RNA id: XM_039811094.1


Basic Information

Item Value
RNA id XM_039811094.1
length 2128
RNA type mRNA
GC content 0.54
exon number 5
gene id b3gnt2a
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 7158870 ~ 7223862 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

atctgaatacttcagCCCAGACTTGTAGATGTTAAATGTTGAGGATGGAGGGAAAAAGGGGGAGGTTGGTCTCCTCCCATTGAACCTGAGGGAGGAGTCTCTGCGCGCCGAGGCACAGCTAGGGCACACGCACTTGAAGGTTGAAaagagacacgcacgcacacctcCAGGTTACCTGTCTGCCTTTTCTACTCTcagtgaacagagggagtgACTTGTATGTTCATGTCGGAGATTCGAGGATTTACGAGGATTTCTGGTTCCACACAGGTCGGATTTTAATGAGGATTATTAACGCGCGCCGGGGCCCGGCCGGATGAGGAGGGCGGTGTTACGTTCAGGTGCACACAGGCTGCAGCCTGTTGATCCGCTCTGCTCTGGACTTCCCTGTTCTATTTCACCGCGAGGACGTGAGGAGCCAGTGCGAGAGtgggggcaggtctgtccgaacagcAACCCCAACCCTCCCccgtttttggtggagctggtCGTTTAAAagtcgactcggaagaaagcgaccgttatgaccatatcagtgatgtgtaactacatggaaatgcctttatttgacaggacagcttagacctGAAagtggaaagagagaaaggggaatgacatgcagcaaagggttgcAGGTCGGAATTGAACAAGCAGCCACTACGGAGAGGACCGAGCTTCTGTGTATATGGGGCGCAcgttctaccagATGCAGAGGGGAGGCAACATGCCTGTGGCCCGCAGGAAAGTGAGGTTGCTCTGCGCGACGATGATGCTCAACGTCGTCATCTTCTTCCTAGTGGGCGTGTCCTGGAACCTCGGGCGGGACAAAAGCGACCGCCCGAAGGTTCGAATCCCGTCCAAGAGGTTTTGGCGAAAACCGGTGCCGAGCAAATATTTCTGGAACAAGGAGCAGCAGCGCCTGGACACGATCTACAACCCCATCATCAACTCTCTGCCAAGTGACTCTATCATCGAGCTGCCTGATTGGCTGAACGACACGGGGCCAGTCAACCCCTGCGAACCGGACTACAGAGTCGCCACGCAGATCTCGGACTACAACACCCTGCCGCACCGCTTCCAGGATTTCCTCCTGCACATGCGCTGCAGGACGTACCCCATGCTGATAAACCAGCCGCATGTTTGTGACCAGAAACCCTTCCTGCTCCTCGTGGTCAAGTCACTGATCCCGCACTTCGACCGGCGGCAGGCAATCCGTGAAACGTGGGGCCGCGCGGGCACCTTAGCCAACCGCACGGTGGCGACGGTGTTCCTGCTGGGCAACGCGTTGCCCATAGACCACTTCCCCGACCTGCTGGGGATGCTGGGCCACGAGGCAAAGCTGCACAAAGACCTCCTCCTGTGGGACTACAGGGACACCTTCTTCAACCTCACCCTGAAGGATGTCCTCTTCCTGGAGTGGTTCAGCCAAAACTGTCCCCATGCTCAGTACGTCCTCAAGGGAGACGACGATGTCTTCGTCAACACCTTTCGAATTATTGAACTCCTGGAAGGCCTGTCCGACATCAAGGCCAAGGATCTGTTCATAGGTGACGTTATCAAGGACGCCGGTCCGCAACGAGACCGGAAACTGAAGTACTTTGTCCCAGAGAGTGTATTCACGGGGCAGTACCCGGCTTACGCAGGAGGCGGAGGATATCTGTACTCTGGGGAGTTGGCGCTACGCCTTCACAACGTTTCTCGGCAGGTAGCGTTGTATCCCATTGACGATGTCTACACGGGGATGTGTTTGAAAAAGCTGGGCCTGGTTCCAGAGAATCACAGCGGCTTTAAGACTTTTGACATCGAGGAGAAGTACAGGGACAACCCGTGCGTCTACAGGGACCTGATGCTGGTTCACAGCCGCACGCCACAGGACGTGTTGAAGATCTGGCCGTGGATTACCCATCCGGAGCTGGACTGCCAGTGAACACCTTCGTCTTTGTTTGCACTGTTGAGTTTGATTGTGAGGGTGATTCAGTATATAGACAGGAATGAAAATGGAAAATGAGGTGTGTGTAAGTtcttcttaaaggaacacaccgacttattgggacgttgtcttattcaccgtatcccccagagttagataagtccatacatacccttctcatctaactctgtctgacgc

