RNA id: XM_039811009.1


Basic Information

Item Value
RNA id XM_039811009.1
length 3395
RNA type mRNA
GC content 0.46
exon number 5
gene id tlr3
representative False

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 34405052 ~ 34411361 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCTACTCGTTTACTTACGGTATGTATCTTAGCCCACACAGTGGTGAGTGTTGCAACACGAATTCTTCCATCGCTTTCCTTTTTTTACACGCGATTAACGACCTACATTACGGCGTAGAtacagtgtttttctttttgggtAACATCACTAACGCATGTCAGACTGTGCGTGACAACGACAACACGACATGGCCTGTTTGTTTACACCACGCCTTACTAAACAAATGAAGCGTTATCGGTCTGTCGAGCCTGGTTATATTAGCCTACATCAGCCACTGGGAATGTTTAATAGCGTCTACTCTGAAGTACTTCACACTGGGTCCAGTCTTTGAAGGAAgtttttgaaaAGATGCGTGCCCCTCGTTCCCTTCTCCCGTTGGTGATCACCATATGTTATTTTGTGGCGGGACCGCACAATTGCGTGGCATCCCCGAAGAAGAGTTCTTGCTATGTGCAAGACGGCAAAGCTGACTGCCGCCACCTCAGCCTCAGTGAGGTCCCTCCAGACCTTCCCCCGGACATCACCAGCCTGGATATGTCTCACAACCGATTAAAAGAGATTGACCCTGTGACACTAACCACATACTCAGGACTCCTCCACCTCAATATCGGGTACAACAGTATCGCCAAGGTGGACCCGGGTTTGTGCCAGACTCTGCCCCTGCTGCAGACACTGAACATGGAGCACAATCAAGTGTATGTGCTGAAGAAGGAGGATGTGAGCCATTGCACTAATCTAACACGGTTGTTTATGGCTAGTAATAAGCTAAAGCTACAAGGCGAGCCCTTCTCTGCACTACAGAGCCTGGAAGTTCTTGATGTTTCCATGAACAAACTGCATTCAGCTAAGCTCAGTTCTCAGCCTCAGCTGCCCAGCCTCGTGAACCTCAGTCTGGCATTCAATAACATCGCCACTCTCAAGAAAGATGATTTTTCATTTCTTAACCAATCGTTTCTACAATTGCTCAACATGTCATCTGTGCCCCTAAAAACGTTGGAGCCTGGTTGCTTTACGCCCATTTCAAGCCTCCGTACTTTGATCATGGATGGAAGCAGTATGGACACAACGGTTATTTCTAAACTCTGCTCGGAGCTGTCAGGGTCATCCATTGATGTTCTGTTTCTTCGGAAGATGAAGCTGATCAAGCTCACAAACACAACCTTCACAGGGCTACAGAAAACAAATCTAACCTTTCTGGATCTGTCCCGTAACGGCATGGTTGAAATTGAACCAGGCTCATTTCAGTGGCTGTCCAGACTTCTGACTCTAATTTTGATGGACAACAACATCAAGCTCCTGACCAAGGACACATTTCAGGGGCTCAAAAGTTTGAAAAAACTCCAATTGACAAAAGCTCTTGTGAGCGGTCATCACACACCGGTTATCGAGGATTTCTCCTTCCAACCATTAAGTGCTCTGGAAAGTTTGATATTACAGAGAACTGGAGTTCATGCAATCACAGAGTACACATTTACAGGCTTGACAAGCCTTAAAGAACTTGATATGAGCTGGAGTAGTTCAGTTACCTCACTCAGAAACATCACCAGCAAGACCTTTGTCTCACTGGCGCGGTCACCTCTCAGAAAGCTAAATCTAACAGGAACATCTATAGCACAGATTAATCCTGGATGCTTCTCCGTTTTGAGAAATCTCACCACTCTTCTTCTAGAGTTCAACTTTATCAAGCAAAATCTCACTGGCAAAGAGTTTGAAGGCCTGGGCCAGGTTGAAGAGATTCACATGTCCAATAACCAACAGACAGTCAATCTAGGCTCCATGTCGTTCGTTAATGTGCCCAAACTTAGGTTCCTGACTTTGGCAAAAAGTCTTAAAGCCGAAGCCGTGAACCTGGATCCCTCTCCATTCCGCCACCTGCCCAACCTCACCTTCCTGGATCTCAGCAACAACAACATTGCTAACATCAGAGAGAATATGTTGGAGGGGCTTGTGAACCTCAAGGTGCTGAAGCTCCAACACAACAACTTTGCCCGTTTGTGGAAGAGTGCCAACCTAGGTGGGCCGGTGTTGTTTCTCAAACACACACGGAGGTTGACAACCTTACAGATGGATTATAACGGGCTGGATGAGATCCCAGCAGAGGCTCTGAGAGGGTTGAGTGACCTCCGTCAACTCAGCCTGGCCAACAACCTCCTCAATAGGCTTAAGGACTCCGTTTTTGATGATCTGAACTCACTGCAGGTTTTAAATTTACAGAAGAATCTGATCACGGCTGTGAGGCCTGAGGTGTTCAAAACTCCTCTGAGCAACCTCAGGCGGCTTGTCCTAGACAAAAATCCATTTGACTGCACGTGTGAGAGCATGCTGTGGTTCGTGACATGGTTGAATGACACAAATGTGACCAGCGTGCCAAGTCTCAGGGACCAGTACATGTGCAACACTCCACTAGGGTATTTCAACCACTCCATCCTGGATTTTGACGGCCTCTCTTGCAAAGATATGACCCCATTTCAGGCTCTTTACATACTGAGCAGCACCGCTGTCATCATGCTCATAGTAACTGCGCTTCTGGTGCGGTTCCAAGGCTGGAGGATCCAGTTTTATTGGAACATATTGATCAATCGCACATTAGGATTTAGCGACGCCACAGTTGAAGAGGGCAGGGAATTTGAGTATGATGCTTACATCATACATGCAGATGAAGACAGCAGCTGGGTAGAAAGAAGGATGGTCCCCTTGGAGAATGACCAGTGCAGGTTTTGTTTGGAGGATCGAGATGCAGTCCCTGGCACGTCACAGCTTCAATCCATTGTGGAAAATATGAGAAATTCCAGAAAAATCTTGTTTGTTGTCACTGAAACTCTTCTCAAAGATCCCTGGTGTAGACGATTTAAAGCCCATCATGCACTTCACCAGGTCATTGAAGCCAGCAGGGACTCTGTGGTTCTGGTCTTCCTGCAGGACGTCCACGACTACAAGTTGTCTCACTCACTCTTACTCCGCAGGGGCATGTTGCGTCCTTGCTGCATCCTGGACTGGCCTGTCCATAAGGAGAGGGTGCCGGCCTTTCACCAGAAACTCCTCATAGCACTTGGCATGACTAATCGATTGCAGAAGTAACCCTATCCCATTGGTAGTAATGGGGGAATTTCCTGTGTAATAACTTCCAATGTATGTTCCATTATTACTAATTGCAACCAATTGCAGAttgttttgctctctgtgtgaatACCATGcttactgtatacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacactgtattctAACCTGTCATATTGTATTTACATTGCATTGCAGCTTTACATCAACAGAAATTCCAATAAAACAACACAGGtctgtttttttcaaatggtaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13102 lncRNA downstream 39774 34365016 ~ 34365278 (-) True G9732
TU13100 lncRNA downstream 49726 34355008 ~ 34355326 (-) True G9730
TU13050 lncRNA downstream 75087 34329717 ~ 34329965 (-) True G9695
XR_005639709.1 lncRNA downstream 134588 34264560 ~ 34270464 (-) False LOC120562219
TU13118 lncRNA upstream 51597 34462958 ~ 34468183 (-) True G9745
TU13121 lncRNA upstream 62811 34474172 ~ 34478450 (-) True G9747
TU13146 lncRNA upstream 118982 34530343 ~ 34532004 (-) True G9770
TU13256 lncRNA upstream 269180 34680541 ~ 34685004 (-) False G9836
TU13257 lncRNA upstream 270809 34682170 ~ 34685004 (-) True G9836
XM_039810220.1 mRNA downstream 4058 34390148 ~ 34400994 (-) True LOC120564947
XM_039799815.1 mRNA downstream 799920 33592642 ~ 33605132 (-) True frg1
XM_039812116.1 mRNA downstream 816011 33580853 ~ 33589041 (-) True asah1b
XM_039787194.1 mRNA downstream 853495 33548703 ~ 33551557 (-) True sart1
XM_039787275.1 mRNA downstream 853525 33548703 ~ 33551527 (-) False sart1
XM_039805730.1 mRNA upstream 105426 34516787 ~ 34521757 (-) True npy2r
XM_039804103.1 mRNA upstream 115692 34527053 ~ 34529098 (-) True LOC120561135
XM_039798458.1 mRNA upstream 145612 34556973 ~ 34560875 (-) True LOC120557822
XM_039824665.1 mRNA upstream 229843 34641204 ~ 34664220 (-) False fam193a
XM_039824733.1 mRNA upstream 229843 34641204 ~ 34664220 (-) False fam193a
TU12854 other downstream 886929 33497160 ~ 33518123 (-) False stox2a
TU12774 other downstream 1120972 33283078 ~ 33284080 (-) True G9488
TU12680 other downstream 1270132 33092460 ~ 33134920 (-) False G9418
TU13113 other upstream 41489 34452850 ~ 34457635 (-) True G9740
TU13477 other upstream 987279 35398640 ~ 35400474 (-) True G9997
XR_005640911.1 other upstream 1065870 35477231 ~ 35477360 (-) True LOC120569607
TU13574 other upstream 1173109 35584470 ~ 35586582 (-) True LOC120572869
XR_005640401.1 other upstream 1532687 35944048 ~ 35969266 (-) False micall1a

Expression Profile