RNA id: XM_039811534.1


Basic Information

Item Value
RNA id XM_039811534.1
length 3233
RNA type mRNA
GC content 0.48
exon number 14
gene id crmp1
representative False

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 25797199 ~ 25808606 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GACGCTCGCTTTTCGGACATGCGCACGCACAGGATAGTCACCTGTCTTGTCACGGTTCGCGTTCCACACGTCCCGAAGCAGCCGTGAGGCGCCGGATTCatcgctgtctctctcacacacggaAACAATAACCAACACACAGCAGGGGAGACAAAGGGGcgcagagagcagcgcagggcGCTGGATTAATAACAACCCGCGTCTGAGTTGACTGTCAGGGGGCAGAGTGACGGAAAGAGCATGTCTGGGACCAGTTACCAGGGAAAGAACAGCATCTCCCATCTGACGAGTGAAAGGCTGTTGATCAAAGGAGGGCGGGTGGTCAATGATGACCAGTCTCTCTATGCAGATGTGTACATTGAGGATGGGCTTATCAAGCAGGTGGGGGAGAATCTGGTTGTACCGGGGGGTATCAAGGTGATCGAGGCCAATGGTCGCATGGTGATACCAGGGGGGATAGATGTCAACACTTGCTTGATGAAGCATTACCTGGGCACACAGCCTGCTGATGATTTCCTCCAGGGCACCAAGGCTGCACTCGCTGGGGGCACCACCATGATCATTGACCATGTGACGCCTGCGCCGGGGGAGAGTCTGCTGGAGGCGTTTGAGTGCTGGCAGGAGGCTGCAGATAAGAAGGCATGTTGCGATTACTCCCTGCATGTAGACATCCCCCAGTGGAATGAGATTGTTAAAGATGAGTTGGAGCTGCTGGTGCAAGAGAAAGGTATCAACTCCTTCCAAGTATACATGGCTTATAAGGATGTGTACCAGATGTCAGACTCTCAGCTGTATGAGGCGTTCTCCTTCCTAAAGCAGCTGGGTGCTGTGGTGTTAGTTCATGCTGAAAATGGAGACCTGATTGCTCAGGAACAGAGAAAAATCCTCGGAATGGGAATCACCGGACCTGAAGGCCATCCTCTGAGTCGTCCTGAAGAGCTCGAGGCTGAGGCAGTGTTCCGTGCCATCACGCTTGGCAACCGTGTGAACTGTCCTGTGTACATCACCAAGGTGATGAGCAAGAGTGCAGCTGACACTATCGCCCAGGCACGTAGGAAAgGTTCTGTAGTTTTTGGGGAGCCAATTACAGCTAGCCTGGTCACTGACGGCTCTCACTATTGGAGCAGAAACTGGGCCAAAGCAGCTGCTTATGTGACCTCTCCACCTTTGAGTCCTGACCCCACAACCCCAGACCACCTCAACACACTGCTGGCTTGTGGGGACCTCCAGGTGGTGGGCAGTGCTCACTGCGCTTACAGCACTTCCCAGAAAGCAATCGGTAAAGATGACTTCACCCTGATCCCAGAGGGAACCAACGGAGTGGAGGAGAGAATGGGTTTcgtctgggacaaggccgtgGCCATGGGCAAAATGGATGAAAACCAGTTTGTGGCAGTCACATCGACCAACGCTGCTAAAATATTCAACTTGTACCCACGCAAAGGCAGGATAGCTGTGGGCTCTGATGCTGACATTGTCATCTGGGACCCCTACAGCGTCAAAACCATCACTGCCAAACTCCAGCAGTCGGCTTCAGAATACAACATCTTTGAGGGTCTGGAGTGCCGTGGAGGTCCAGCGCTGGTGTTGAGTCAAGGTCGGGTGGTTTATGAGGAAGGCAAGCTGCAGGCCCAGCAGGGCACCGGCCGATTTATTCCCCGCAAGCACTTCCCAGACTACGCTTACCAGCGCGTTAAATTCAGGAACCAGGTGAACAGACAGCAGGGCGTTACTCGTGGGTTGTATGATGGCCCTGTGTATGATGTCGTTCCTACCCCCAAATATATAACTCCTGCTCCGTCAGCCAAAACTTCACCCATCTCTCACCAACCACCACCAATACGCAATCTTCACCAGTCCAACTTTAGCCTATCAGGGGCACAGCTTGATGACAACATCCCTCGTAGGTCTGGCCACCGTATTGTAGCACCCCCCGGTGGTCGCTCCAACATCACTAGCCTTGGTTGAACAACCTGACTGTGTAcaaagtgttgttgttttggggtttcacctcctgagtgtgtgtgtatgactaaGAGTGTGAGCACACTGGCATTAAtcaaatttgtatttttttgcacaATGGTGACACACTCCTTTTAGACCATTATGATTTTtatcagtttgcctttagtgtGTGGTCACAGAAAAGAAGCACATTAATACTTCCAATACAAGAACAATCAAccataaaaatatgaaaaactcACAGGCTCAAGAttggggcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagatctggTATCAGACCCCAAATGTGTACCCGGTGTTATGTCATAATGTTGTTATCTCCTTCCCCTTGAGCATGACTTCCTCATTATTCTTCCTCACATCCCATGTCTACTGTGTGGGTCTGCTCAGACATGGTGCTCCTTTCCACCCATCTGGTGGACAGCTGATGAAATAATTGATTTCTCCTGCATCTGTTTTTCAACATCTtggcaatatttgttaaaatgtGGCTCAAGTGGATCAGTTATACATATTGCATGGACACGTCTTTAGATGTTGCACTACTTGTGGCTTATTGTTGCAATGGACGAACACTGGTAAATGTGTGCTTTGAAAACACAATGACATTCACTGTAGATAGAGCGAGCTGTTACTAGGTTCacatatggacacacacacatacattttaacattactgTGAACTTATATACAATAAAATCAATGCAACTTCCTCTCCACCATCTATATGCAAATGTATCAATACTCTCCTATACAGTGTGAAAGTAGATGAGCAGTTGAAACAAATACAATAACAGCTGTGCACAGCAAAATGAATTTCTAGATGGCTGTACCTACATAATAGAGTTTCACTGTAAACACTTTTGTGTGTGATAGTTTTCTGCCAATCATTCATGCCAGATATAGATCTTTGTTGTAATGATATGCTCAACTCACTGCTGTAAAAGGGCTTTAGCTCCCACCCCCGCTTTTTAAAACTTCACTAAGAATTTTTTAagctgtttttaattttatttgctTAATTCTGGATGTTTTCTTGGTACATTTGGTGTTTATATGCCACTTTGTTTCATTGCTGTTTTCTGGTGTCTCCAATGGAACCACTAATGATCAATAAAGACTTGACTTTTGTCAAAAATTATAGTAAAA