Function

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008378 galactosyltransferase activity molecular_function

KEGG:

id description
K00741 B3GNT2; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3308 lncRNA downstream 31461 7126802 ~ 7127409 (-) True G2367
TU3303 lncRNA downstream 72585 7085358 ~ 7086285 (-) True G2362
TU3300 lncRNA downstream 77402 7081247 ~ 7081468 (-) True G2360
TU3285 lncRNA downstream 155863 6999171 ~ 7003007 (-) True LOC120571633
TU3278 lncRNA downstream 181233 6977280 ~ 6977637 (-) False G2342
TU3358 lncRNA upstream 1478 7225340 ~ 7240128 (-) False commd1
XR_005640135.1 lncRNA upstream 39829 7263691 ~ 7268389 (-) True LOC120564702
XR_005640658.1 lncRNA upstream 47957 7271819 ~ 7276543 (-) True LOC120568064
XR_005640671.1 lncRNA upstream 210054 7433916 ~ 7441067 (-) True LOC120568185
TU3435 lncRNA upstream 212612 7436474 ~ 7438272 (-) True G2451
XM_039823631.1 mRNA downstream 3547 7140734 ~ 7155323 (-) False zgc:66455
XM_039822887.1 mRNA downstream 3547 7140734 ~ 7155323 (-) True zgc:66455
XM_039820724.1 mRNA downstream 141211 7002504 ~ 7017659 (-) False LOC120571633
XM_039810502.1 mRNA downstream 219883 6889288 ~ 6938987 (-) True LOC120565104
XM_039803626.1 mRNA downstream 282633 6808752 ~ 6876237 (-) True vps54
XM_039810387.1 mRNA upstream 4752 7228614 ~ 7240150 (-) False commd1
XM_039812192.1 mRNA upstream 17958 7241820 ~ 7246413 (-) True LOC120565981
XM_039812275.1 mRNA upstream 17958 7241820 ~ 7246371 (-) False LOC120565981
XM_039812356.1 mRNA upstream 17958 7241820 ~ 7246365 (-) False LOC120565981
XM_039806902.1 mRNA upstream 25719 7249581 ~ 7255345 (-) False LOC120562943
unassigned_transcript_11 other downstream 115852 7042947 ~ 7043018 (-) True trnae-uuc_9
unassigned_transcript_10 other downstream 116702 7042097 ~ 7042168 (-) True trnae-uuc_8
unassigned_transcript_9 other downstream 119317 7039482 ~ 7039553 (-) True trnae-uuc_7
unassigned_transcript_8 other downstream 120287 7038512 ~ 7038583 (-) True trnae-uuc_6
unassigned_transcript_7 other downstream 121914 7036885 ~ 7036956 (-) True trnae-uuc_5
TU3357 other upstream 1478 7225340 ~ 7240128 (-) True commd1
XR_005640861.1 other upstream 108094 7331956 ~ 7372558 (-) True LOC120569296
XR_005640913.1 other upstream 333905 7557767 ~ 7557898 (-) True LOC120569612
XR_005640903.1 other upstream 348459 7572321 ~ 7572457 (-) True LOC120569585
TU3830 other upstream 515962 7739824 ~ 7763948 (-) True G2752

Expression Profile