 33547383 (-) False LOC120564990
XM_039811009.1 mRNA upstream 4058 34405052 ~ 34411361 (-) False tlr3
XM_039810998.1 mRNA upstream 4058 34405052 ~ 34411360 (-) True tlr3
XM_039805730.1 mRNA upstream 115793 34516787 ~ 34521757 (-) True npy2r
XM_039804103.1 mRNA upstream 126059 34527053 ~ 34529098 (-) True LOC120561135
XM_039798458.1 mRNA upstream 155979 34556973 ~ 34560875 (-) True LOC120557822
TU12854 other downstream 872025 33497160 ~ 33518123 (-) False stox2a
TU12774 other downstream 1106068 33283078 ~ 33284080 (-) True G9488
TU12680 other downstream 1255228 33092460 ~ 33134920 (-) False G9418
TU13113 other upstream 51856 34452850 ~ 34457635 (-) True G9740
TU13477 other upstream 997646 35398640 ~ 35400474 (-) True G9997
XR_005640911.1 other upstream 1076237 35477231 ~ 35477360 (-) True LOC120569607
TU13574 other upstream 1183476 35584470 ~ 35586582 (-) True LOC120572869
XR_005640401.1 other upstream 1543054 35944048 ~ 35969266 (-) False micall1a

Expression Profile