Function

GO:

id name namespace
GO:0006208 pyrimidine nucleobase catabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0016812 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10327 lncRNA downstream 8970 25784224 ~ 25788229 (-) False G7603
TU10325 lncRNA downstream 14598 25782169 ~ 25782601 (-) True G7602
TU10324 lncRNA downstream 18255 25778657 ~ 25778944 (-) True G7601
TU10323 lncRNA downstream 38934 25757405 ~ 25758265 (-) True G7600
TU10322 lncRNA downstream 44858 25751170 ~ 25752341 (-) True G7599
TU10387 lncRNA upstream 27864 25835627 ~ 25837814 (-) True G7646
TU10388 lncRNA upstream 30214 25837977 ~ 25838762 (-) True G7647
TU10495 lncRNA upstream 208697 26016460 ~ 26018100 (-) True G7726
TU10500 lncRNA upstream 213445 26021208 ~ 26110065 (-) True G7730
TU10507 lncRNA upstream 230528 26038291 ~ 26039107 (-) True G7737
XM_039815686.1 mRNA downstream 215521 25576779 ~ 25581678 (-) True LOC120568214
XM_039815614.1 mRNA downstream 217438 25576779 ~ 25579761 (-) False LOC120568214
XM_039815800.1 mRNA downstream 267797 25512589 ~ 25529402 (-) True LOC120568337
XM_039783113.1 mRNA downstream 317489 25476830 ~ 25479710 (-) True LOC120547284
XM_039784368.1 mRNA downstream 326509 25467097 ~ 25470690 (-) True smim18
XM_039800434.1 mRNA upstream 13291 25821054 ~ 25829233 (-) False ppp2r2ca
XM_039800417.1 mRNA upstream 13291 25821054 ~ 25829233 (-) False ppp2r2ca
XM_039800427.1 mRNA upstream 13291 25821054 ~ 25828951 (-) False ppp2r2ca
XM_039800423.1 mRNA upstream 13291 25821054 ~ 25828951 (-) True ppp2r2ca
XM_039798973.1 mRNA upstream 153964 25961727 ~ 26000026 (-) False camk2d2
TU10328 other downstream 8970 25783944 ~ 25788229 (-) True G7603
TU10312 other downstream 97642 25698261 ~ 25699557 (-) True G7589
TU10046 other downstream 1037599 24755932 ~ 24759600 (-) True LOC120543531
TU9991 other downstream 1261883 24532236 ~ 24535316 (-) True G7323
TU9658 other downstream 2016875 23774725 ~ 23780324 (-) False palm3
TU10486 other upstream 193761 26001524 ~ 26003263 (-) True G7722
TU10488 other upstream 193761 26001524 ~ 26009217 (-) False G7722
TU10489 other upstream 193761 26001524 ~ 26009217 (-) False G7722
TU10490 other upstream 193761 26001524 ~ 26009217 (-) False G7722
TU10491 other upstream 193761 26001524 ~ 26009217 (-) False G7722

Expression Profile